Wall clock time and date at job start Tue Mar 31 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30593 * 1 3 3 Si 1.86803 * 119.99937 * 2 1 4 4 H 1.48511 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47308 * 299.99874 * 3 2 1 6 6 H 1.48497 * 109.47193 * 60.00177 * 3 2 1 7 7 C 1.40214 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00190 * 179.97438 * 7 2 1 9 9 C 1.40756 * 119.99640 * 0.02562 * 7 2 1 10 10 O 1.21973 * 120.00062 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99930 * 179.97438 * 9 7 2 12 12 N 1.40103 * 119.99676 * 180.02562 * 11 9 7 13 13 C 1.30692 * 119.99581 * 179.97438 * 12 11 9 14 14 C 1.46722 * 119.99800 * 179.97438 * 13 12 11 15 15 C 1.40128 * 120.23012 * 179.97438 * 14 13 12 16 16 C 1.37655 * 119.86655 * 180.02562 * 15 14 13 17 17 C 1.38727 * 120.34426 * 0.02562 * 16 15 14 18 18 C 1.38175 * 120.47375 * 0.02562 * 17 16 15 19 19 C 1.38544 * 120.12533 * 359.97438 * 18 17 16 20 20 O 1.35676 * 120.17349 * 180.02562 * 19 18 17 21 21 C 1.42891 * 117.00018 * 359.97438 * 20 19 18 22 22 C 1.50703 * 109.47180 * 180.02562 * 21 20 19 23 23 C 1.38363 * 119.84890 * 269.72877 * 22 21 20 24 24 C 1.37949 * 120.15115 * 179.72100 * 23 22 21 25 25 C 1.39625 * 119.84114 * 0.57395 * 24 23 22 26 26 C 1.47727 * 120.14870 * 179.67943 * 25 24 23 27 27 O 1.21472 * 120.00452 * 180.02562 * 26 25 24 28 28 O 1.34709 * 119.99648 * 0.02562 * 26 25 24 29 29 C 1.39630 * 119.70692 * 359.70440 * 25 24 23 30 30 C 1.37949 * 119.84328 * 359.97438 * 29 25 24 31 31 H 0.97004 * 119.99860 * 359.97438 * 1 2 3 32 32 H 0.97002 * 119.99930 * 359.97438 * 11 9 7 33 33 H 1.07995 * 119.99990 * 359.97438 * 13 12 11 34 34 H 1.08003 * 120.06964 * 0.04503 * 15 14 13 35 35 H 1.07995 * 119.82970 * 180.02562 * 16 15 14 36 36 H 1.07998 * 119.76138 * 180.27800 * 17 16 15 37 37 H 1.08000 * 119.93097 * 179.97438 * 18 17 16 38 38 H 1.09003 * 109.47569 * 300.00522 * 21 20 19 39 39 H 1.09008 * 109.46744 * 60.00142 * 21 20 19 40 40 H 1.08006 * 119.92255 * 359.97438 * 23 22 21 41 41 H 1.07997 * 120.07466 * 180.27317 * 24 23 22 42 42 H 0.96703 * 117.00452 * 179.97438 * 28 26 25 43 43 H 1.07993 * 120.07941 * 179.97438 * 29 25 24 44 44 H 1.08002 * 119.92185 * 180.02562 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 3.7000 1.3464 -0.0006 5 1 1.8812 2.3965 -1.2125 6 1 1.8812 2.3964 1.2125 7 6 2.0071 -1.2143 -0.0005 8 1 3.0870 -1.2142 -0.0010 9 6 1.3033 -2.4332 -0.0016 10 8 0.0835 -2.4332 -0.0026 11 7 1.9771 -3.6004 -0.0027 12 7 1.2766 -4.8137 -0.0043 13 6 1.9300 -5.9455 -0.0058 14 6 1.1964 -7.2161 -0.0070 15 6 1.8922 -8.4325 -0.0091 16 6 1.1963 -9.6202 -0.0107 17 6 -0.1910 -9.6197 -0.0107 18 6 -0.8913 -8.4286 -0.0097 19 6 -0.2107 -7.2219 -0.0080 20 8 -0.8974 -6.0517 -0.0065 21 6 -2.3238 -6.1366 -0.0072 22 6 -2.9097 -4.7481 -0.0058 23 6 -3.1831 -4.1171 1.1948 24 6 -3.7140 -2.8440 1.2033 25 6 -3.9866 -2.1968 -0.0035 26 6 -4.5618 -0.8361 -0.0023 27 8 -4.7984 -0.2757 -1.0537 28 8 -4.8240 -0.2168 1.1649 29 6 -3.7136 -2.8416 -1.2115 30 6 -3.1765 -4.1122 -1.2054 31 1 -0.4850 0.8401 0.0004 32 1 2.9472 -3.6004 -0.0031 33 1 3.0100 -5.9455 -0.0062 34 1 2.9722 -8.4382 -0.0092 35 1 1.7331 -10.5573 -0.0120 36 1 -0.7274 -10.5571 -0.0074 37 1 -1.9712 -8.4385 -0.0101 38 1 -2.6557 -6.6698 -0.8980 39 1 -2.6563 -6.6725 0.8820 40 1 -2.9765 -4.6210 2.1275 41 1 -3.9229 -2.3509 2.1412 42 1 -5.1997 0.6729 1.1152 43 1 -3.9225 -2.3468 -2.1484 44 1 -2.9644 -4.6120 -2.1390 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000509713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:41 Heat of formation + Delta-G solvation = -59.213594 kcal Electronic energy + Delta-G solvation = -32603.019485 eV Core-core repulsion = 28066.223930 eV Total energy + Delta-G solvation = -4536.795555 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.125 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.17183 -39.85221 -38.46560 -37.44668 -36.97233 -35.79268 -35.05722 -32.66119 -32.22025 -31.67068 -30.68438 -30.00350 -29.00130 -27.00126 -26.43249 -23.54678 -23.37301 -22.44438 -21.77171 -20.73249 -20.34954 -19.59851 -17.97199 -17.86871 -17.35281 -17.14782 -16.38845 -15.71662 -15.68333 -15.42661 -15.34394 -15.27803 -14.73509 -14.44747 -14.17892 -14.01763 -13.90916 -13.23110 -13.14022 -13.08965 -13.01510 -12.60747 -12.56459 -12.45817 -12.18123 -11.59246 -11.33350 -11.29340 -11.28180 -11.27595 -10.97537 -10.80997 -10.79477 -10.62223 -10.56543 -10.30549 -10.29664 -9.28312 -9.09048 -8.80574 -8.58486 -8.57443 -8.14344 -7.60851 -7.05145 -6.31813 -4.85832 0.96668 1.16434 1.60206 1.78658 2.77471 2.97354 3.08700 3.14007 3.18362 3.29457 3.60088 3.82967 4.07720 4.16497 4.29250 4.53670 4.79436 4.85935 4.93944 5.06421 5.14958 5.21186 5.25972 5.34490 5.39007 5.51226 5.55147 5.70551 5.77153 5.87171 5.87461 5.89872 6.09699 6.14988 6.30443 6.32153 6.51283 6.55777 6.58842 6.67928 6.72806 6.80088 6.81581 6.96103 7.18190 7.26338 7.74945 7.93379 8.06807 8.17136 8.82199 8.85155 9.40502 10.45753 10.76788 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.007147 B = 0.003960 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3916.899758 B = 7069.046040 C =10543.676699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.091 3.909 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.538 6.538 11 N -0.592 5.592 12 N -0.153 5.153 13 C 0.001 3.999 14 C -0.051 4.051 15 C -0.072 4.072 16 C -0.164 4.164 17 C -0.085 4.085 18 C -0.217 4.217 19 C 0.149 3.851 20 O -0.255 6.255 21 C 0.095 3.905 22 C -0.046 4.046 23 C -0.101 4.101 24 C -0.053 4.053 25 C -0.109 4.109 26 C 0.534 3.466 27 O -0.520 6.520 28 O -0.512 6.512 29 C -0.046 4.046 30 C -0.098 4.098 31 H 0.270 0.730 32 H 0.364 0.636 33 H 0.104 0.896 34 H 0.129 0.871 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.409 0.591 43 H 0.133 0.867 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.026 -13.450 1.909 14.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.364 3.636 10 O -0.416 6.416 11 N -0.338 5.338 12 N 0.036 4.964 13 C -0.207 4.207 14 C -0.053 4.053 15 C -0.093 4.093 16 C -0.182 4.182 17 C -0.104 4.104 18 C -0.236 4.236 19 C 0.100 3.900 20 O -0.166 6.166 21 C 0.020 3.980 22 C -0.046 4.046 23 C -0.119 4.119 24 C -0.071 4.071 25 C -0.110 4.110 26 C 0.380 3.620 27 O -0.410 6.410 28 O -0.323 6.323 29 C -0.064 4.064 30 C -0.116 4.116 31 H 0.081 0.919 32 H 0.199 0.801 33 H 0.121 0.879 34 H 0.146 0.854 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.143 0.857 41 H 0.151 0.849 42 H 0.267 0.733 43 H 0.151 0.849 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.786 -12.697 1.650 14.491 hybrid contribution 1.801 1.103 -0.039 2.112 sum -4.985 -11.594 1.611 12.723 Atomic orbital electron populations 1.70022 1.07103 1.27471 1.32078 1.25688 0.94612 1.00349 0.92588 0.86278 0.80547 0.81376 0.78421 1.18613 1.19951 1.19951 1.19769 0.94283 0.89774 1.53715 0.91458 1.16775 0.88037 0.80239 0.78513 1.90742 1.12918 1.85116 1.52803 1.48244 1.07245 1.02345 1.75928 1.75148 1.26469 0.92425 1.02318 1.23781 0.96214 0.90804 1.09879 1.17934 0.89203 0.92105 1.06104 1.20998 0.99523 0.90456 0.98303 1.20832 0.94113 0.97654 1.05617 1.20947 0.94194 0.97078 0.98221 1.21165 1.00066 0.92131 1.10203 1.19376 0.91226 0.85229 0.94178 1.86636 1.17444 1.26014 1.86462 1.21641 0.80400 0.94549 1.01431 1.19507 0.96500 0.94830 0.93768 1.20841 0.98661 0.94974 0.97414 1.21244 0.94771 0.93867 0.97247 1.18898 1.05705 0.91231 0.95164 1.20934 0.73940 0.86409 0.80753 1.90845 1.50392 1.66678 1.33047 1.84572 1.77012 1.35312 1.35387 1.21052 0.94594 0.93751 0.97022 1.20795 0.98553 0.94722 0.97539 0.91920 0.80087 0.87915 0.85352 0.86154 0.86293 0.85645 0.91462 0.91449 0.85696 0.84879 0.73296 0.84931 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.58 11.71 55.56 0.65 -20.93 16 2 C 0.09 2.48 5.50 -17.34 -0.10 2.39 16 3 Si 0.91 19.80 29.56 -169.99 -5.02 14.78 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.54 -15.00 9.26 -37.89 -0.35 -15.35 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 9 C 0.56 16.10 7.66 -15.31 -0.12 15.99 16 10 O -0.54 -17.30 15.20 4.94 0.08 -17.23 16 11 N -0.59 -14.37 6.26 28.94 0.18 -14.18 16 12 N -0.15 -3.49 8.93 32.12 0.29 -3.20 16 13 C 0.00 0.03 10.76 -14.61 -0.16 -0.13 16 14 C -0.05 -0.80 5.89 -104.83 -0.62 -1.42 16 15 C -0.07 -0.88 9.80 -39.09 -0.38 -1.26 16 16 C -0.16 -1.75 10.02 -39.61 -0.40 -2.14 16 17 C -0.09 -0.92 10.04 -39.42 -0.40 -1.31 16 18 C -0.22 -2.73 9.03 -39.49 -0.36 -3.08 16 19 C 0.15 2.40 6.71 -38.53 -0.26 2.14 16 20 O -0.26 -4.74 7.99 -18.73 -0.15 -4.89 16 21 C 0.10 1.38 4.86 36.01 0.17 1.56 16 22 C -0.05 -0.77 5.52 -104.53 -0.58 -1.35 16 23 C -0.10 -1.70 9.68 -39.64 -0.38 -2.08 16 24 C -0.05 -0.93 9.62 -39.17 -0.38 -1.30 16 25 C -0.11 -2.03 5.87 -104.98 -0.62 -2.65 16 26 C 0.53 9.70 8.27 34.61 0.29 9.98 16 27 O -0.52 -10.50 17.13 -19.24 -0.33 -10.82 16 28 O -0.51 -7.42 12.68 -40.52 -0.51 -7.93 16 29 C -0.05 -0.85 9.60 -39.17 -0.38 -1.22 16 30 C -0.10 -1.69 9.68 -39.64 -0.38 -2.08 16 31 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 32 H 0.36 7.56 8.62 -182.59 -1.57 5.99 16 33 H 0.10 1.56 8.03 -52.49 -0.42 1.14 16 34 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.13 1.31 6.30 -52.49 -0.33 0.98 16 38 H 0.07 0.81 7.60 -51.93 -0.39 0.42 16 39 H 0.07 0.81 7.60 -51.92 -0.39 0.41 16 40 H 0.13 1.83 8.06 -52.48 -0.42 1.40 16 41 H 0.13 2.07 7.61 -52.49 -0.40 1.67 16 42 H 0.41 3.86 9.11 45.56 0.42 4.28 16 43 H 0.13 2.34 7.65 -52.49 -0.40 1.93 16 44 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 397.49 15.07 5.99 5.99 Total: -1.00 -38.64 397.49 -9.38 -48.02 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -5.16 Total: 13.74 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -5.38 Total: -3.33 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 1.12 Total: -38.32 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.92 Total: -40.87 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.64 -9.38 -48.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000509713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.196 kcal (2) G-P(sol) polarization free energy of solvation -38.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds