Wall clock time and date at job start Tue Mar 31 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34744 * 117.00181 * 2 1 4 4 O 1.21510 * 119.99870 * 359.97438 * 3 2 1 5 5 C 1.47426 * 120.00209 * 180.02562 * 3 2 1 6 6 C 1.40037 * 120.60248 * 2.05630 * 5 3 2 7 7 C 1.38325 * 118.34483 * 180.28824 * 6 5 3 8 8 C 1.38397 * 119.47216 * 359.73780 * 7 6 5 9 9 N 1.31847 * 121.19955 * 359.97438 * 8 7 6 10 10 C 1.32277 * 121.80511 * 0.02562 * 9 8 7 11 11 N 1.39130 * 119.80611 * 179.97438 * 10 9 8 12 12 C 1.35135 * 119.44170 * 89.88035 * 11 10 9 13 13 O 1.21587 * 120.90492 * 0.02562 * 12 11 10 14 14 C 1.47232 * 118.18856 * 180.29468 * 12 11 10 15 15 C 1.39436 * 121.95494 * 179.71857 * 14 12 11 16 16 C 1.38517 * 117.87192 * 179.97438 * 15 14 12 17 17 C 1.38520 * 119.44567 * 0.02562 * 16 15 14 18 18 N 1.31877 * 121.56793 * 359.43483 * 17 16 15 19 19 C 1.32230 * 121.50716 * 0.84567 * 18 17 16 20 20 N 1.38518 * 121.45549 * 179.13938 * 19 18 17 21 21 C 1.37203 * 119.61703 * 0.04889 * 20 19 18 22 22 H 1.08003 * 120.00079 * 138.54173 * 21 20 19 23 23 C 1.38933 * 119.99928 * 318.54105 * 21 20 19 24 24 N 1.31385 * 120.00048 * 340.33102 * 23 21 20 25 25 Si 1.86801 * 119.99988 * 160.33470 * 23 21 20 26 26 H 1.48495 * 109.47594 * 59.99553 * 25 23 21 27 27 H 1.48497 * 109.47077 * 180.02562 * 25 23 21 28 28 H 1.48509 * 109.46987 * 299.99866 * 25 23 21 29 29 C 1.34229 * 119.44454 * 269.89620 * 11 10 9 30 30 O 1.21542 * 118.51967 * 0.02562 * 29 11 10 31 31 H 1.09008 * 109.47018 * 60.00670 * 1 2 3 32 32 H 1.08998 * 109.47495 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47399 * 300.01134 * 1 2 3 34 34 H 1.08005 * 120.82532 * 0.02754 * 6 5 3 35 35 H 1.08003 * 120.26458 * 179.71486 * 7 6 5 36 36 H 1.08002 * 119.39875 * 179.97438 * 8 7 6 37 37 H 1.07999 * 121.06759 * 359.97438 * 15 14 12 38 38 H 1.07997 * 120.27603 * 180.02562 * 16 15 14 39 39 H 1.08000 * 119.21394 * 180.02562 * 17 16 15 40 40 H 0.96997 * 119.99413 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2196 -0.0005 5 6 3.5359 1.2777 -0.0006 6 6 4.3109 0.1121 -0.0444 7 6 5.6883 0.2386 -0.0368 8 6 6.2560 1.5000 0.0078 9 7 5.5077 2.5850 0.0427 10 6 4.1865 2.5210 0.0374 11 7 3.4372 3.6927 0.0758 12 6 3.0843 4.2937 -1.0819 13 8 3.4122 3.8243 -2.1545 14 6 2.2971 5.5358 -1.0090 15 6 1.8960 6.2236 -2.1536 16 6 1.1573 7.3834 -1.9867 17 6 0.8471 7.8150 -0.7075 18 7 1.2290 7.1414 0.3600 19 6 1.9402 6.0313 0.2587 20 7 2.3558 5.3341 1.3812 21 6 2.0252 5.7990 2.6291 22 1 1.7114 5.1078 3.3972 23 6 2.0942 7.1591 2.9044 24 7 2.8196 7.9474 2.1438 25 14 1.1556 7.8668 4.3562 26 1 1.6236 7.2228 5.6097 27 1 1.3928 9.3307 4.4327 28 1 -0.2963 7.6097 4.1798 29 6 3.0773 4.2072 1.2622 30 8 3.4209 3.6282 2.2741 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5140 0.8899 34 1 3.8447 -0.8615 -0.0789 35 1 6.3158 -0.6400 -0.0651 36 1 7.3316 1.5974 0.0140 37 1 2.1529 5.8636 -3.1389 38 1 0.8261 7.9465 -2.8467 39 1 0.2706 8.7196 -0.5817 40 1 2.8680 8.8968 2.3364 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002601985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:29 Heat of formation + Delta-G solvation = -36.534948 kcal Electronic energy + Delta-G solvation = -34561.390687 eV Core-core repulsion = 29922.038208 eV Total energy + Delta-G solvation = -4639.352478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.100 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.62868 -41.92488 -40.95711 -40.32441 -40.00039 -37.74414 -37.18968 -36.41475 -34.41783 -34.12840 -33.34661 -31.98383 -31.14226 -28.93727 -27.60179 -26.52044 -25.83661 -25.10176 -24.32314 -23.68252 -22.65486 -20.98441 -20.57055 -19.90588 -19.28416 -18.93032 -18.58040 -18.03201 -17.60702 -17.40853 -16.98364 -16.76822 -16.67931 -16.53006 -16.09231 -15.90662 -15.41375 -15.33977 -15.18589 -14.89078 -14.81137 -14.35730 -14.33273 -14.26423 -13.79144 -13.62218 -13.42524 -13.11733 -13.08714 -12.81425 -12.20989 -12.13258 -11.99417 -11.98934 -11.63562 -11.58462 -11.55948 -11.26143 -11.02163 -10.75345 -10.60946 -10.42927 -10.07775 -9.22204 -8.48544 -6.39840 -0.84504 -0.34499 -0.10430 0.24211 0.92000 1.16333 1.25078 1.36628 1.41759 1.47840 1.55005 1.96470 2.09143 2.40490 2.51271 2.89529 3.14690 3.19043 3.29179 3.36378 3.61733 3.68857 3.74004 3.89814 3.97762 4.12008 4.20082 4.20745 4.28731 4.30515 4.58121 4.61419 4.63521 4.77992 4.82943 4.93211 4.97845 5.01970 5.26203 5.33485 5.40303 5.74287 5.89735 6.14537 6.29670 6.40267 6.54460 6.58094 6.90826 7.29198 7.45247 8.58403 Molecular weight = 368.10amu Principal moments of inertia in cm(-1) A = 0.010524 B = 0.004361 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.065131 B = 6418.849640 C = 6836.383056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.342 6.342 3 C 0.506 3.494 4 O -0.528 6.528 5 C -0.183 4.183 6 C -0.005 4.005 7 C -0.146 4.146 8 C 0.141 3.859 9 N -0.522 5.522 10 C 0.378 3.622 11 N -0.504 5.504 12 C 0.579 3.421 13 O -0.537 6.537 14 C -0.295 4.295 15 C 0.016 3.984 16 C -0.214 4.214 17 C 0.161 3.839 18 N -0.484 5.484 19 C 0.396 3.604 20 N -0.358 5.358 21 C -0.384 4.384 22 H 0.082 0.918 23 C 0.053 3.947 24 N -0.849 5.849 25 Si 1.003 2.997 26 H -0.273 1.273 27 H -0.262 1.262 28 H -0.262 1.262 29 C 0.674 3.326 30 O -0.588 6.588 31 H 0.060 0.940 32 H 0.153 0.847 33 H 0.051 0.949 34 H 0.198 0.802 35 H 0.216 0.784 36 H 0.213 0.787 37 H 0.161 0.839 38 H 0.190 0.810 39 H 0.194 0.806 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -12.022 -8.706 14.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.258 6.258 3 C 0.351 3.649 4 O -0.419 6.419 5 C -0.189 4.189 6 C -0.031 4.031 7 C -0.165 4.165 8 C -0.017 4.017 9 N -0.233 5.233 10 C 0.154 3.846 11 N -0.245 5.245 12 C 0.375 3.625 13 O -0.415 6.415 14 C -0.305 4.305 15 C -0.011 4.011 16 C -0.235 4.235 17 C -0.003 4.003 18 N -0.198 5.198 19 C 0.163 3.837 20 N -0.065 5.065 21 C -0.510 4.510 22 H 0.100 0.900 23 C -0.158 4.158 24 N -0.479 5.479 25 Si 0.823 3.177 26 H -0.198 1.198 27 H -0.187 1.187 28 H -0.186 1.186 29 C 0.380 3.620 30 O -0.466 6.466 31 H 0.079 0.921 32 H 0.170 0.830 33 H 0.070 0.930 34 H 0.215 0.785 35 H 0.233 0.767 36 H 0.230 0.770 37 H 0.179 0.821 38 H 0.207 0.793 39 H 0.211 0.789 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.363 -11.082 -7.747 13.526 hybrid contribution -0.555 -0.276 0.116 0.630 sum -0.918 -11.358 -7.631 13.714 Atomic orbital electron populations 1.23645 0.73878 1.06463 1.02199 1.86467 1.25462 1.29906 1.83929 1.21059 0.88977 0.82294 0.72557 1.90904 1.67380 1.37427 1.46144 1.20258 0.91280 0.95394 1.11944 1.22423 0.94431 0.97439 0.88776 1.22892 0.94751 1.00495 0.98319 1.23897 1.01918 0.86782 0.89068 1.67256 1.04554 1.37357 1.14167 1.17963 0.88128 0.83817 0.94675 1.43530 1.48966 1.24623 1.07384 1.18468 0.78009 0.83849 0.82171 1.90644 1.56478 1.66831 1.27547 1.20245 1.13784 1.00606 0.95835 1.21522 0.90619 0.92408 0.96527 1.22337 1.03310 0.97988 0.99842 1.23676 0.91919 0.97383 0.87296 1.67361 1.12928 1.05152 1.34361 1.18751 0.90297 0.90406 0.84278 1.40496 1.40204 1.18739 1.07088 1.19418 1.50179 0.93295 0.88102 0.90044 1.26133 0.93899 0.95208 1.00511 1.69920 1.32176 1.06271 1.39524 0.84927 0.78959 0.77406 0.76377 1.19804 1.18652 1.18613 1.16148 0.79678 0.83771 0.82369 1.90737 1.59642 1.61277 1.34936 0.92125 0.82968 0.92999 0.78508 0.76687 0.77008 0.82116 0.79288 0.78891 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.57 113.37 1.20 1.90 16 2 O -0.34 -9.98 9.89 -56.54 -0.56 -10.54 16 3 C 0.51 20.15 7.90 70.24 0.55 20.70 16 4 O -0.53 -25.65 13.45 19.80 0.27 -25.39 16 5 C -0.18 -6.95 5.90 -19.90 -0.12 -7.07 16 6 C -0.01 -0.12 9.73 22.73 0.22 0.10 16 7 C -0.15 -2.54 10.09 22.33 0.23 -2.32 16 8 C 0.14 3.56 11.17 84.73 0.95 4.50 16 9 N -0.52 -21.43 10.37 -192.04 -1.99 -23.42 16 10 C 0.38 17.50 4.66 133.36 0.62 18.12 16 11 N -0.50 -27.03 1.42 -603.25 -0.86 -27.89 16 12 C 0.58 30.08 6.67 86.55 0.58 30.66 16 13 O -0.54 -27.25 16.63 -3.99 -0.07 -27.32 16 14 C -0.30 -14.53 5.89 -20.02 -0.12 -14.65 16 15 C 0.02 0.59 9.79 22.63 0.22 0.81 16 16 C -0.21 -6.45 10.10 22.40 0.23 -6.22 16 17 C 0.16 5.73 11.15 84.75 0.94 6.68 16 18 N -0.48 -23.62 7.09 -192.16 -1.36 -24.98 16 19 C 0.40 21.46 6.64 133.67 0.89 22.35 16 20 N -0.36 -21.61 2.70 -480.42 -1.30 -22.91 16 21 C -0.38 -23.42 8.57 84.02 0.72 -22.70 16 22 H 0.08 5.12 7.78 -2.91 -0.02 5.10 16 23 C 0.05 2.94 4.27 84.93 0.36 3.30 16 24 N -0.85 -47.53 11.45 21.66 0.25 -47.28 16 25 Si 1.00 43.31 29.60 68.60 2.03 45.34 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 28 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 29 C 0.67 40.48 7.13 179.36 1.28 41.76 16 30 O -0.59 -37.40 15.87 -3.85 -0.06 -37.46 16 31 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.15 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.20 2.82 7.70 -2.91 -0.02 2.80 16 35 H 0.22 0.99 8.06 -2.91 -0.02 0.97 16 36 H 0.21 3.23 8.06 -2.91 -0.02 3.20 16 37 H 0.16 5.16 7.86 -2.91 -0.02 5.14 16 38 H 0.19 3.54 8.06 -2.91 -0.02 3.51 16 39 H 0.19 5.05 8.06 -2.91 -0.02 5.02 16 40 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -97.07 358.31 6.23 -90.84 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 1.13 Total: 13.08 kcal Atomic # 6 Polarization: 89.17 SS G_CDS: 8.75 Total: 97.92 kcal Atomic # 7 Polarization: -141.21 SS G_CDS: -5.27 Total: -146.48 kcal Atomic # 8 Polarization: -100.29 SS G_CDS: -0.42 Total: -100.71 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -97.07 6.23 -90.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002601985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.308 kcal (2) G-P(sol) polarization free energy of solvation -97.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds