Wall clock time and date at job start Tue Mar 31 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35898 * 116.99845 * 2 1 4 4 C 1.38753 * 120.05679 * 4.93429 * 3 2 1 5 5 C 1.38121 * 119.94314 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.05822 * 0.02562 * 5 4 3 7 7 C 1.38250 * 120.10875 * 359.70267 * 6 5 4 8 8 C 1.38161 * 120.05638 * 0.55445 * 7 6 5 9 9 C 1.50698 * 120.02952 * 179.74509 * 8 7 6 10 10 N 1.46496 * 109.47267 * 260.17274 * 9 8 7 11 11 C 1.36669 * 119.78500 * 84.02482 * 10 9 8 12 12 S 1.76199 * 118.45906 * 359.97438 * 11 10 9 13 13 C 1.76206 * 99.99707 * 185.14939 * 12 11 10 14 14 H 1.08001 * 120.00004 * 5.08564 * 13 12 11 15 15 C 1.38800 * 119.99798 * 185.09209 * 13 12 11 16 16 N 1.31528 * 120.00062 * 174.86070 * 15 13 12 17 17 Si 1.86799 * 120.00087 * 354.85633 * 15 13 12 18 18 H 1.48502 * 109.47037 * 94.83501 * 17 15 13 19 19 H 1.48505 * 109.47204 * 214.83339 * 17 15 13 20 20 H 1.48504 * 109.47224 * 334.83421 * 17 15 13 21 21 N 1.30951 * 123.07737 * 179.97438 * 11 10 9 22 22 C 1.34773 * 121.64948 * 0.02562 * 21 11 10 23 23 C 1.39838 * 121.54477 * 179.97438 * 22 21 11 24 24 C 1.36602 * 119.79874 * 180.02562 * 23 22 21 25 25 C 1.38912 * 120.98111 * 0.02562 * 24 23 22 26 26 C 1.37788 * 120.59114 * 359.97438 * 25 24 23 27 27 C 1.39385 * 119.40473 * 0.02621 * 26 25 24 28 28 C 1.35341 * 119.79126 * 264.04551 * 10 9 8 29 29 O 1.21728 * 121.25429 * 359.72354 * 28 10 9 30 30 H 1.09003 * 109.46986 * 184.52947 * 1 2 3 31 31 H 1.08998 * 109.47467 * 304.52789 * 1 2 3 32 32 H 1.09001 * 109.47363 * 64.53400 * 1 2 3 33 33 H 1.08003 * 120.02898 * 359.97438 * 4 3 2 34 34 H 1.08008 * 119.97286 * 180.02562 * 5 4 3 35 35 H 1.07997 * 119.94410 * 179.97438 * 6 5 4 36 36 H 1.08001 * 119.97083 * 180.27329 * 7 6 5 37 37 H 1.09000 * 109.46933 * 140.17009 * 9 8 7 38 38 H 1.09005 * 109.46943 * 20.17890 * 9 8 7 39 39 H 0.96999 * 119.99884 * 179.97438 * 16 15 13 40 40 H 1.07991 * 120.10065 * 0.02872 * 23 22 21 41 41 H 1.08011 * 119.51009 * 179.97438 * 24 23 22 42 42 H 1.08008 * 119.70664 * 180.02562 * 25 24 23 43 43 H 1.07992 * 120.29938 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2953 2.3733 0.1033 5 6 1.9247 3.6027 0.1025 6 6 3.3017 3.6759 -0.0016 7 6 4.0522 2.5189 -0.0990 8 6 3.4271 1.2869 -0.1040 9 6 4.2454 0.0264 -0.2160 10 7 4.2140 -0.4550 -1.5993 11 6 5.0851 0.0607 -2.5175 12 16 6.2231 1.2990 -1.9921 13 6 6.9651 1.7080 -3.5371 14 1 6.5929 1.2648 -4.4490 15 6 8.0279 2.5995 -3.5822 16 7 8.6470 2.8278 -4.7200 17 14 8.5790 3.4753 -2.0270 18 1 9.6953 2.7206 -1.4030 19 1 9.0375 4.8463 -2.3670 20 1 7.4423 3.5555 -1.0748 21 7 5.1136 -0.3223 -3.7694 22 6 4.2722 -1.2641 -4.2401 23 6 4.3041 -1.6711 -5.5775 24 6 3.4343 -2.6285 -6.0167 25 6 2.5130 -3.2077 -5.1534 26 6 2.4568 -2.8279 -3.8301 27 6 3.3350 -1.8527 -3.3602 28 6 3.3223 -1.4071 -1.9598 29 8 2.5428 -1.8802 -1.1534 30 1 -0.3633 -1.0245 0.0812 31 1 -0.3634 0.5825 0.8466 32 1 -0.3634 0.4419 -0.9278 33 1 0.2197 2.3168 0.1834 34 1 1.3409 4.5078 0.1833 35 1 3.7919 4.6382 -0.0024 36 1 5.1279 2.5785 -0.1758 37 1 3.8305 -0.7359 0.4435 38 1 5.2755 0.2351 0.0729 39 1 9.3895 3.4511 -4.7516 40 1 5.0144 -1.2300 -6.2611 41 1 3.4628 -2.9391 -7.0508 42 1 1.8350 -3.9632 -5.5226 43 1 1.7384 -3.2810 -3.1632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002969986.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:31 Heat of formation + Delta-G solvation = 10.829322 kcal Electronic energy + Delta-G solvation = -31099.909254 eV Core-core repulsion = 27008.903859 eV Total energy + Delta-G solvation = -4091.005395 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 368.098 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.04576 -39.95397 -38.04515 -37.28487 -36.70892 -34.26385 -32.78001 -31.57861 -30.74494 -29.98531 -29.42801 -27.41834 -26.43045 -25.95090 -24.44079 -23.40341 -22.06882 -21.40392 -21.34600 -19.07648 -18.38079 -17.92927 -17.46502 -16.68042 -16.15855 -16.01768 -15.56149 -15.42248 -15.10445 -15.03051 -14.82546 -14.39623 -14.38815 -13.93133 -13.65613 -13.45815 -13.28602 -13.11692 -12.77473 -12.55914 -12.31448 -12.10052 -11.86642 -11.83483 -11.58402 -11.42994 -11.33952 -11.31043 -11.14277 -11.02026 -10.78831 -10.32186 -9.69249 -9.57636 -9.38310 -9.22212 -9.07860 -8.78034 -8.74198 -8.17173 -8.02481 -7.04121 -6.57356 -4.36640 0.99383 1.28196 1.32968 1.55635 2.04474 2.75993 3.00701 3.03146 3.05418 3.18349 3.23067 3.42181 3.89718 3.95170 4.19490 4.47686 4.68104 4.76750 4.83994 4.87678 5.00995 5.05030 5.11982 5.18227 5.21163 5.29644 5.33019 5.42505 5.53439 5.58097 5.59985 5.63966 5.80156 5.88431 5.90834 6.07543 6.30917 6.36408 6.45331 6.49403 6.54351 6.65071 6.75034 6.78243 6.89674 7.10863 7.24288 7.51692 7.68138 8.24617 8.54005 8.63203 8.80977 10.50518 Molecular weight = 368.10amu Principal moments of inertia in cm(-1) A = 0.007228 B = 0.005591 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3872.647340 B = 5006.646794 C = 8149.778031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.286 6.286 3 C 0.146 3.854 4 C -0.222 4.222 5 C -0.073 4.073 6 C -0.162 4.162 7 C -0.048 4.048 8 C -0.148 4.148 9 C 0.145 3.855 10 N -0.529 5.529 11 C 0.360 3.640 12 S 0.074 5.926 13 C -0.526 4.526 14 H 0.132 0.868 15 C 0.102 3.898 16 N -0.849 5.849 17 Si 0.840 3.160 18 H -0.262 1.262 19 H -0.263 1.263 20 H -0.239 1.239 21 N -0.528 5.528 22 C 0.196 3.804 23 C -0.128 4.128 24 C -0.072 4.072 25 C -0.174 4.174 26 C -0.034 4.034 27 C -0.229 4.229 28 C 0.553 3.447 29 O -0.506 6.506 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.140 0.860 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.276 0.724 40 H 0.134 0.866 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.324 -2.850 7.922 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.197 6.197 3 C 0.099 3.901 4 C -0.241 4.241 5 C -0.091 4.091 6 C -0.180 4.180 7 C -0.067 4.067 8 C -0.150 4.150 9 C 0.022 3.978 10 N -0.254 5.254 11 C -0.007 4.007 12 S 0.317 5.683 13 C -0.674 4.674 14 H 0.149 0.851 15 C -0.110 4.110 16 N -0.483 5.483 17 Si 0.664 3.336 18 H -0.186 1.186 19 H -0.188 1.188 20 H -0.164 1.164 21 N -0.255 5.255 22 C 0.077 3.923 23 C -0.149 4.149 24 C -0.092 4.092 25 C -0.195 4.195 26 C -0.053 4.053 27 C -0.238 4.238 28 C 0.346 3.654 29 O -0.381 6.381 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.157 0.843 37 H 0.128 0.872 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.152 0.848 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.722 -2.427 8.841 14.881 hybrid contribution -0.633 -0.063 -0.386 0.744 sum -12.355 -2.490 8.455 15.177 Atomic orbital electron populations 1.22970 0.79248 1.03602 1.00511 1.86393 1.20476 1.25225 1.87649 1.18968 0.91810 0.84914 0.94366 1.21161 0.99845 0.92464 1.10585 1.20945 0.94730 0.96742 0.96678 1.21040 0.93818 0.98546 1.04645 1.21253 1.00859 0.90737 0.93819 1.19287 0.90975 0.95558 1.09174 1.20527 1.00767 0.94565 0.81916 1.46516 1.32000 1.35896 1.10983 1.25374 0.92412 0.95522 0.87363 1.82879 1.35990 1.32281 1.17187 1.22912 1.20017 1.31815 0.92640 0.85068 1.24776 0.94308 0.95441 0.96487 1.69865 1.20104 1.33005 1.25312 0.87066 0.81566 0.81194 0.83731 1.18615 1.18754 1.16370 1.69077 1.27393 1.19200 1.09807 1.18913 0.89247 0.90282 0.93866 1.20595 1.01203 0.99266 0.93875 1.20868 0.94035 0.94856 0.99432 1.20910 1.01742 1.03252 0.93553 1.20840 0.95661 0.93477 0.95339 1.20564 1.04247 1.05437 0.93516 1.18327 0.79886 0.78738 0.88477 1.90800 1.38011 1.55813 1.53517 0.88443 0.93209 0.93271 0.85729 0.86036 0.85673 0.84254 0.87209 0.88240 0.91285 0.84816 0.85896 0.86123 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.88 101.05 1.00 1.37 16 2 O -0.29 -4.50 6.97 -41.76 -0.29 -4.79 16 3 C 0.15 2.28 6.65 -39.22 -0.26 2.02 16 4 C -0.22 -2.95 9.07 -39.43 -0.36 -3.31 16 5 C -0.07 -0.91 10.04 -39.61 -0.40 -1.31 16 6 C -0.16 -2.21 10.04 -39.56 -0.40 -2.61 16 7 C -0.05 -0.73 8.72 -39.61 -0.35 -1.08 16 8 C -0.15 -2.40 5.37 -104.48 -0.56 -2.96 16 9 C 0.14 2.40 4.84 -5.20 -0.03 2.37 16 10 N -0.53 -10.30 2.62 -118.67 -0.31 -10.61 16 11 C 0.36 7.78 7.71 -88.50 -0.68 7.10 16 12 S 0.07 1.58 14.69 -107.50 -1.58 0.01 16 13 C -0.53 -13.74 9.74 30.94 0.30 -13.44 16 14 H 0.13 3.83 6.76 -52.49 -0.35 3.48 16 15 C 0.10 2.63 5.50 -17.47 -0.10 2.54 16 16 N -0.85 -23.32 13.96 55.49 0.77 -22.54 16 17 Si 0.84 17.93 27.78 -169.99 -4.72 13.21 16 18 H -0.26 -5.53 7.11 56.52 0.40 -5.12 16 19 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.24 -4.65 6.68 56.52 0.38 -4.27 16 21 N -0.53 -12.13 8.31 -10.89 -0.09 -12.22 16 22 C 0.20 4.04 6.62 -84.78 -0.56 3.48 16 23 C -0.13 -2.28 9.98 -39.57 -0.40 -2.68 16 24 C -0.07 -1.04 9.95 -39.92 -0.40 -1.44 16 25 C -0.17 -2.45 10.02 -39.50 -0.40 -2.84 16 26 C -0.03 -0.55 9.68 -39.32 -0.38 -0.93 16 27 C -0.23 -4.44 5.90 -104.74 -0.62 -5.06 16 28 C 0.55 11.02 7.54 -12.47 -0.09 10.92 16 29 O -0.51 -10.09 13.62 -17.18 -0.23 -10.33 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.46 7.16 -51.93 -0.37 0.09 16 32 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.12 1.36 6.28 -52.48 -0.33 1.03 16 34 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 35 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.14 2.16 6.12 -52.49 -0.32 1.84 16 37 H 0.11 1.78 6.99 -51.93 -0.36 1.41 16 38 H 0.10 1.50 6.64 -51.93 -0.35 1.15 16 39 H 0.28 6.97 8.31 -40.82 -0.34 6.64 16 40 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 41 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 42 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 43 H 0.13 1.89 7.83 -52.49 -0.41 1.48 16 LS Contribution 368.72 15.07 5.56 5.56 Total: -1.00 -30.56 368.72 -10.18 -40.73 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -4.61 Total: 8.84 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -4.67 Total: -7.86 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.37 Total: -45.37 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.53 Total: -15.11 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -4.72 Total: 13.21 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.58 Total: 0.01 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.56 -10.18 -40.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002969986.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.561 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds