Wall clock time and date at job start Tue Mar 31 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47014 * 2 1 4 4 C 1.50705 * 109.47225 * 119.99473 * 2 1 3 5 5 N 1.28011 * 120.00005 * 240.00214 * 4 2 1 6 6 N 1.40103 * 119.99972 * 180.02562 * 5 4 2 7 7 C 1.34778 * 119.99993 * 180.02562 * 6 5 4 8 8 O 1.21304 * 119.99712 * 359.97438 * 7 6 5 9 9 C 1.50692 * 119.99897 * 180.02562 * 7 6 5 10 10 S 1.81402 * 109.47270 * 179.97438 * 9 7 6 11 11 C 1.81401 * 103.00049 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46945 * 179.97438 * 11 10 9 13 13 C 1.38237 * 120.00455 * 89.99930 * 12 11 10 14 14 C 1.38224 * 120.01313 * 179.74163 * 13 12 11 15 15 C 1.38264 * 120.02445 * 0.26351 * 14 13 12 16 16 C 1.38190 * 120.01695 * 0.02562 * 15 14 13 17 17 C 1.38328 * 120.01174 * 270.27665 * 12 11 10 18 18 Cl 1.73603 * 120.01189 * 0.02562 * 17 12 11 19 19 C 1.52997 * 109.47454 * 239.99787 * 2 1 3 20 20 C 1.50701 * 109.46845 * 59.99814 * 19 2 1 21 21 H 1.07994 * 120.00014 * 359.97438 * 20 19 2 22 22 C 1.37885 * 119.99567 * 180.02562 * 20 19 2 23 23 N 1.31514 * 119.99732 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00004 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47196 * 89.99820 * 24 22 20 26 26 H 1.48498 * 109.46560 * 209.99810 * 24 22 20 27 27 H 1.48495 * 109.47070 * 329.99495 * 24 22 20 28 28 H 1.08996 * 109.47309 * 300.00061 * 1 2 3 29 29 H 1.09000 * 109.47108 * 60.00598 * 1 2 3 30 30 H 1.09005 * 109.46822 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47147 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46695 * 299.99655 * 3 2 1 33 33 H 1.08996 * 109.47132 * 59.99831 * 3 2 1 34 34 H 1.07993 * 119.99891 * 60.00431 * 4 2 1 35 35 H 0.97000 * 119.99573 * 0.02562 * 6 5 4 36 36 H 1.08999 * 109.47497 * 59.99487 * 9 7 6 37 37 H 1.09003 * 109.47242 * 299.99626 * 9 7 6 38 38 H 1.09006 * 109.47029 * 60.00391 * 11 10 9 39 39 H 1.08995 * 109.46982 * 299.99972 * 11 10 9 40 40 H 1.08002 * 119.99593 * 0.02780 * 13 12 11 41 41 H 1.07996 * 119.98813 * 180.23496 * 14 13 12 42 42 H 1.08004 * 119.98845 * 179.97438 * 15 14 13 43 43 H 1.08000 * 120.00844 * 180.02562 * 16 15 14 44 44 H 1.08998 * 109.47385 * 179.97438 * 19 2 1 45 45 H 1.08997 * 109.47076 * 300.00031 * 19 2 1 46 46 H 0.96998 * 119.99674 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 2.7682 -0.0881 2.0731 6 7 3.2357 -0.7486 3.2169 7 6 4.0101 -0.0934 4.1042 8 8 4.3027 1.0681 3.9124 9 6 4.5134 -0.8040 5.3341 10 16 5.5209 0.3363 6.3217 11 6 6.0259 -0.6838 7.7340 12 6 6.8848 0.1346 8.6632 13 6 6.3016 0.8556 9.6884 14 6 7.0898 1.6021 10.5441 15 6 8.4613 1.6325 10.3718 16 6 9.0449 0.9170 9.3437 17 6 8.2564 0.1693 8.4870 18 17 8.9888 -0.7296 7.1949 19 6 2.0400 -0.7213 -1.2492 20 6 1.5377 -0.0109 -2.4796 21 1 0.9164 0.8669 -2.3806 22 6 1.8704 -0.4824 -3.7319 23 7 1.4316 0.1373 -4.8058 24 14 2.9433 -2.0019 -3.9032 25 1 2.0839 -3.2121 -3.9484 26 1 3.7352 -1.9100 -5.1560 27 1 3.8637 -2.0915 -2.7413 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.7715 -1.7442 1.4015 35 1 3.0020 -1.6775 3.3700 36 1 5.1197 -1.6596 5.0369 37 1 3.6661 -1.1477 5.9275 38 1 6.5940 -1.5429 7.3770 39 1 5.1405 -1.0298 8.2673 40 1 5.2304 0.8319 9.8237 41 1 6.6341 2.1622 11.3472 42 1 9.0765 2.2164 11.0405 43 1 10.1163 0.9406 9.2095 44 1 3.1300 -0.7209 -1.2494 45 1 1.6767 -1.7489 -1.2491 46 1 1.6654 -0.1946 -5.6867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002056140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:29 Heat of formation + Delta-G solvation = 15.632797 kcal Electronic energy + Delta-G solvation = -26357.257252 eV Core-core repulsion = 22399.860396 eV Total energy + Delta-G solvation = -3957.396856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 368.107 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.90194 -39.58646 -37.70785 -36.84767 -35.38064 -33.46956 -32.58040 -31.70344 -31.24003 -29.55492 -27.74635 -27.56215 -26.43344 -23.99484 -23.24184 -22.27030 -21.74427 -20.77403 -18.49166 -17.64056 -17.11776 -17.05037 -16.74352 -16.37804 -16.33777 -15.86143 -15.77449 -14.72932 -14.34794 -14.31774 -14.20720 -14.04055 -13.80056 -13.69437 -13.32624 -13.08064 -13.02649 -12.93941 -12.35466 -12.12333 -11.94646 -11.93397 -11.85104 -11.37909 -11.18366 -11.14940 -11.01442 -10.89341 -10.58519 -10.43188 -10.26781 -10.13650 -9.81007 -9.73221 -9.68147 -9.39231 -9.12872 -9.04025 -8.66587 -8.54513 -7.93880 -6.04514 -4.02012 0.34723 0.69955 1.29122 1.70800 1.99120 2.13289 2.58672 2.84906 3.17111 3.28457 3.37610 3.40060 3.98504 4.14786 4.30380 4.42934 4.43898 4.57841 4.59984 4.76656 4.79245 4.86528 4.95502 4.99703 5.17438 5.17971 5.29248 5.36523 5.67798 5.76782 5.78929 5.83326 5.88656 5.94124 6.24527 6.28279 6.46597 6.55158 6.77340 6.92261 7.00645 7.05102 7.11378 7.22310 7.31644 7.60808 7.75692 8.45927 8.52463 9.00190 9.57216 11.08164 Molecular weight = 368.11amu Principal moments of inertia in cm(-1) A = 0.018767 B = 0.001518 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.609391 B =18436.966264 C =19239.401615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.004 4.004 3 C -0.120 4.120 4 C 0.105 3.895 5 N -0.243 5.243 6 N -0.592 5.592 7 C 0.546 3.454 8 O -0.484 6.484 9 C -0.131 4.131 10 S -0.149 6.149 11 C -0.078 4.078 12 C -0.063 4.063 13 C -0.089 4.089 14 C -0.115 4.115 15 C -0.103 4.103 16 C -0.111 4.111 17 C -0.020 4.020 18 Cl -0.058 7.058 19 C 0.002 3.998 20 C -0.511 4.511 21 H 0.081 0.919 22 C 0.068 3.932 23 N -0.901 5.901 24 Si 0.874 3.126 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.267 1.267 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.102 0.898 35 H 0.378 0.622 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.019 0.981 45 H 0.014 0.986 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.571 -4.823 34.205 36.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.007 4.007 3 C -0.177 4.177 4 C -0.111 4.111 5 N -0.044 5.044 6 N -0.333 5.333 7 C 0.330 3.670 8 O -0.355 6.355 9 C -0.284 4.284 10 S 0.079 5.921 11 C -0.225 4.225 12 C -0.065 4.065 13 C -0.109 4.109 14 C -0.133 4.133 15 C -0.122 4.122 16 C -0.130 4.130 17 C -0.049 4.049 18 Cl -0.029 7.029 19 C -0.037 4.037 20 C -0.549 4.549 21 H 0.099 0.901 22 C -0.133 4.133 23 N -0.540 5.540 24 Si 0.702 3.298 25 H -0.204 1.204 26 H -0.214 1.214 27 H -0.192 1.192 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.119 0.881 35 H 0.216 0.784 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.153 0.847 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.037 0.963 45 H 0.032 0.968 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.579 -2.211 33.855 35.849 hybrid contribution -0.076 -3.832 -0.084 3.834 sum 11.503 -6.043 33.771 36.185 Atomic orbital electron populations 1.21736 0.93270 1.01435 1.01817 1.19604 0.95634 0.96066 0.89418 1.21624 1.00939 0.94221 1.00964 1.26749 0.92103 0.97616 0.94584 1.74672 1.11703 1.23575 0.94493 1.47004 1.51684 1.13503 1.21147 1.19330 0.78210 0.87056 0.82451 1.90785 1.54299 1.15817 1.74569 1.23501 1.03837 1.02760 0.98281 1.87932 1.64473 1.17573 1.22081 1.22505 1.02159 1.00436 0.97403 1.19012 0.91396 0.99528 0.96606 1.21061 1.00524 0.95540 0.93796 1.21267 0.93831 0.98811 0.99434 1.21193 0.95194 0.98477 0.97350 1.21084 1.00371 0.96806 0.94731 1.20858 0.92566 0.98595 0.92841 1.98392 1.82500 1.73365 1.48642 1.19629 0.96448 0.95370 0.92215 1.21052 1.31967 1.13499 0.88377 0.90069 1.24977 0.95630 0.96721 0.95962 1.69894 1.45777 1.40450 0.97876 0.86872 0.81307 0.83942 0.77709 1.20389 1.21424 1.19183 0.94364 0.89985 0.93224 0.93046 0.91138 0.94103 0.88106 0.78433 0.86925 0.86946 0.88476 0.88627 0.84709 0.85041 0.84892 0.84660 0.96301 0.96753 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.13 8.20 37.15 0.30 -1.83 16 2 C 0.00 -0.08 0.75 -155.66 -0.12 -0.20 16 3 C -0.12 -2.40 7.45 37.16 0.28 -2.12 16 4 C 0.10 1.70 9.56 -13.87 -0.13 1.56 16 5 N -0.24 -4.20 9.70 32.67 0.32 -3.89 16 6 N -0.59 -7.98 6.25 31.22 0.20 -7.78 16 7 C 0.55 7.71 7.97 -10.99 -0.09 7.63 16 8 O -0.48 -9.28 16.20 5.54 0.09 -9.19 16 9 C -0.13 -1.18 6.42 36.00 0.23 -0.95 16 10 S -0.15 -1.63 20.86 -107.50 -2.24 -3.87 16 11 C -0.08 -0.56 5.67 36.00 0.20 -0.36 16 12 C -0.06 -0.50 5.14 -104.59 -0.54 -1.03 16 13 C -0.09 -0.58 9.70 -39.59 -0.38 -0.96 16 14 C -0.12 -0.63 10.05 -39.58 -0.40 -1.03 16 15 C -0.10 -0.57 10.05 -39.59 -0.40 -0.96 16 16 C -0.11 -0.75 9.83 -39.55 -0.39 -1.14 16 17 C -0.02 -0.17 6.31 -39.50 -0.25 -0.42 16 18 Cl -0.06 -0.51 27.30 -51.86 -1.42 -1.93 16 19 C 0.00 0.04 3.09 -27.88 -0.09 -0.04 16 20 C -0.51 -13.59 8.20 -34.44 -0.28 -13.87 16 21 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 22 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 23 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 24 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.57 6.62 -51.93 -0.34 1.22 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 1.08 8.06 -51.93 -0.42 0.66 16 32 H 0.07 1.49 6.62 -51.93 -0.34 1.15 16 33 H 0.04 0.76 8.06 -51.93 -0.42 0.35 16 34 H 0.10 1.31 8.00 -52.49 -0.42 0.89 16 35 H 0.38 3.50 8.63 -182.59 -1.58 1.92 16 36 H 0.11 0.76 8.14 -51.92 -0.42 0.34 16 37 H 0.11 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.10 0.67 6.91 -51.92 -0.36 0.31 16 39 H 0.10 0.50 8.09 -51.93 -0.42 0.08 16 40 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 42 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 43 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 45 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 411.15 15.07 6.20 6.20 Total: -1.00 -34.70 411.15 -10.82 -45.52 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.93 Total: -1.45 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.14 Total: -13.91 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 1.29 Total: -37.85 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.24 Total: -3.87 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.42 Total: -1.93 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.70 -10.82 -45.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002056140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.156 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds