Wall clock time and date at job start Tue Mar 31 2020 06:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38288 * 119.96763 * 2 1 4 4 C 1.38285 * 120.14137 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.96210 * 179.97438 * 4 3 2 6 6 C 1.38104 * 120.07214 * 359.95451 * 4 3 2 7 7 C 1.38876 * 119.92867 * 0.02562 * 6 4 3 8 8 N 1.39933 * 120.06665 * 180.02562 * 7 6 4 9 9 C 1.46493 * 120.00049 * 292.12405 * 8 7 6 10 10 C 1.50700 * 109.47397 * 270.00177 * 9 8 7 11 11 H 1.08003 * 119.99931 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00574 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99394 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00535 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47118 * 89.99150 * 14 12 10 16 16 H 1.48495 * 109.47477 * 209.99630 * 14 12 10 17 17 H 1.48502 * 109.47206 * 329.99700 * 14 12 10 18 18 C 1.34775 * 119.99544 * 112.12824 * 8 7 6 19 19 O 1.21284 * 120.00458 * 355.26517 * 18 8 7 20 20 C 1.50708 * 119.99845 * 175.26316 * 18 8 7 21 21 O 1.45200 * 109.47239 * 180.02562 * 20 18 8 22 22 C 1.34677 * 116.99883 * 180.02562 * 21 20 18 23 23 O 1.21420 * 120.00156 * 359.97438 * 22 21 20 24 24 C 1.48075 * 119.99547 * 180.02562 * 22 21 20 25 25 C 1.39354 * 119.72154 * 179.97438 * 24 22 21 26 26 C 1.38588 * 119.05196 * 180.02562 * 25 24 22 27 27 C 1.38619 * 118.49319 * 359.97438 * 26 25 24 28 28 C 1.38588 * 119.35587 * 0.27462 * 27 26 25 29 29 N 1.31504 * 120.90553 * 359.43154 * 28 27 26 30 30 C 1.38122 * 119.96340 * 180.22811 * 2 1 3 31 31 H 1.09002 * 109.47048 * 90.00226 * 1 2 3 32 32 H 1.08997 * 109.46980 * 210.00024 * 1 2 3 33 33 H 1.08996 * 109.47074 * 330.00803 * 1 2 3 34 34 H 1.07994 * 119.92588 * 359.97438 * 3 2 1 35 35 H 1.09001 * 109.47197 * 269.98059 * 5 4 3 36 36 H 1.09008 * 109.47089 * 29.98033 * 5 4 3 37 37 H 1.09000 * 109.47043 * 149.97692 * 5 4 3 38 38 H 1.08000 * 120.03791 * 179.97438 * 6 4 3 39 39 H 1.08995 * 109.47410 * 30.00686 * 9 8 7 40 40 H 1.09007 * 109.47253 * 150.00445 * 9 8 7 41 41 H 0.96997 * 119.99596 * 179.97438 * 13 12 10 42 42 H 1.08998 * 109.46654 * 60.00000 * 20 18 8 43 43 H 1.09000 * 109.47094 * 300.00335 * 20 18 8 44 44 H 1.08000 * 120.47184 * 0.03662 * 25 24 22 45 45 H 1.08003 * 120.74802 * 180.02562 * 26 25 24 46 46 H 1.07996 * 120.32503 * 180.02562 * 27 26 25 47 47 H 1.08000 * 119.54425 * 179.72097 * 28 27 26 48 48 H 1.07994 * 120.03534 * 0.04506 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5806 1.2022 0.0005 5 6 4.3292 2.5101 -0.0001 6 6 4.2762 0.0092 0.0020 7 6 3.5855 -1.1957 0.0024 8 7 4.2874 -2.4062 0.0045 9 6 5.0696 -2.8014 -1.1695 10 6 4.1998 -3.5976 -2.1078 11 1 3.1677 -3.7904 -1.8548 12 6 4.7218 -4.0809 -3.2889 13 7 5.9788 -3.8465 -3.5968 14 14 3.6436 -5.0673 -4.4523 15 1 2.9794 -4.1479 -5.4109 16 1 4.4812 -6.0400 -5.1988 17 1 2.6127 -5.7980 -3.6722 18 6 4.2438 -3.2085 1.0865 19 8 3.6678 -2.8434 2.0895 20 6 4.9108 -4.5595 1.0502 21 8 4.7236 -5.2262 2.3264 22 6 5.2632 -6.4528 2.4604 23 8 5.8729 -6.9521 1.5366 24 6 5.1119 -7.1931 3.7339 25 6 5.6721 -8.4622 3.8661 26 6 5.5217 -9.1428 5.0639 27 6 4.8166 -8.5305 6.0884 28 6 4.2818 -7.2682 5.8852 29 7 4.4443 -6.6421 4.7402 30 6 2.1968 -1.1966 -0.0048 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5137 34 1 1.6560 2.1322 -0.0004 35 1 4.5105 2.8246 -1.0279 36 1 3.7370 3.2680 0.5128 37 1 5.2817 2.3837 0.5146 38 1 5.3562 0.0131 0.0020 39 1 5.4341 -1.9101 -1.6801 40 1 5.9163 -3.4109 -0.8536 41 1 6.3462 -4.1869 -4.4275 42 1 5.9764 -4.4335 0.8585 43 1 4.4678 -5.1622 0.2574 44 1 6.2159 -8.9088 3.0468 45 1 5.9449 -10.1276 5.1964 46 1 4.6818 -9.0339 7.0343 47 1 3.7281 -6.7902 6.6797 48 1 1.6568 -2.1318 -0.0092 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005692821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:38 Heat of formation + Delta-G solvation = -53.016669 kcal Electronic energy + Delta-G solvation = -32346.647800 eV Core-core repulsion = 27945.954059 eV Total energy + Delta-G solvation = -4400.693741 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.86240 -40.07141 -39.46153 -38.23077 -36.21848 -35.19875 -33.22190 -32.92959 -32.78627 -31.79773 -30.82841 -28.28399 -27.35696 -26.79883 -26.35985 -25.08016 -23.77903 -23.06924 -22.18554 -21.09691 -20.36150 -18.77408 -18.28273 -17.24738 -16.85419 -16.40850 -16.37633 -16.24189 -15.96696 -15.81450 -15.49014 -15.33086 -14.80917 -14.50452 -14.34852 -13.76953 -13.70929 -13.57367 -13.47809 -13.06893 -13.00940 -12.67041 -12.58214 -12.43643 -12.33273 -12.27237 -12.06238 -11.78048 -11.65026 -11.25222 -11.18522 -11.00396 -10.83398 -10.75537 -10.73722 -10.41180 -10.27944 -10.23642 -9.88180 -9.77161 -9.53083 -9.25973 -8.61668 -8.54390 -8.15415 -7.70130 -6.23747 -4.31970 0.30870 0.93555 1.72779 1.78977 2.40109 2.44609 3.12633 3.22164 3.29225 3.32737 3.60871 3.66198 4.07134 4.11890 4.30923 4.49148 4.65325 4.67455 4.71737 5.05086 5.07629 5.10297 5.12817 5.17203 5.41451 5.46357 5.49460 5.53160 5.56626 5.65237 5.73578 5.76036 5.76861 5.80303 5.83597 5.91635 6.02985 6.06009 6.23030 6.23931 6.46798 6.50108 6.64927 6.85481 6.91231 6.96722 7.08731 7.23023 7.44280 7.59774 7.71026 7.87330 7.94069 8.05427 8.68029 8.82889 9.36303 10.83343 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.007306 B = 0.002967 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3831.575413 B = 9435.172622 C =11918.045972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.079 4.079 3 C -0.132 4.132 4 C -0.080 4.080 5 C -0.108 4.108 6 C -0.126 4.126 7 C 0.184 3.816 8 N -0.557 5.557 9 C 0.235 3.765 10 C -0.544 4.544 11 H 0.063 0.937 12 C 0.069 3.931 13 N -0.887 5.887 14 Si 0.898 3.102 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.525 3.475 19 O -0.532 6.532 20 C 0.054 3.946 21 O -0.311 6.311 22 C 0.518 3.482 23 O -0.491 6.491 24 C 0.100 3.900 25 C -0.107 4.107 26 C -0.085 4.085 27 C -0.146 4.146 28 C 0.096 3.904 29 N -0.429 5.429 30 C -0.109 4.109 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.117 0.883 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.121 0.879 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.267 0.733 42 H 0.103 0.897 43 H 0.119 0.881 44 H 0.152 0.848 45 H 0.145 0.855 46 H 0.143 0.857 47 H 0.166 0.834 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.519 -1.993 14.546 14.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.080 4.080 3 C -0.150 4.150 4 C -0.080 4.080 5 C -0.165 4.165 6 C -0.146 4.146 7 C 0.093 3.907 8 N -0.287 5.287 9 C 0.117 3.883 10 C -0.582 4.582 11 H 0.081 0.919 12 C -0.135 4.135 13 N -0.525 5.525 14 Si 0.725 3.275 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.197 1.197 18 C 0.312 3.688 19 O -0.409 6.409 20 C -0.022 4.022 21 O -0.225 6.225 22 C 0.359 3.641 23 O -0.378 6.378 24 C -0.037 4.037 25 C -0.127 4.127 26 C -0.111 4.111 27 C -0.166 4.166 28 C -0.064 4.064 29 N -0.140 5.140 30 C -0.129 4.129 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.121 0.879 43 H 0.136 0.864 44 H 0.170 0.830 45 H 0.163 0.837 46 H 0.160 0.840 47 H 0.183 0.817 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.804 -1.139 14.459 14.773 hybrid contribution 0.029 -1.554 -0.993 1.844 sum -2.776 -2.692 13.466 14.011 Atomic orbital electron populations 1.20736 0.91403 1.02386 1.02068 1.19678 0.95762 0.92687 0.99841 1.20745 0.93351 0.97096 1.03840 1.19631 0.93683 0.94655 1.00073 1.20733 0.99746 0.93934 1.02111 1.21030 0.99869 0.91067 1.02637 1.17429 0.90424 0.85265 0.97586 1.45781 1.48915 1.17197 1.16773 1.19663 0.90654 0.96983 0.81006 1.21415 0.97894 1.34688 1.04250 0.91860 1.24916 0.95090 0.95870 0.97606 1.69911 1.12951 1.45065 1.24579 0.86486 0.80339 0.79860 0.80816 1.20398 1.20910 1.19666 1.19845 0.80770 0.85228 0.82933 1.90700 1.44108 1.74512 1.31564 1.22900 1.03067 0.92570 0.83682 1.86633 1.69531 1.28843 1.37497 1.20772 0.76286 0.80344 0.86660 1.90897 1.38686 1.68368 1.39869 1.20109 0.98967 0.92497 0.92117 1.22156 0.97819 0.93566 0.99179 1.21616 0.96923 1.00290 0.92229 1.22493 0.97214 0.96578 1.00283 1.22960 0.96956 0.92059 0.94431 1.67746 1.11230 1.35263 0.99779 1.21078 0.93250 0.97807 1.00745 0.91346 0.91686 0.91852 0.86520 0.91313 0.91865 0.91740 0.86054 0.93789 0.94021 0.92336 0.87881 0.86362 0.82987 0.83689 0.83967 0.81702 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 36.00 0.36 -1.05 16 2 C -0.08 -1.31 5.88 -104.65 -0.62 -1.92 16 3 C -0.13 -2.02 9.35 -39.55 -0.37 -2.39 16 4 C -0.08 -1.27 5.88 -104.65 -0.62 -1.88 16 5 C -0.11 -1.31 10.01 36.01 0.36 -0.95 16 6 C -0.13 -2.35 9.34 -39.39 -0.37 -2.72 16 7 C 0.18 3.84 4.74 -83.69 -0.40 3.45 16 8 N -0.56 -12.30 2.50 -114.74 -0.29 -12.59 16 9 C 0.24 5.62 4.88 -5.20 -0.03 5.59 16 10 C -0.54 -14.16 9.16 -34.44 -0.32 -14.48 16 11 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 12 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 13 N -0.89 -24.42 13.29 55.43 0.74 -23.68 16 14 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.52 11.62 7.61 -10.98 -0.08 11.54 16 19 O -0.53 -12.87 16.27 -14.10 -0.23 -13.10 16 20 C 0.05 1.10 4.62 36.01 0.17 1.27 16 21 O -0.31 -6.21 9.57 -47.11 -0.45 -6.66 16 22 C 0.52 9.24 7.95 34.77 0.28 9.51 16 23 O -0.49 -9.39 16.11 -19.20 -0.31 -9.70 16 24 C 0.10 1.46 6.75 -83.02 -0.56 0.90 16 25 C -0.11 -1.18 9.63 -39.04 -0.38 -1.56 16 26 C -0.08 -0.65 10.17 -39.31 -0.40 -1.05 16 27 C -0.15 -1.05 10.12 -39.31 -0.40 -1.45 16 28 C 0.10 0.94 11.18 -17.56 -0.20 0.75 16 29 N -0.43 -6.20 10.12 -9.81 -0.10 -6.30 16 30 C -0.11 -2.15 9.22 -39.39 -0.36 -2.52 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.65 8.09 -51.92 -0.42 0.23 16 37 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 38 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.04 1.11 7.86 -51.93 -0.41 0.70 16 40 H 0.04 1.01 6.47 -51.93 -0.34 0.67 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.10 1.99 7.25 -51.93 -0.38 1.61 16 43 H 0.12 2.48 7.91 -51.93 -0.41 2.06 16 44 H 0.15 1.54 7.64 -52.49 -0.40 1.14 16 45 H 0.15 0.64 8.06 -52.48 -0.42 0.22 16 46 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 47 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 48 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 420.88 15.07 6.34 6.34 Total: -1.00 -33.42 420.88 -9.87 -43.30 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.54 Total: 3.86 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -4.02 Total: 2.78 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.35 Total: -42.58 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.99 Total: -29.46 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -33.42 -9.87 -43.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005692821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.720 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds