Wall clock time and date at job start Tue Mar 31 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30593 * 1 3 3 Si 1.86803 * 119.99937 * 2 1 4 4 H 1.48511 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47308 * 299.99874 * 3 2 1 6 6 H 1.48497 * 109.47193 * 60.00177 * 3 2 1 7 7 C 1.40214 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00190 * 179.97438 * 7 2 1 9 9 C 1.40756 * 119.99640 * 0.02562 * 7 2 1 10 10 O 1.21973 * 120.00062 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99930 * 179.97438 * 9 7 2 12 12 N 1.40103 * 119.99676 * 180.02562 * 11 9 7 13 13 C 1.30692 * 119.99581 * 179.97438 * 12 11 9 14 14 C 1.46722 * 119.99800 * 179.97438 * 13 12 11 15 15 C 1.40128 * 120.23012 * 179.97438 * 14 13 12 16 16 C 1.37655 * 119.86655 * 180.02562 * 15 14 13 17 17 C 1.38727 * 120.34426 * 0.02562 * 16 15 14 18 18 C 1.38175 * 120.47375 * 0.02562 * 17 16 15 19 19 C 1.38544 * 120.12533 * 359.97438 * 18 17 16 20 20 O 1.35676 * 120.17349 * 180.02562 * 19 18 17 21 21 C 1.42891 * 117.00018 * 359.97438 * 20 19 18 22 22 C 1.50703 * 109.47180 * 180.02562 * 21 20 19 23 23 C 1.38363 * 119.84890 * 269.72877 * 22 21 20 24 24 C 1.37949 * 120.15115 * 179.72100 * 23 22 21 25 25 C 1.39625 * 119.84114 * 0.57395 * 24 23 22 26 26 C 1.47727 * 120.14870 * 179.67943 * 25 24 23 27 27 O 1.21472 * 120.00452 * 180.02562 * 26 25 24 28 28 O 1.34709 * 119.99648 * 0.02562 * 26 25 24 29 29 C 1.39630 * 119.70692 * 359.70440 * 25 24 23 30 30 C 1.37949 * 119.84328 * 359.97438 * 29 25 24 31 31 H 0.97004 * 119.99860 * 359.97438 * 1 2 3 32 32 H 0.97002 * 119.99930 * 359.97438 * 11 9 7 33 33 H 1.07995 * 119.99990 * 359.97438 * 13 12 11 34 34 H 1.08003 * 120.06964 * 0.04503 * 15 14 13 35 35 H 1.07995 * 119.82970 * 180.02562 * 16 15 14 36 36 H 1.07998 * 119.76138 * 180.27800 * 17 16 15 37 37 H 1.08000 * 119.93097 * 179.97438 * 18 17 16 38 38 H 1.09003 * 109.47569 * 300.00522 * 21 20 19 39 39 H 1.09008 * 109.46744 * 60.00142 * 21 20 19 40 40 H 1.08006 * 119.92255 * 359.97438 * 23 22 21 41 41 H 1.07997 * 120.07466 * 180.27317 * 24 23 22 42 42 H 0.96703 * 117.00452 * 179.97438 * 28 26 25 43 43 H 1.07993 * 120.07941 * 179.97438 * 29 25 24 44 44 H 1.08002 * 119.92185 * 180.02562 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 3.7000 1.3464 -0.0006 5 1 1.8812 2.3965 -1.2125 6 1 1.8812 2.3964 1.2125 7 6 2.0071 -1.2143 -0.0005 8 1 3.0870 -1.2142 -0.0010 9 6 1.3033 -2.4332 -0.0016 10 8 0.0835 -2.4332 -0.0026 11 7 1.9771 -3.6004 -0.0027 12 7 1.2766 -4.8137 -0.0043 13 6 1.9300 -5.9455 -0.0058 14 6 1.1964 -7.2161 -0.0070 15 6 1.8922 -8.4325 -0.0091 16 6 1.1963 -9.6202 -0.0107 17 6 -0.1910 -9.6197 -0.0107 18 6 -0.8913 -8.4286 -0.0097 19 6 -0.2107 -7.2219 -0.0080 20 8 -0.8974 -6.0517 -0.0065 21 6 -2.3238 -6.1366 -0.0072 22 6 -2.9097 -4.7481 -0.0058 23 6 -3.1831 -4.1171 1.1948 24 6 -3.7140 -2.8440 1.2033 25 6 -3.9866 -2.1968 -0.0035 26 6 -4.5618 -0.8361 -0.0023 27 8 -4.7984 -0.2757 -1.0537 28 8 -4.8240 -0.2168 1.1649 29 6 -3.7136 -2.8416 -1.2115 30 6 -3.1765 -4.1122 -1.2054 31 1 -0.4850 0.8401 0.0004 32 1 2.9472 -3.6004 -0.0031 33 1 3.0100 -5.9455 -0.0062 34 1 2.9722 -8.4382 -0.0092 35 1 1.7331 -10.5573 -0.0120 36 1 -0.7274 -10.5571 -0.0074 37 1 -1.9712 -8.4385 -0.0101 38 1 -2.6557 -6.6698 -0.8980 39 1 -2.6563 -6.6725 0.8820 40 1 -2.9765 -4.6210 2.1275 41 1 -3.9229 -2.3509 2.1412 42 1 -5.1997 0.6729 1.1152 43 1 -3.9225 -2.3468 -2.1484 44 1 -2.9644 -4.6120 -2.1390 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000509713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:40 Heat of formation + Delta-G solvation = -86.118947 kcal Electronic energy + Delta-G solvation = -32604.186189 eV Core-core repulsion = 28066.223930 eV Total energy + Delta-G solvation = -4537.962258 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.125 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.48919 -41.02611 -39.75255 -39.36073 -38.11263 -37.14502 -36.75011 -34.64620 -33.60502 -33.12008 -32.03431 -31.19149 -30.36961 -28.44177 -28.14150 -24.79959 -24.70037 -23.77792 -22.88851 -22.25191 -21.70987 -21.21491 -19.50010 -19.22673 -18.74980 -18.53154 -17.83566 -17.55156 -16.90946 -16.83356 -16.67848 -16.55113 -15.84756 -15.78175 -15.71058 -15.41456 -15.06717 -14.96517 -14.59297 -14.51547 -14.25813 -14.24103 -13.82948 -13.67532 -13.46782 -13.23617 -12.96615 -12.67923 -12.65018 -12.58143 -12.50832 -12.31090 -12.19967 -12.01587 -11.85677 -11.75239 -11.70044 -10.98217 -10.75133 -10.19228 -9.94686 -9.93794 -9.76785 -9.30711 -8.57460 -8.35132 -6.99687 -0.40816 0.08102 0.41757 0.63767 1.34802 1.36047 1.39890 1.53806 1.70573 2.02396 2.11903 2.38697 2.46925 2.50553 3.00444 3.05280 3.63437 3.70844 3.77529 3.78937 3.95073 4.02791 4.09933 4.15961 4.26113 4.28426 4.40470 4.45420 4.54770 4.58538 4.72603 4.77247 4.80287 4.97394 5.08993 5.18197 5.19609 5.21203 5.30594 5.45199 5.51031 5.52112 5.61194 5.69479 5.85658 5.88984 6.01338 6.11036 6.66871 6.74931 6.91261 7.11962 7.57891 8.46613 8.72821 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.007147 B = 0.003960 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3916.899758 B = 7069.046040 C =10543.676699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.037 3.963 3 Si 0.995 3.005 4 H -0.246 1.246 5 H -0.270 1.270 6 H -0.265 1.265 7 C -0.565 4.565 8 H 0.084 0.916 9 C 0.545 3.455 10 O -0.586 6.586 11 N -0.603 5.603 12 N -0.223 5.223 13 C 0.046 3.954 14 C -0.101 4.101 15 C -0.057 4.057 16 C -0.161 4.161 17 C -0.069 4.069 18 C -0.222 4.222 19 C 0.128 3.872 20 O -0.296 6.296 21 C 0.094 3.906 22 C -0.052 4.052 23 C -0.111 4.111 24 C -0.061 4.061 25 C -0.135 4.135 26 C 0.536 3.464 27 O -0.550 6.550 28 O -0.501 6.501 29 C -0.066 4.066 30 C -0.109 4.109 31 H 0.273 0.727 32 H 0.375 0.625 33 H 0.131 0.869 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.145 0.855 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.431 0.569 43 H 0.129 0.871 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 -16.538 2.592 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.182 4.182 3 Si 0.814 3.186 4 H -0.169 1.169 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.602 4.602 8 H 0.103 0.897 9 C 0.353 3.647 10 O -0.469 6.469 11 N -0.348 5.348 12 N -0.031 5.031 13 C -0.164 4.164 14 C -0.104 4.104 15 C -0.078 4.078 16 C -0.179 4.179 17 C -0.088 4.088 18 C -0.241 4.241 19 C 0.079 3.921 20 O -0.208 6.208 21 C 0.019 3.981 22 C -0.052 4.052 23 C -0.129 4.129 24 C -0.079 4.079 25 C -0.136 4.136 26 C 0.383 3.617 27 O -0.442 6.442 28 O -0.315 6.315 29 C -0.084 4.084 30 C -0.127 4.127 31 H 0.083 0.917 32 H 0.212 0.788 33 H 0.148 0.852 34 H 0.173 0.827 35 H 0.175 0.825 36 H 0.174 0.826 37 H 0.163 0.837 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.293 0.707 43 H 0.147 0.853 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.052 -15.823 2.355 16.776 hybrid contribution 1.322 1.593 -0.215 2.081 sum -3.730 -14.230 2.140 14.865 Atomic orbital electron populations 1.70199 1.09391 1.28729 1.33287 1.26895 0.95450 1.04595 0.91215 0.85011 0.79520 0.75416 0.78643 1.16855 1.19482 1.19011 1.20256 0.95257 0.90414 1.54281 0.89736 1.17076 0.87753 0.81874 0.78001 1.90686 1.14724 1.86436 1.55054 1.47545 1.07424 1.02577 1.77245 1.75288 1.27058 0.92624 1.08081 1.24549 0.97948 0.90704 1.03176 1.18221 0.89679 0.92166 1.10364 1.21367 1.00933 0.89532 0.95957 1.21318 0.94358 0.98432 1.03771 1.21486 0.94646 0.97752 0.94876 1.21443 1.01262 0.91488 1.09864 1.19759 0.91585 0.85692 0.95035 1.86578 1.19004 1.28104 1.87107 1.21805 0.79172 0.93299 1.03805 1.19880 0.95689 0.96198 0.93430 1.21186 0.98232 0.94970 0.98463 1.21489 0.94669 0.94336 0.97408 1.19153 1.06713 0.91952 0.95782 1.20929 0.73368 0.86362 0.81052 1.90815 1.51913 1.67366 1.34134 1.84518 1.76601 1.36843 1.33511 1.21206 0.95504 0.94576 0.97098 1.21062 0.98392 0.94572 0.98693 0.91701 0.78808 0.85237 0.82734 0.82458 0.82626 0.83692 0.89135 0.88818 0.83712 0.83485 0.70727 0.85329 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -48.14 11.71 21.86 0.26 -47.89 16 2 C 0.04 2.09 5.50 85.36 0.47 2.56 16 3 Si 0.99 41.21 29.56 68.60 2.03 43.24 16 4 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 7 C -0.57 -32.56 9.26 23.37 0.22 -32.34 16 8 H 0.08 4.37 7.85 -2.91 -0.02 4.34 16 9 C 0.55 33.16 7.66 84.86 0.65 33.81 16 10 O -0.59 -40.09 15.20 -5.23 -0.08 -40.17 16 11 N -0.60 -30.51 6.26 -180.47 -1.13 -31.64 16 12 N -0.22 -10.52 8.93 -52.28 -0.47 -10.99 16 13 C 0.05 1.64 10.76 87.08 0.94 2.57 16 14 C -0.10 -3.04 5.89 -20.00 -0.12 -3.16 16 15 C -0.06 -1.17 9.80 22.59 0.22 -0.95 16 16 C -0.16 -2.55 10.02 22.25 0.22 -2.33 16 17 C -0.07 -1.12 10.04 22.37 0.22 -0.90 16 18 C -0.22 -4.86 9.03 22.33 0.20 -4.66 16 19 C 0.13 3.95 6.71 22.95 0.15 4.11 16 20 O -0.30 -11.12 7.99 -89.94 -0.72 -11.84 16 21 C 0.09 2.69 4.86 71.24 0.35 3.04 16 22 C -0.05 -1.81 5.52 -19.80 -0.11 -1.92 16 23 C -0.11 -3.87 9.68 22.23 0.22 -3.65 16 24 C -0.06 -2.24 9.62 22.54 0.22 -2.02 16 25 C -0.13 -5.39 5.87 -20.10 -0.12 -5.51 16 26 C 0.54 20.62 8.27 70.33 0.58 21.20 16 27 O -0.55 -23.55 17.13 19.93 0.34 -23.20 16 28 O -0.50 -14.97 12.68 -56.19 -0.71 -15.68 16 29 C -0.07 -2.62 9.60 22.54 0.22 -2.40 16 30 C -0.11 -4.02 9.68 22.23 0.22 -3.80 16 31 H 0.27 15.28 8.29 -92.71 -0.77 14.51 16 32 H 0.37 16.12 8.62 -213.32 -1.84 14.29 16 33 H 0.13 3.72 8.03 -2.91 -0.02 3.70 16 34 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 36 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.15 2.50 6.30 -2.91 -0.02 2.48 16 38 H 0.09 2.08 7.60 -2.39 -0.02 2.07 16 39 H 0.09 2.10 7.60 -2.38 -0.02 2.09 16 40 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 41 H 0.15 4.77 7.61 -2.91 -0.02 4.75 16 42 H 0.43 8.23 9.11 -74.06 -0.67 7.55 16 43 H 0.13 5.02 7.65 -2.91 -0.02 5.00 16 44 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -91.42 397.49 2.84 -88.58 By element: Atomic # 1 Polarization: 47.37 SS G_CDS: -1.42 Total: 45.94 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 4.74 Total: 3.65 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -1.34 Total: -90.51 kcal Atomic # 8 Polarization: -89.73 SS G_CDS: -1.17 Total: -90.90 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -91.42 2.84 -88.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000509713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.463 kcal (2) G-P(sol) polarization free energy of solvation -91.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds