Wall clock time and date at job start Tue Mar 31 2020 07:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.51194 * 2 1 4 4 C 1.53296 * 109.51288 * 239.90380 * 2 1 3 5 5 N 1.47150 * 108.38596 * 187.72460 * 4 2 1 6 6 S 1.65595 * 120.97975 * 230.50877 * 5 4 2 7 7 O 1.42093 * 106.40572 * 336.45799 * 6 5 4 8 8 O 1.42104 * 106.40169 * 203.53615 * 6 5 4 9 9 C 1.76198 * 107.22040 * 90.00065 * 6 5 4 10 10 C 1.38404 * 119.92688 * 89.99739 * 9 6 5 11 11 C 1.38351 * 120.30833 * 180.23957 * 10 9 6 12 12 C 1.37950 * 120.15594 * 359.48402 * 11 10 9 13 13 C 1.39643 * 119.84362 * 0.50887 * 12 11 10 14 14 C 1.47665 * 120.15416 * 179.72226 * 13 12 11 15 15 O 1.21508 * 120.00136 * 180.02562 * 14 13 12 16 16 O 1.34732 * 119.99826 * 0.02721 * 14 13 12 17 17 C 1.34853 * 116.99945 * 179.97438 * 16 14 13 18 18 H 1.08002 * 120.00215 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99931 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00481 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00074 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47097 * 60.00236 * 21 19 17 23 23 H 1.48496 * 109.47489 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47013 * 300.00618 * 21 19 17 25 25 C 1.37916 * 119.92238 * 269.98014 * 9 6 5 26 26 C 1.47154 * 118.03875 * 50.77947 * 5 4 2 27 27 C 1.53715 * 108.16067 * 309.16601 * 26 5 4 28 28 H 1.08995 * 109.44295 * 172.37232 * 27 26 5 29 29 C 1.53000 * 109.65376 * 292.56719 * 27 26 5 30 30 O 1.42956 * 109.55607 * 120.12724 * 2 1 3 31 31 H 1.08997 * 109.47602 * 180.09943 * 1 2 3 32 32 H 1.09002 * 109.47283 * 300.10368 * 1 2 3 33 33 H 1.09000 * 109.47163 * 60.09647 * 1 2 3 34 34 H 1.08999 * 109.68176 * 67.99456 * 4 2 1 35 35 H 1.09002 * 109.70934 * 307.46048 * 4 2 1 36 36 H 1.08002 * 119.84007 * 359.95433 * 10 9 6 37 37 H 1.08005 * 119.92172 * 179.74921 * 11 10 9 38 38 H 1.08006 * 120.07541 * 180.26053 * 12 11 10 39 39 H 0.96991 * 120.00573 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.07502 * 359.97438 * 25 9 6 41 41 H 1.08998 * 109.67846 * 68.93858 * 26 5 4 42 42 H 1.08993 * 109.68261 * 189.49220 * 26 5 4 43 43 H 1.08997 * 109.47504 * 179.74435 * 29 27 26 44 44 H 1.09003 * 109.47420 * 299.74750 * 29 27 26 45 45 H 1.09001 * 109.47284 * 59.73922 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2501 5 7 3.5013 -0.8746 -1.1346 6 16 4.5056 -0.4166 -2.3691 7 8 3.7241 -0.4492 -3.5553 8 8 5.7050 -1.1613 -2.2078 9 6 4.9285 1.2723 -2.0981 10 6 6.0449 1.5924 -1.3453 11 6 6.3815 2.9158 -1.1235 12 6 5.6113 3.9262 -1.6610 13 6 4.4836 3.6107 -2.4217 14 6 3.6508 4.6868 -2.9952 15 8 2.6698 4.4091 -3.6562 16 8 3.9787 5.9767 -2.7854 17 6 3.1767 6.9098 -3.3373 18 1 2.3164 6.6083 -3.9165 19 6 3.4563 8.2579 -3.1602 20 7 4.5027 8.6249 -2.4551 21 14 2.3450 9.5505 -3.9242 22 1 0.9676 9.3968 -3.3910 23 1 2.8572 10.9037 -3.5903 24 1 2.3268 9.3786 -5.3991 25 6 4.1465 2.2723 -2.6371 26 6 4.0414 -1.4492 0.1078 27 6 3.4323 -0.6843 1.2938 28 1 3.7108 -1.1774 2.2251 29 6 3.9530 0.7543 1.3005 30 8 2.0085 -0.6761 1.1651 31 1 -0.3634 -1.0276 0.0018 32 1 -0.3634 0.5154 0.8891 33 1 -0.3633 0.5123 -0.8908 34 1 1.8022 -0.1392 -2.1378 35 1 1.5765 -1.7076 -1.3218 36 1 6.6535 0.8052 -0.9252 37 1 7.2517 3.1585 -0.5316 38 1 5.8776 4.9590 -1.4905 39 1 4.6979 9.5669 -2.3310 40 1 3.2760 2.0212 -3.2250 41 1 3.7737 -2.5039 0.1711 42 1 5.1262 -1.3439 0.1197 43 1 3.5158 1.2952 2.1397 44 1 5.0386 0.7474 1.3985 45 1 3.6757 1.2454 0.3677 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006784413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:33 Heat of formation + Delta-G solvation = -162.161589 kcal Electronic energy + Delta-G solvation = -32670.261869 eV Core-core repulsion = 28166.727444 eV Total energy + Delta-G solvation = -4503.534425 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 369.117 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -40.03633 -39.67216 -38.29788 -37.44920 -35.99910 -35.30164 -35.10798 -33.71479 -32.39198 -31.41985 -31.06400 -30.29173 -27.43392 -25.86878 -25.45650 -23.77224 -23.09577 -23.00324 -20.74480 -20.13325 -19.13845 -18.34052 -17.87746 -17.74021 -16.98713 -16.33713 -16.23283 -16.02535 -15.60640 -15.31052 -14.99204 -14.83698 -14.70169 -14.57901 -14.54201 -14.23771 -13.89745 -13.39117 -12.87950 -12.78401 -12.71247 -12.60481 -12.52006 -12.31305 -12.25477 -12.22968 -12.15479 -11.91169 -11.82951 -11.78714 -11.47229 -11.41154 -11.33943 -10.99594 -10.60158 -10.56625 -10.51127 -10.37141 -10.00886 -9.37715 -9.26536 -9.04896 -8.96622 -8.73489 -6.60592 -4.22872 0.16302 0.74943 1.09662 2.63599 3.00752 3.09704 3.13614 3.20294 3.43913 3.56807 3.75289 4.03961 4.04520 4.32425 4.35208 4.45649 4.67585 4.75844 4.79023 4.85164 4.89642 4.98501 5.00496 5.02831 5.07286 5.28681 5.29953 5.36051 5.40366 5.46150 5.48442 5.52578 5.60816 5.72252 5.79834 5.83032 5.89235 5.96374 6.02052 6.17888 6.24023 6.39921 6.65049 6.84754 6.94726 7.22817 7.76546 8.52908 8.87951 9.64324 10.56570 Molecular weight = 369.12amu Principal moments of inertia in cm(-1) A = 0.012642 B = 0.002934 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.285782 B = 9540.945164 C =10154.715187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.068 3.932 3 H 0.072 0.928 4 C 0.092 3.908 5 N -1.000 6.000 6 S 2.694 3.306 7 O -0.949 6.949 8 O -0.955 6.955 9 C -0.691 4.691 10 C -0.013 4.013 11 C -0.147 4.147 12 C -0.018 4.018 13 C -0.101 4.101 14 C 0.426 3.574 15 O -0.549 6.549 16 O -0.202 6.202 17 C -0.375 4.375 18 H 0.099 0.901 19 C 0.043 3.957 20 N -0.857 5.857 21 Si 0.947 3.053 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.268 1.268 25 C 0.026 3.974 26 C 0.093 3.907 27 C 0.076 3.924 28 H 0.113 0.887 29 C -0.192 4.192 30 O -0.369 6.369 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.150 0.850 39 H 0.273 0.727 40 H 0.149 0.851 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.294 -17.897 9.632 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 H 0.090 0.910 4 C -0.033 4.033 5 N -0.838 5.838 6 S 2.786 3.214 7 O -0.940 6.940 8 O -0.946 6.946 9 C -0.778 4.778 10 C -0.033 4.033 11 C -0.166 4.166 12 C -0.037 4.037 13 C -0.103 4.103 14 C 0.274 3.726 15 O -0.448 6.448 16 O -0.109 6.109 17 C -0.450 4.450 18 H 0.117 0.883 19 C -0.162 4.162 20 N -0.492 5.492 21 Si 0.771 3.229 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.193 1.193 25 C 0.006 3.994 26 C -0.032 4.032 27 C 0.017 3.983 28 H 0.131 0.869 29 C -0.250 4.250 30 O -0.288 6.288 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.168 0.832 39 H 0.083 0.917 40 H 0.166 0.834 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.321 -18.345 8.970 20.423 hybrid contribution -0.160 1.606 -0.175 1.624 sum 0.161 -16.738 8.795 18.909 Atomic orbital electron populations 1.21748 0.92131 1.03126 1.03278 1.22503 0.95538 0.96118 0.84971 0.91029 1.22226 0.78718 1.02661 0.99718 1.57866 1.16701 1.76897 1.32305 1.01968 0.72929 0.73733 0.72763 1.93600 1.70282 1.86845 1.43236 1.93564 1.45715 1.69382 1.85892 1.30762 1.07738 1.24112 1.15236 1.20940 0.92670 0.97569 0.92116 1.21251 1.01016 0.92293 1.02033 1.22006 0.90826 1.01217 0.89634 1.19534 0.97046 0.92454 1.01302 1.20587 0.85212 0.83971 0.82804 1.90650 1.28858 1.83986 1.41281 1.83864 1.50527 1.13041 1.63445 1.21315 1.08131 0.84059 1.31528 0.88298 1.25410 0.97222 0.97078 0.96536 1.69947 1.25318 1.17871 1.36107 0.85675 0.79370 0.78278 0.79537 1.19268 1.20206 1.19256 1.20923 0.96336 0.90656 0.91477 1.22257 0.99387 0.98337 0.83260 1.22620 0.81532 0.96049 0.98106 0.86912 1.22505 1.02037 0.96812 1.03625 1.87998 1.20316 1.77187 1.43263 0.91602 0.91361 0.90409 0.88027 0.89814 0.84484 0.84585 0.83209 0.91665 0.83362 0.89869 0.88269 0.91290 0.91168 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.57 37.16 0.36 -0.86 16 2 C 0.07 0.67 3.01 -26.58 -0.08 0.59 16 3 H 0.07 0.78 6.25 -51.93 -0.32 0.45 16 4 C 0.09 0.91 5.85 -3.53 -0.02 0.89 16 5 N -1.00 -10.36 2.85 -112.82 -0.32 -10.68 16 6 S 2.69 35.31 5.70 -107.50 -0.61 34.69 16 7 O -0.95 -15.18 16.07 -57.17 -0.92 -16.10 16 8 O -0.96 -13.52 16.06 -57.17 -0.92 -14.44 16 9 C -0.69 -9.66 5.38 -39.64 -0.21 -9.87 16 10 C -0.01 -0.16 9.52 -39.48 -0.38 -0.54 16 11 C -0.15 -1.87 10.03 -39.65 -0.40 -2.27 16 12 C -0.02 -0.30 9.62 -39.16 -0.38 -0.68 16 13 C -0.10 -1.96 5.87 -104.98 -0.62 -2.58 16 14 C 0.43 10.52 7.84 34.58 0.27 10.79 16 15 O -0.55 -14.66 15.59 -19.27 -0.30 -14.96 16 16 O -0.20 -5.57 8.99 -21.64 -0.19 -5.77 16 17 C -0.37 -10.69 9.65 30.95 0.30 -10.39 16 18 H 0.10 2.84 6.86 -52.49 -0.36 2.48 16 19 C 0.04 1.16 5.50 -17.52 -0.10 1.06 16 20 N -0.86 -23.82 13.67 55.49 0.76 -23.06 16 21 Si 0.95 20.46 29.55 -169.99 -5.02 15.43 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 C 0.03 0.44 9.07 -39.16 -0.36 0.08 16 26 C 0.09 0.77 5.99 -3.31 -0.02 0.75 16 27 C 0.08 0.62 3.93 -26.36 -0.10 0.52 16 28 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 29 C -0.19 -1.70 8.82 37.16 0.33 -1.37 16 30 O -0.37 -3.72 10.23 -35.23 -0.36 -4.08 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.03 7.25 -51.93 -0.38 0.65 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.14 1.30 7.61 -52.49 -0.40 0.90 16 37 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.15 2.59 7.61 -52.48 -0.40 2.19 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.15 2.57 7.20 -52.49 -0.38 2.19 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.71 7.24 -51.93 -0.38 0.33 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.71 5.52 -51.93 -0.29 0.42 16 LS Contribution 386.71 15.07 5.83 5.83 Total: -1.00 -35.03 386.71 -9.31 -44.34 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.84 Total: 2.68 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -1.40 Total: -13.89 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.44 Total: -33.74 kcal Atomic # 8 Polarization: -52.65 SS G_CDS: -2.69 Total: -55.34 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 35.31 SS G_CDS: -0.61 Total: 34.69 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.03 -9.31 -44.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006784413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.823 kcal (2) G-P(sol) polarization free energy of solvation -35.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds