Wall clock time and date at job start Tue Mar 31 2020 05:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35719 * 117.00343 * 2 1 4 4 C 1.38989 * 119.91039 * 180.02562 * 3 2 1 5 5 C 1.37705 * 120.08891 * 180.02562 * 4 3 2 6 6 C 1.39754 * 119.90749 * 0.02562 * 5 4 3 7 7 C 1.47560 * 120.08871 * 179.97438 * 6 5 4 8 8 O 1.21635 * 119.99978 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00184 * 179.97438 * 7 6 5 10 10 N 1.40100 * 120.00598 * 180.02562 * 9 7 6 11 11 C 1.29817 * 120.00264 * 180.02562 * 10 9 7 12 12 C 1.47390 * 119.99779 * 179.97438 * 11 10 9 13 13 C 1.39775 * 120.07816 * 179.97438 * 12 11 10 14 14 C 1.37745 * 119.91432 * 179.97438 * 13 12 11 15 15 C 1.39086 * 120.08327 * 359.97438 * 14 13 12 16 16 N 1.39470 * 119.92161 * 179.97438 * 15 14 13 17 17 C 1.46504 * 119.99628 * 0.02562 * 16 15 14 18 18 C 1.46502 * 120.00699 * 180.02562 * 16 15 14 19 19 C 1.50694 * 109.47209 * 89.99579 * 18 16 15 20 20 H 1.08006 * 120.00032 * 0.02562 * 19 18 16 21 21 C 1.37872 * 119.99875 * 179.97438 * 19 18 16 22 22 N 1.31514 * 119.99949 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00317 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47140 * 89.99612 * 23 21 19 25 25 H 1.48501 * 109.47128 * 209.99739 * 23 21 19 26 26 H 1.48503 * 109.46774 * 329.99938 * 23 21 19 27 27 C 1.39093 * 120.16123 * 0.02562 * 15 14 13 28 28 C 1.37736 * 120.08812 * 359.97438 * 27 15 14 29 29 C 1.39749 * 119.82181 * 0.26859 * 6 5 4 30 30 C 1.37700 * 119.90482 * 359.45008 * 29 6 5 31 31 H 1.09003 * 109.47358 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46833 * 299.99704 * 1 2 3 33 33 H 1.08997 * 109.47462 * 60.00234 * 1 2 3 34 34 H 1.07997 * 119.95702 * 0.02562 * 4 3 2 35 35 H 1.08006 * 120.04543 * 179.97438 * 5 4 3 36 36 H 0.97008 * 119.99598 * 0.02562 * 9 7 6 37 37 H 1.08000 * 120.00176 * 359.97438 * 11 10 9 38 38 H 1.08003 * 120.04477 * 0.25941 * 13 12 11 39 39 H 1.08004 * 119.95635 * 180.02562 * 14 13 12 40 40 H 1.09003 * 109.47426 * 90.00151 * 17 16 15 41 41 H 1.09000 * 109.47109 * 209.99836 * 17 16 15 42 42 H 1.09001 * 109.47318 * 329.99899 * 17 16 15 43 43 H 1.08997 * 109.46886 * 210.00687 * 18 16 15 44 44 H 1.08999 * 109.46349 * 329.99985 * 18 16 15 45 45 H 0.97004 * 120.00148 * 180.02562 * 22 21 19 46 46 H 1.08008 * 119.95451 * 179.97438 * 27 15 14 47 47 H 1.07998 * 120.04437 * 179.97438 * 28 27 15 48 48 H 1.08004 * 120.04746 * 179.70631 * 29 6 5 49 49 H 1.08009 * 119.95435 * 180.27310 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 3.4333 1.2797 -0.0005 5 6 4.0623 2.5047 0.0000 6 6 3.3030 3.6780 0.0016 7 6 3.9729 4.9927 0.0028 8 8 5.1876 5.0564 0.0028 9 7 3.2390 6.1230 0.0038 10 7 3.8749 7.3714 0.0043 11 6 3.1679 8.4601 0.0059 12 6 3.8371 9.7733 0.0070 13 6 3.0774 10.9466 0.0081 14 6 3.7063 12.1722 0.0097 15 6 5.0954 12.2430 0.0108 16 7 5.7286 13.4856 0.0118 17 6 4.9307 14.7143 0.0124 18 6 7.1916 13.5624 0.0124 19 6 7.6938 13.5896 -1.4081 20 1 6.9932 13.5537 -2.2294 21 6 9.0475 13.6613 -1.6595 22 7 9.4857 13.6855 -2.8992 23 14 10.2592 13.7240 -0.2392 24 1 10.6541 12.3425 0.1360 25 1 11.4640 14.4889 -0.6498 26 1 9.6228 14.3904 0.9253 27 6 5.8545 11.0775 0.0097 28 6 5.2328 9.8484 0.0081 29 6 1.9076 3.6027 0.0084 30 6 1.2863 2.3738 0.0020 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 4.0193 0.3726 -0.0014 35 1 5.1410 2.5586 0.0000 36 1 2.2702 6.0722 0.0042 37 1 2.0894 8.4036 0.0063 38 1 1.9987 10.8925 0.0123 39 1 3.1200 13.0792 0.0109 40 1 4.7324 15.0184 1.0402 41 1 5.4794 15.5041 -0.5007 42 1 3.9866 14.5347 -0.5019 43 1 7.5076 14.4697 0.5271 44 1 7.6008 12.6922 0.5258 45 1 10.4382 13.7356 -3.0761 46 1 6.9330 11.1363 0.0101 47 1 5.8229 8.9439 0.0068 48 1 1.3172 4.5070 0.0144 49 1 0.2078 2.3147 0.0027 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006419313.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:58 Heat of formation + Delta-G solvation = 42.350909 kcal Electronic energy + Delta-G solvation = -30165.400898 eV Core-core repulsion = 25866.561267 eV Total energy + Delta-G solvation = -4298.839631 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.84628 -39.65292 -39.10371 -37.53889 -36.70617 -35.52562 -32.93247 -32.47930 -31.50218 -30.73149 -30.70140 -29.13379 -28.30218 -27.83651 -25.56270 -24.08621 -23.32053 -22.70407 -22.02369 -21.15177 -20.67982 -19.70200 -18.88230 -17.98506 -17.21560 -16.97247 -16.73238 -16.45493 -16.33887 -15.50370 -15.16974 -15.11839 -14.89431 -14.63049 -14.32366 -14.20863 -13.97295 -13.86406 -13.63777 -13.23378 -13.14813 -13.10570 -12.95297 -12.72272 -12.44317 -12.40422 -11.87041 -11.69898 -11.58829 -11.55567 -11.42236 -11.37886 -11.02218 -10.65145 -10.37175 -10.31829 -10.14369 -9.94625 -9.73948 -9.60153 -9.44911 -8.80607 -8.67470 -8.50374 -8.43143 -6.47968 -6.15930 -4.16979 0.43244 0.81581 1.29907 2.00435 2.40685 2.50292 2.66406 2.93115 3.22862 3.29507 3.31317 3.51756 3.91837 4.11655 4.27096 4.31667 4.34446 4.46580 4.49004 4.57383 4.70384 4.74571 4.85138 4.91664 5.01637 5.11668 5.14422 5.34816 5.41491 5.42515 5.57839 5.64502 5.70335 5.76331 5.88075 5.90840 5.93442 6.09804 6.14022 6.18712 6.27772 6.44021 6.66943 6.68065 6.76147 6.87814 6.95664 6.98434 7.10646 7.37151 7.49760 7.55675 7.91942 8.19757 8.37328 8.45771 8.90517 9.43194 10.96934 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.015817 B = 0.001480 C = 0.001380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.819357 B =18919.691440 C =20288.959076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.153 3.847 4 C -0.158 4.158 5 C -0.015 4.015 6 C -0.167 4.167 7 C 0.577 3.423 8 O -0.503 6.503 9 N -0.584 5.584 10 N -0.256 5.256 11 C 0.144 3.856 12 C -0.155 4.155 13 C -0.036 4.036 14 C -0.225 4.225 15 C 0.260 3.740 16 N -0.601 5.601 17 C 0.094 3.906 18 C 0.217 3.783 19 C -0.539 4.539 20 H 0.077 0.923 21 C 0.075 3.925 22 N -0.892 5.892 23 Si 0.871 3.129 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.265 1.265 27 C -0.196 4.196 28 C -0.023 4.023 29 C -0.045 4.045 30 C -0.217 4.217 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.377 0.623 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.040 0.960 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.030 0.970 44 H 0.030 0.970 45 H 0.266 0.734 46 H 0.134 0.866 47 H 0.127 0.873 48 H 0.128 0.872 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.038 -21.042 8.149 32.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.107 3.893 4 C -0.177 4.177 5 C -0.034 4.034 6 C -0.172 4.172 7 C 0.365 3.635 8 O -0.376 6.376 9 N -0.326 5.326 10 N -0.060 5.060 11 C -0.065 4.065 12 C -0.160 4.160 13 C -0.058 4.058 14 C -0.248 4.248 15 C 0.151 3.849 16 N -0.305 5.305 17 C -0.049 4.049 18 C 0.096 3.904 19 C -0.577 4.577 20 H 0.095 0.905 21 C -0.129 4.129 22 N -0.530 5.530 23 Si 0.698 3.302 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.190 1.190 27 C -0.219 4.219 28 C -0.044 4.044 29 C -0.064 4.064 30 C -0.235 4.235 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.216 0.784 37 H 0.126 0.874 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.151 0.849 47 H 0.145 0.855 48 H 0.146 0.854 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.927 -21.503 8.035 31.063 hybrid contribution -1.029 0.429 0.440 1.199 sum -21.956 -21.074 8.474 31.591 Atomic orbital electron populations 1.23145 0.77860 1.04386 1.01679 1.86064 1.21862 1.26815 1.87827 1.19331 0.92474 0.84251 0.93271 1.20447 0.91246 0.98827 1.07148 1.21126 1.01036 0.89686 0.91564 1.19746 0.93566 0.93093 1.10819 1.17861 0.86907 0.82228 0.76496 1.90827 1.13168 1.86771 1.46825 1.46807 1.08096 1.03482 1.74195 1.75122 1.24804 0.89857 1.16212 1.24442 0.96564 0.91373 0.94124 1.17861 0.93223 0.89163 1.15785 1.20714 0.98324 0.90989 0.95741 1.20463 0.92573 0.97713 1.14057 1.18130 0.91337 0.86205 0.89272 1.46849 1.06942 1.02008 1.74655 1.21576 0.95848 0.87499 1.00027 1.19747 0.75421 0.97144 0.98089 1.21428 0.92946 1.51896 0.91433 0.90469 1.24885 0.98127 0.94352 0.95494 1.69894 1.14754 1.49651 1.18695 0.86924 0.81345 0.78960 0.82969 1.19737 1.20909 1.19021 1.20842 1.00796 0.90651 1.09563 1.21099 0.93219 0.97359 0.92728 1.21080 0.93197 0.97548 0.94591 1.21160 1.00409 0.91935 1.10018 0.87909 0.92306 0.92277 0.84161 0.83482 0.78444 0.87411 0.86519 0.86130 0.94146 0.90986 0.92099 0.95187 0.95186 0.92418 0.84871 0.85472 0.85437 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.31 -2.20 10.48 -18.86 -0.20 -2.40 16 3 C 0.15 1.18 6.70 -39.02 -0.26 0.91 16 4 C -0.16 -1.28 9.97 -39.50 -0.39 -1.68 16 5 C -0.02 -0.15 9.59 -39.21 -0.38 -0.52 16 6 C -0.17 -1.71 5.87 -104.96 -0.62 -2.33 16 7 C 0.58 7.96 7.88 -12.46 -0.10 7.86 16 8 O -0.50 -9.17 16.68 5.25 0.09 -9.08 16 9 N -0.58 -7.18 6.21 30.47 0.19 -6.99 16 10 N -0.26 -3.89 10.15 32.15 0.33 -3.56 16 11 C 0.14 1.84 10.75 -14.68 -0.16 1.68 16 12 C -0.15 -2.34 5.87 -105.02 -0.62 -2.95 16 13 C -0.04 -0.49 9.78 -39.19 -0.38 -0.88 16 14 C -0.22 -3.48 9.18 -39.45 -0.36 -3.84 16 15 C 0.26 4.91 6.56 -83.75 -0.55 4.37 16 16 N -0.60 -11.94 2.99 -180.95 -0.54 -12.48 16 17 C 0.09 1.49 10.18 59.85 0.61 2.10 16 18 C 0.22 4.97 3.97 -5.20 -0.02 4.94 16 19 C -0.54 -14.74 9.94 -34.44 -0.34 -15.08 16 20 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 21 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 22 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 23 Si 0.87 20.66 27.47 -169.99 -4.67 15.99 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 27 C -0.20 -3.85 9.19 -39.45 -0.36 -4.21 16 28 C -0.02 -0.41 9.57 -39.19 -0.37 -0.78 16 29 C -0.05 -0.33 9.53 -39.21 -0.37 -0.70 16 30 C -0.22 -1.40 9.01 -39.50 -0.36 -1.75 16 31 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.06 0.13 7.65 -51.93 -0.40 -0.26 16 33 H 0.06 0.14 7.65 -51.93 -0.40 -0.26 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.15 1.41 7.64 -52.48 -0.40 1.01 16 36 H 0.38 3.03 6.67 -182.59 -1.22 1.82 16 37 H 0.11 0.93 8.02 -52.49 -0.42 0.51 16 38 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 39 H 0.12 1.61 6.12 -52.48 -0.32 1.28 16 40 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 42 H 0.06 0.84 6.18 -51.93 -0.32 0.52 16 43 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 44 H 0.03 0.69 5.61 -51.93 -0.29 0.40 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.13 2.84 6.12 -52.48 -0.32 2.51 16 47 H 0.13 2.32 7.55 -52.49 -0.40 1.92 16 48 H 0.13 0.58 6.39 -52.48 -0.34 0.25 16 49 H 0.14 0.52 6.28 -52.48 -0.33 0.19 16 LS Contribution 413.35 15.07 6.23 6.23 Total: -1.00 -35.72 413.35 -9.16 -44.89 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.22 Total: 3.25 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -4.14 Total: -9.79 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.75 Total: -49.09 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -0.11 Total: -11.48 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.72 -9.16 -44.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006419313.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.240 kcal (2) G-P(sol) polarization free energy of solvation -35.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds