Wall clock time and date at job start Tue Mar 31 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.47237 * 2 1 4 4 C 1.35947 * 116.99806 * 180.02562 * 3 2 1 5 5 C 1.38576 * 120.08541 * 0.02562 * 4 3 2 6 6 C 1.38225 * 120.01333 * 180.02562 * 5 4 3 7 7 C 1.38293 * 120.17650 * 359.97438 * 6 5 4 8 8 C 1.38184 * 120.17011 * 359.97438 * 7 6 5 9 9 C 1.38728 * 119.98119 * 0.02562 * 8 7 6 10 10 N 1.40276 * 120.08388 * 179.97438 * 9 8 7 11 11 C 1.36932 * 127.17997 * 269.66240 * 10 9 8 12 12 S 1.76202 * 126.40386 * 0.02923 * 11 10 9 13 13 C 1.76203 * 99.99753 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99991 * 359.97438 * 13 12 11 15 15 C 1.38646 * 119.99781 * 179.97438 * 13 12 11 16 16 N 1.31649 * 119.99802 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99925 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47417 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.47091 * 120.00351 * 17 15 13 20 20 H 1.48496 * 109.47319 * 239.99996 * 17 15 13 21 21 N 1.31607 * 107.19358 * 179.87295 * 11 10 9 22 22 N 1.28510 * 110.07040 * 0.40904 * 21 11 10 23 23 C 1.31538 * 109.99274 * 359.74327 * 22 21 11 24 24 C 1.47760 * 126.44638 * 179.97438 * 23 22 21 25 25 C 1.40053 * 120.56448 * 345.03290 * 24 23 22 26 26 C 1.38342 * 118.28455 * 179.97438 * 25 24 23 27 27 C 1.38357 * 119.31156 * 359.97438 * 26 25 24 28 28 N 1.31913 * 121.09584 * 0.02562 * 27 26 25 29 29 C 1.31700 * 121.87864 * 359.71962 * 28 27 26 30 30 H 1.08997 * 109.47077 * 59.99521 * 1 2 3 31 31 H 1.08998 * 109.47079 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46598 * 299.99706 * 1 2 3 33 33 H 1.09011 * 109.46940 * 240.00157 * 2 1 3 34 34 H 1.08997 * 109.47077 * 120.00479 * 2 1 3 35 35 H 1.08000 * 119.99354 * 359.97438 * 5 4 3 36 36 H 1.07992 * 119.91140 * 179.70268 * 6 5 4 37 37 H 1.08000 * 119.91591 * 180.02562 * 7 6 5 38 38 H 1.07991 * 120.01058 * 179.97438 * 8 7 6 39 39 H 0.97000 * 119.99930 * 179.97438 * 16 15 13 40 40 H 1.07998 * 120.85665 * 0.02562 * 25 24 23 41 41 H 1.07999 * 120.34112 * 180.02562 * 26 25 24 42 42 H 1.08008 * 119.45374 * 179.97438 * 27 26 25 43 43 H 1.08005 * 119.72215 * 180.29506 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3542 1.5253 -0.0005 5 6 4.1999 0.4275 -0.0016 6 6 5.5700 0.6103 -0.0016 7 6 6.1010 1.8872 -0.0011 8 6 5.2645 2.9871 -0.0011 9 6 3.8884 2.8116 -0.0011 10 7 3.0373 3.9267 -0.0006 11 6 2.5302 4.5801 1.0907 12 16 2.8251 4.1779 2.7807 13 6 1.8643 5.4294 3.5651 14 1 1.3214 6.1471 2.9680 15 6 1.8054 5.4928 4.9489 16 7 2.4669 4.6177 5.6766 17 14 0.7874 6.8200 5.7805 18 1 0.1454 7.6717 4.7473 19 1 -0.2608 6.1865 6.6204 20 1 1.6678 7.6565 6.6351 21 7 1.7841 5.5667 0.6414 22 7 1.7834 5.5692 -0.6437 23 6 2.5334 4.5877 -1.0958 24 6 2.7862 4.2575 -2.5136 25 6 1.9820 4.7977 -3.5250 26 6 2.2611 4.4573 -4.8365 27 6 3.3158 3.6029 -5.1048 28 7 4.0568 3.1089 -4.1317 29 6 3.8344 3.4066 -2.8682 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.7884 -0.5710 -0.0016 36 1 6.2276 -0.2464 0.0024 37 1 7.1721 2.0251 -0.0015 38 1 5.6820 3.9831 -0.0003 39 1 2.4260 4.6622 6.6447 40 1 1.1655 5.4634 -3.2872 41 1 1.6625 4.8550 -5.6426 42 1 3.5355 3.3353 -6.1279 43 1 4.4660 2.9859 -2.0997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003346540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:06 Heat of formation + Delta-G solvation = 105.118193 kcal Electronic energy + Delta-G solvation = -30665.079457 eV Core-core repulsion = 26610.455485 eV Total energy + Delta-G solvation = -4054.623971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 368.105 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.25664 -40.20025 -39.85982 -37.73805 -34.52820 -33.03905 -32.67896 -31.95555 -31.70616 -30.35210 -29.11061 -28.92032 -25.73817 -24.36520 -24.13643 -23.77748 -23.01848 -21.85988 -21.39137 -20.59064 -18.86824 -17.97407 -17.42476 -16.94413 -16.42197 -16.22044 -16.13887 -15.75699 -15.20543 -15.10475 -14.94892 -14.73144 -14.31049 -13.87218 -13.82631 -13.56601 -13.46976 -13.08056 -13.02000 -12.70004 -12.31733 -12.18834 -11.86545 -11.80452 -11.52209 -11.18944 -11.17772 -11.07438 -10.86508 -10.70549 -10.40128 -10.27978 -10.10204 -9.88934 -9.67692 -9.55636 -9.29122 -9.01824 -8.83459 -8.45839 -8.31915 -6.75264 -6.48736 -4.22127 0.75676 0.95931 1.22027 1.25847 2.34774 2.46503 3.02257 3.17018 3.20651 3.23985 3.34954 3.46544 3.48406 3.94367 4.00660 4.26197 4.55842 4.62110 4.72430 4.80521 4.81567 4.90847 4.92919 4.95395 4.98569 5.02402 5.04707 5.10905 5.18900 5.29514 5.36996 5.48301 5.59776 5.65812 5.71059 5.90842 5.96517 6.04532 6.07382 6.12564 6.17096 6.28699 6.37962 6.51670 6.57548 6.64393 7.14455 7.52311 7.55782 7.89250 8.36217 9.03307 9.34240 10.59347 Molecular weight = 368.10amu Principal moments of inertia in cm(-1) A = 0.009402 B = 0.003765 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.500205 B = 7435.617265 C = 8472.934326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.299 6.299 4 C 0.157 3.843 5 C -0.204 4.204 6 C -0.062 4.062 7 C -0.147 4.147 8 C -0.064 4.064 9 C 0.083 3.917 10 N -0.423 5.423 11 C 0.191 3.809 12 S 0.155 5.845 13 C -0.535 4.535 14 H 0.106 0.894 15 C 0.077 3.923 16 N -0.877 5.877 17 Si 0.931 3.069 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.277 1.277 21 N -0.303 5.303 22 N -0.262 5.262 23 C 0.178 3.822 24 C -0.035 4.035 25 C -0.046 4.046 26 C -0.169 4.169 27 C 0.089 3.911 28 N -0.478 5.478 29 C 0.099 3.901 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.274 0.726 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.156 0.844 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.233 -11.327 -15.881 19.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.211 6.211 4 C 0.109 3.891 5 C -0.223 4.223 6 C -0.080 4.080 7 C -0.166 4.166 8 C -0.083 4.083 9 C -0.009 4.009 10 N -0.117 5.117 11 C -0.177 4.177 12 S 0.389 5.611 13 C -0.684 4.684 14 H 0.124 0.876 15 C -0.133 4.133 16 N -0.512 5.512 17 Si 0.756 3.244 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.203 1.203 21 N -0.149 5.149 22 N -0.103 5.103 23 C -0.088 4.088 24 C -0.040 4.040 25 C -0.074 4.074 26 C -0.189 4.189 27 C -0.069 4.069 28 N -0.186 5.186 29 C -0.060 4.060 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.083 0.917 40 H 0.163 0.837 41 H 0.156 0.844 42 H 0.173 0.827 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.481 -11.420 -15.253 19.574 hybrid contribution -1.152 0.940 0.336 1.524 sum 3.330 -10.480 -14.917 18.532 Atomic orbital electron populations 1.21765 0.92497 1.02687 1.04005 1.22864 0.96336 0.81615 1.01306 1.86249 1.17914 1.29564 1.87408 1.19081 0.83429 0.92598 0.94036 1.21182 0.94251 0.97717 1.09151 1.21081 0.94165 0.97580 0.95174 1.20959 1.00150 0.91563 1.03943 1.21187 0.90414 1.00738 0.95985 1.16774 0.89086 0.82942 1.12092 1.43289 1.38932 1.24156 1.05330 1.28612 0.97184 0.93570 0.98380 1.83617 1.58351 1.39358 0.79758 1.23305 1.34376 1.16943 0.93777 0.87595 1.25065 0.95434 0.96847 0.95917 1.69965 1.39866 1.34596 1.06763 0.85889 0.79275 0.80231 0.78983 1.18774 1.20351 1.20313 1.74805 1.20465 1.18599 1.01023 1.74212 1.15312 1.16089 1.04710 1.22326 1.02301 0.96138 0.87989 1.18515 0.97624 0.99383 0.88474 1.21661 0.97752 0.96562 0.91432 1.22065 0.99620 1.00179 0.96992 1.22825 0.91651 0.93779 0.98633 1.67676 1.27965 1.22755 1.00187 1.23218 0.94871 0.94233 0.93689 0.91689 0.90313 0.90972 0.92083 0.91540 0.84563 0.84911 0.84609 0.84390 0.91661 0.83666 0.84361 0.82716 0.82521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 37.16 0.38 -1.27 16 2 C 0.05 0.63 5.46 37.16 0.20 0.83 16 3 O -0.30 -4.97 9.88 -19.57 -0.19 -5.16 16 4 C 0.16 2.46 6.70 -39.07 -0.26 2.20 16 5 C -0.20 -2.43 9.04 -39.46 -0.36 -2.79 16 6 C -0.06 -0.64 10.04 -39.57 -0.40 -1.03 16 7 C -0.15 -1.64 10.04 -39.58 -0.40 -2.03 16 8 C -0.06 -0.92 8.35 -39.42 -0.33 -1.25 16 9 C 0.08 1.43 3.43 -83.42 -0.29 1.14 16 10 N -0.42 -8.70 2.60 -57.99 -0.15 -8.85 16 11 C 0.19 4.63 8.03 -87.70 -0.70 3.92 16 12 S 0.15 3.98 21.58 -107.50 -2.32 1.66 16 13 C -0.54 -15.15 9.37 30.88 0.29 -14.86 16 14 H 0.11 3.10 6.92 -52.49 -0.36 2.74 16 15 C 0.08 2.10 5.49 -17.48 -0.10 2.00 16 16 N -0.88 -24.52 13.22 55.48 0.73 -23.78 16 17 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 18 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 21 N -0.30 -7.80 11.03 30.81 0.34 -7.46 16 22 N -0.26 -6.06 12.04 32.60 0.39 -5.67 16 23 C 0.18 3.62 7.72 -153.65 -1.19 2.43 16 24 C -0.03 -0.58 5.89 -104.82 -0.62 -1.20 16 25 C -0.05 -0.65 9.84 -38.86 -0.38 -1.03 16 26 C -0.17 -1.83 10.10 -39.50 -0.40 -2.23 16 27 C 0.09 1.00 11.17 -17.47 -0.20 0.80 16 28 N -0.48 -6.68 10.35 -12.89 -0.13 -6.82 16 29 C 0.10 1.52 10.46 -17.11 -0.18 1.35 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.58 7.66 -51.92 -0.40 0.19 16 34 H 0.07 0.70 7.67 -51.93 -0.40 0.30 16 35 H 0.14 1.26 6.30 -52.49 -0.33 0.93 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.15 1.98 8.01 -52.49 -0.42 1.56 16 41 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.16 1.19 8.06 -52.48 -0.42 0.77 16 43 H 0.16 2.38 4.15 -52.48 -0.22 2.16 16 LS Contribution 386.71 15.07 5.83 5.83 Total: -1.00 -34.45 386.71 -10.09 -44.54 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -4.65 Total: 2.41 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -4.91 Total: -13.02 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 1.18 Total: -52.58 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.19 Total: -5.16 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -2.32 Total: 1.66 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.45 -10.09 -44.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003346540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.656 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds