Wall clock time and date at job start Tue Mar 31 2020 06:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31544 * 1 3 3 Si 1.86800 * 120.00097 * 2 1 4 4 H 1.48507 * 109.46922 * 240.00316 * 3 2 1 5 5 H 1.48502 * 109.47266 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47120 * 120.00189 * 3 2 1 7 7 C 1.38664 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99959 * 179.97438 * 7 2 1 9 9 O 1.34807 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.35596 * 117.00112 * 185.07720 * 9 7 2 11 11 C 1.38755 * 120.15467 * 354.40430 * 10 9 7 12 12 C 1.38095 * 120.07825 * 180.28206 * 11 10 9 13 13 C 1.38519 * 120.38947 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.31731 * 0.02562 * 13 12 11 15 15 C 1.39625 * 119.91467 * 359.97438 * 14 13 12 16 16 C 1.47448 * 120.19642 * 180.02562 * 15 14 13 17 17 N 1.28519 * 125.42291 * 180.02562 * 16 15 14 18 18 O 1.40734 * 113.70826 * 179.97438 * 17 16 15 19 19 C 1.43285 * 109.60206 * 359.92302 * 18 17 16 20 20 H 1.08998 * 112.90003 * 236.61378 * 19 18 17 21 21 C 1.55832 * 108.41197 * 110.79239 * 19 18 17 22 22 H 1.09001 * 115.82572 * 50.60122 * 21 19 18 23 23 C 1.56881 * 100.76804 * 283.66057 * 21 19 18 24 24 C 1.56880 * 96.09668 * 306.32500 * 23 21 19 25 25 H 1.08999 * 116.12022 * 180.34043 * 24 23 21 26 26 C 1.51096 * 125.41583 * 359.69643 * 16 15 14 27 27 H 1.09007 * 112.89303 * 302.84294 * 26 16 15 28 28 C 1.55825 * 100.77795 * 306.29332 * 24 23 21 29 29 H 1.08994 * 112.99157 * 157.31160 * 28 24 23 30 30 C 1.51186 * 108.42864 * 284.20683 * 28 24 23 31 31 O 1.21228 * 125.28321 * 290.45559 * 30 28 24 32 32 N 1.33786 * 109.43252 * 110.48932 * 30 28 24 33 33 C 1.33797 * 114.53494 * 359.97122 * 32 30 28 34 34 O 1.21229 * 125.28306 * 180.02562 * 33 32 30 35 35 C 1.51186 * 109.42549 * 359.97438 * 33 32 30 36 36 H 1.08997 * 113.62914 * 123.09302 * 35 33 32 37 37 H 0.97005 * 119.99793 * 0.02562 * 1 2 3 38 38 H 1.08005 * 119.96432 * 0.28015 * 11 10 9 39 39 H 1.08003 * 119.80130 * 180.02562 * 12 11 10 40 40 H 1.08004 * 119.83624 * 179.97438 * 13 12 11 41 41 H 1.08005 * 120.04392 * 180.02562 * 14 13 12 42 42 H 1.08999 * 112.02033 * 63.06977 * 23 21 19 43 43 H 1.09002 * 112.02695 * 189.58018 * 23 21 19 44 44 H 0.96999 * 122.73813 * 179.97438 * 32 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1032 1.6964 -1.2126 5 1 1.2845 2.7465 -0.0006 6 1 3.1032 1.6963 1.2124 7 6 2.0087 -1.2009 -0.0005 8 1 3.0887 -1.2009 -0.0010 9 8 1.3347 -2.3683 -0.0005 10 6 2.0691 -3.5032 0.1058 11 6 3.4552 -3.4404 0.0917 12 6 4.2015 -4.5977 0.1943 13 6 3.5750 -5.8274 0.3124 14 6 2.1986 -5.9087 0.3281 15 6 1.4313 -4.7467 0.2252 16 6 -0.0410 -4.8263 0.2420 17 7 -0.8421 -3.8253 0.1538 18 8 -2.2024 -4.1838 0.1953 19 6 -2.3209 -5.6058 0.3263 20 1 -2.9119 -6.0573 -0.4705 21 6 -2.8760 -5.9245 1.7471 22 1 -3.7727 -5.3785 2.0401 23 6 -1.5932 -5.6963 2.6209 24 6 -0.6628 -6.6616 1.8063 25 1 0.3631 -6.7537 2.1630 26 6 -0.8478 -6.0985 0.3586 27 1 -0.6194 -6.8190 -0.4269 28 6 -1.5091 -7.9697 1.8285 29 1 -1.2609 -8.6513 1.0150 30 6 -1.3882 -8.5939 3.2002 31 8 -0.3864 -9.1073 3.6501 32 7 -2.5587 -8.4924 3.8402 33 6 -3.5235 -7.8843 3.1406 34 8 -4.6543 -7.6884 3.5312 35 6 -2.9840 -7.4783 1.7879 36 1 -3.5498 -7.8877 0.9510 37 1 -0.4850 0.8401 -0.0004 38 1 3.9509 -2.4852 0.0004 39 1 5.2801 -4.5436 0.1833 40 1 4.1674 -6.7270 0.3916 41 1 1.7147 -6.8698 0.4208 42 1 -1.2481 -4.6632 2.5781 43 1 -1.7329 -6.0334 3.6480 44 1 -2.6967 -8.8320 4.7382 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005324497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:26 Heat of formation + Delta-G solvation = -18.066278 kcal Electronic energy + Delta-G solvation = -34065.766388 eV Core-core repulsion = 29530.755115 eV Total energy + Delta-G solvation = -4535.011273 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.125 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.14220 -40.55921 -39.04496 -38.90586 -37.04755 -36.49075 -35.45548 -33.40238 -32.37208 -30.27320 -29.88787 -29.56108 -28.66376 -28.04080 -25.49656 -25.00283 -23.02617 -22.31841 -21.95700 -21.32219 -19.86573 -19.70668 -19.47823 -18.21701 -18.07813 -17.33525 -17.00738 -16.52309 -16.38421 -15.94704 -15.26199 -15.10538 -14.90204 -14.68143 -14.43955 -14.32972 -14.22210 -13.88937 -13.78106 -13.28136 -12.96842 -12.76470 -12.59386 -12.48346 -12.13365 -11.88783 -11.74709 -11.60855 -11.49782 -11.40907 -11.12744 -11.07437 -10.95507 -10.90411 -10.85877 -10.76710 -10.63201 -10.51436 -10.33766 -9.81881 -9.42525 -9.34121 -8.89755 -8.03031 -7.26169 -6.48626 -4.08399 1.15351 1.50655 2.26383 2.32957 2.44070 2.96563 3.09557 3.11181 3.13872 3.41553 3.70763 3.77452 3.82879 3.89826 4.04964 4.19777 4.36211 4.51460 4.53793 4.66413 4.76274 4.85226 4.94362 5.00774 5.02922 5.12306 5.28025 5.31771 5.34245 5.51430 5.59289 5.62677 5.67413 5.70853 5.73607 5.86726 5.96258 6.00323 6.11356 6.25822 6.38696 6.54867 6.68291 6.92958 6.93692 7.07310 7.21875 7.26384 7.50739 7.64160 7.88656 8.28541 8.91089 9.58616 10.64114 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.012660 B = 0.003232 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.243411 B = 8659.947556 C =10111.659658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.047 3.953 3 Si 0.938 3.062 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.401 4.401 8 H 0.093 0.907 9 O -0.131 6.131 10 C 0.170 3.830 11 C -0.233 4.233 12 C -0.056 4.056 13 C -0.222 4.222 14 C -0.041 4.041 15 C -0.136 4.136 16 C 0.125 3.875 17 N -0.230 5.230 18 O -0.195 6.195 19 C 0.043 3.957 20 H 0.110 0.890 21 C -0.087 4.087 22 H 0.125 0.875 23 C -0.140 4.140 24 C -0.067 4.067 25 H 0.127 0.873 26 C -0.104 4.104 27 H 0.117 0.883 28 C -0.126 4.126 29 H 0.140 0.860 30 C 0.538 3.462 31 O -0.476 6.476 32 N -0.681 5.681 33 C 0.539 3.461 34 O -0.479 6.479 35 C -0.125 4.125 36 H 0.139 0.861 37 H 0.272 0.728 38 H 0.131 0.869 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 -16.321 2.346 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.162 4.162 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.477 4.477 8 H 0.110 0.890 9 O -0.029 6.029 10 C 0.110 3.890 11 C -0.252 4.252 12 C -0.076 4.076 13 C -0.241 4.241 14 C -0.061 4.061 15 C -0.139 4.139 16 C -0.063 4.063 17 N 0.028 4.972 18 O -0.213 6.213 19 C -0.017 4.017 20 H 0.128 0.872 21 C -0.106 4.106 22 H 0.143 0.857 23 C -0.177 4.177 24 C -0.087 4.087 25 H 0.145 0.855 26 C -0.125 4.125 27 H 0.135 0.865 28 C -0.148 4.148 29 H 0.158 0.842 30 C 0.325 3.675 31 O -0.347 6.347 32 N -0.347 5.347 33 C 0.327 3.673 34 O -0.350 6.350 35 C -0.147 4.147 36 H 0.157 0.843 37 H 0.082 0.918 38 H 0.148 0.852 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.115 0.885 43 H 0.090 0.910 44 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -3.073 -14.925 2.488 15.440 hybrid contribution 0.486 -0.409 0.560 0.847 sum -2.588 -15.334 3.048 15.847 Atomic orbital electron populations 1.70109 1.05797 1.27913 1.42127 1.25339 0.95820 0.98823 0.96199 0.85828 0.78838 0.79825 0.79244 1.19411 1.20154 1.19418 1.21382 0.91844 0.80903 1.53601 0.88961 1.84087 1.33742 1.11086 1.73987 1.19366 0.90131 0.87481 0.91978 1.21134 0.93361 0.99313 1.11397 1.20900 0.98707 0.92320 0.95624 1.20469 0.93955 0.97151 1.12542 1.20674 0.93561 0.95474 0.96413 1.16740 0.86732 0.91911 1.18512 1.23686 0.94397 0.90505 0.97703 1.78860 0.86625 1.19398 1.12364 1.91038 1.19260 1.18767 1.92209 1.24421 0.95153 0.85798 0.96282 0.87199 1.23854 0.99601 0.90806 0.96317 0.85716 1.23820 0.94239 1.01881 0.97756 1.23664 0.99661 0.90724 0.94629 0.85474 1.23580 0.92418 0.98383 0.98105 0.86517 1.23322 0.95960 0.99389 0.96091 0.84228 1.20630 0.81765 0.76858 0.88212 1.90818 1.30737 1.41065 1.72082 1.44756 1.14082 1.55354 1.20475 1.20603 0.84001 0.74976 0.87740 1.90812 1.17867 1.51771 1.74506 1.23219 0.95884 0.99044 0.96504 0.84308 0.91754 0.85160 0.87211 0.87114 0.86586 0.88469 0.90982 0.74573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.75 13.67 55.48 0.76 -22.99 16 2 C 0.05 1.24 5.49 -17.52 -0.10 1.14 16 3 Si 0.94 19.87 29.55 -169.99 -5.02 14.85 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.40 -10.76 9.49 30.89 0.29 -10.46 16 8 H 0.09 2.26 5.21 -52.49 -0.27 1.99 16 9 O -0.13 -3.56 8.04 0.59 0.00 -3.55 16 10 C 0.17 3.87 6.66 -38.63 -0.26 3.61 16 11 C -0.23 -4.69 9.16 -39.44 -0.36 -5.05 16 12 C -0.06 -0.93 10.03 -39.53 -0.40 -1.33 16 13 C -0.22 -3.37 10.03 -39.61 -0.40 -3.77 16 14 C -0.04 -0.63 8.97 -39.19 -0.35 -0.99 16 15 C -0.14 -2.62 5.88 -104.87 -0.62 -3.24 16 16 C 0.13 2.31 5.66 -80.03 -0.45 1.86 16 17 N -0.23 -5.15 10.47 35.03 0.37 -4.78 16 18 O -0.20 -3.79 11.70 -11.06 -0.13 -3.92 16 19 C 0.04 0.56 4.24 -23.96 -0.10 0.46 16 20 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 21 C -0.09 -0.97 4.18 -85.51 -0.36 -1.33 16 22 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 23 C -0.14 -1.78 5.90 -22.53 -0.13 -1.91 16 24 C -0.07 -0.74 3.45 -85.17 -0.29 -1.04 16 25 H 0.13 1.48 7.14 -51.93 -0.37 1.11 16 26 C -0.10 -1.31 2.74 -88.47 -0.24 -1.55 16 27 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 28 C -0.13 -1.02 3.54 -88.69 -0.31 -1.33 16 29 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 30 C 0.54 5.16 6.99 -11.19 -0.08 5.08 16 31 O -0.48 -6.02 18.02 5.60 0.10 -5.92 16 32 N -0.68 -5.77 5.23 -11.51 -0.06 -5.83 16 33 C 0.54 5.21 7.00 -11.18 -0.08 5.13 16 34 O -0.48 -6.12 18.02 5.60 0.10 -6.02 16 35 C -0.13 -1.02 3.54 -88.70 -0.31 -1.33 16 36 H 0.14 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.13 2.62 5.64 -52.48 -0.30 2.33 16 39 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 40 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 41 H 0.12 1.39 6.75 -52.48 -0.35 1.04 16 42 H 0.10 1.61 7.02 -51.93 -0.36 1.24 16 43 H 0.07 0.85 6.77 -51.93 -0.35 0.49 16 44 H 0.41 2.87 8.96 -40.82 -0.37 2.50 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -34.18 361.61 -7.45 -41.63 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -4.47 Total: 7.11 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -4.55 Total: -16.04 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 1.07 Total: -33.59 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.08 Total: -19.41 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.18 -7.45 -41.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005324497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.565 kcal (2) G-P(sol) polarization free energy of solvation -34.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds