Wall clock time and date at job start Tue Mar 31 2020 05:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31532 * 1 3 3 Si 1.86801 * 120.00318 * 2 1 4 4 H 1.48499 * 109.46926 * 269.99923 * 3 2 1 5 5 H 1.48502 * 109.47088 * 29.99740 * 3 2 1 6 6 H 1.48496 * 109.47161 * 149.99708 * 3 2 1 7 7 C 1.38679 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00468 * 180.02562 * 7 2 1 9 9 O 1.34781 * 119.99774 * 0.02562 * 7 2 1 10 10 C 1.35536 * 117.00017 * 174.93054 * 9 7 2 11 11 C 1.38738 * 120.16944 * 5.67433 * 10 9 7 12 12 C 1.38073 * 120.11752 * 180.27847 * 11 10 9 13 13 C 1.38711 * 120.45341 * 359.72153 * 12 11 10 14 14 Br 1.89105 * 119.82937 * 179.97438 * 13 12 11 15 15 C 1.37837 * 120.33658 * 359.97438 * 13 12 11 16 16 C 1.39968 * 119.87821 * 0.02562 * 15 13 12 17 17 C 1.46728 * 120.22828 * 180.02562 * 16 15 13 18 18 C 1.35778 * 119.99714 * 334.93395 * 17 16 15 19 19 S 1.77397 * 127.72118 * 353.31502 * 18 17 16 20 20 C 1.77198 * 94.77068 * 180.02562 * 19 18 17 21 21 N 1.30443 * 126.65627 * 179.91656 * 20 19 18 22 22 N 1.37010 * 106.68895 * 359.64990 * 20 19 18 23 23 C 1.32239 * 118.66945 * 0.26502 * 22 20 19 24 24 O 1.21703 * 122.34858 * 180.02562 * 23 22 20 25 25 H 0.97003 * 119.99843 * 0.02562 * 1 2 3 26 26 H 1.08007 * 119.94147 * 359.97438 * 11 10 9 27 27 H 1.07995 * 119.77315 * 179.70029 * 12 11 10 28 28 H 1.08006 * 120.06076 * 180.02562 * 15 13 12 29 29 H 1.07992 * 120.00154 * 154.93645 * 17 16 15 30 30 H 0.97002 * 120.00337 * 359.68217 * 21 20 19 31 31 H 0.97003 * 120.66320 * 180.24326 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5469 1.4401 0.7001 7 6 2.0087 -1.2010 0.0005 8 1 3.0886 -1.2011 0.0010 9 8 1.3348 -2.3682 0.0005 10 6 2.0689 -3.5026 -0.1056 11 6 3.4547 -3.4403 -0.0898 12 6 4.2016 -4.5960 -0.2038 13 6 3.5761 -5.8277 -0.3291 14 35 4.6162 -7.3994 -0.4848 15 6 2.2004 -5.9120 -0.3408 16 6 1.4296 -4.7492 -0.2261 17 6 -0.0354 -4.8301 -0.2371 18 6 -0.6531 -5.8762 -0.8435 19 16 0.0904 -7.1602 -1.8159 20 6 -1.4359 -7.9978 -2.1456 21 7 -1.5915 -9.0839 -2.8512 22 7 -2.4200 -7.2868 -1.5108 23 6 -2.0830 -6.2015 -0.8346 24 8 -2.9020 -5.5206 -0.2457 25 1 -0.4850 0.8401 -0.0004 26 1 3.9504 -2.4856 0.0070 27 1 5.2801 -4.5406 -0.1956 28 1 1.7180 -6.8734 -0.4382 29 1 -0.6224 -4.0575 0.2371 30 1 -0.8227 -9.5107 -3.2606 31 1 -3.3455 -7.5736 -1.5566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006828690.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:31 Heat of formation + Delta-G solvation = 14.804526 kcal Electronic energy + Delta-G solvation = -21415.188987 eV Core-core repulsion = 17835.829246 eV Total energy + Delta-G solvation = -3579.359742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 367.962 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.55721 -39.64864 -37.15614 -36.74564 -34.07597 -33.06661 -32.77987 -31.16174 -29.64577 -28.22636 -25.80561 -24.99160 -23.72476 -22.40605 -21.22610 -19.16391 -18.63721 -18.44545 -17.41110 -17.16924 -16.10246 -15.79753 -15.39919 -15.24723 -14.81069 -14.48902 -14.22973 -14.22558 -13.67893 -13.17868 -12.79292 -12.73647 -12.38277 -12.12016 -11.59818 -11.33259 -11.31279 -11.20799 -10.94696 -10.71826 -10.20949 -10.10038 -10.04355 -9.85767 -9.57847 -9.53265 -9.19126 -8.77213 -7.91848 -7.28967 -6.91741 -4.46565 0.50592 1.12213 1.57788 1.73462 1.90362 2.06399 2.27261 2.70347 2.90236 2.91231 2.97282 3.13212 3.60452 4.03195 4.14428 4.59017 4.72728 5.09905 5.26053 5.29442 5.44990 5.60633 5.95652 5.98153 6.07928 6.26840 6.29886 6.49654 6.60305 6.62010 6.77010 6.88495 7.16190 7.49925 7.59008 7.79131 8.50202 9.08510 10.22402 Molecular weight = 367.96amu Principal moments of inertia in cm(-1) A = 0.007523 B = 0.004531 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3720.935167 B = 6178.241874 C = 9632.807094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.046 3.954 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.394 4.394 8 H 0.103 0.897 9 O -0.140 6.140 10 C 0.185 3.815 11 C -0.223 4.223 12 C -0.020 4.020 13 C -0.183 4.183 14 Br -0.077 7.077 15 C -0.007 4.007 16 C -0.185 4.185 17 C 0.127 3.873 18 C -0.281 4.281 19 S -0.031 6.031 20 C 0.399 3.601 21 N -0.688 5.688 22 N -0.648 5.648 23 C 0.571 3.429 24 O -0.496 6.496 25 H 0.280 0.720 26 H 0.143 0.857 27 H 0.124 0.876 28 H 0.140 0.860 29 H 0.159 0.841 30 H 0.366 0.634 31 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 -10.852 -1.815 12.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.163 4.163 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.187 1.187 7 C -0.468 4.468 8 H 0.120 0.880 9 O -0.038 6.038 10 C 0.124 3.876 11 C -0.243 4.243 12 C -0.040 4.040 13 C -0.263 4.263 14 Br 0.007 6.993 15 C -0.029 4.029 16 C -0.188 4.188 17 C 0.100 3.900 18 C -0.397 4.397 19 S 0.202 5.798 20 C 0.008 3.992 21 N -0.325 5.325 22 N -0.300 5.300 23 C 0.359 3.641 24 O -0.370 6.370 25 H 0.091 0.909 26 H 0.160 0.840 27 H 0.142 0.858 28 H 0.157 0.843 29 H 0.177 0.823 30 H 0.187 0.813 31 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 6.277 -11.569 -2.123 13.332 hybrid contribution -0.468 1.381 0.272 1.483 sum 5.809 -10.188 -1.851 11.873 Atomic orbital electron populations 1.70010 1.06243 1.29127 1.40902 1.25497 0.95995 0.99444 0.95398 0.85577 0.79063 0.78943 0.79240 1.19328 1.19770 1.18682 1.21600 0.92379 0.80056 1.52776 0.87952 1.83853 1.35316 1.11915 1.72677 1.19415 0.90211 0.86837 0.91097 1.21121 0.93145 0.99142 1.10893 1.20894 0.99403 0.90338 0.93367 1.20925 0.93329 0.91304 1.20755 1.96539 1.70669 1.34303 1.97796 1.21099 0.91701 0.97360 0.92749 1.17771 0.91200 0.91217 1.18619 1.21824 0.92796 0.90669 0.84739 1.23038 0.94176 1.05943 1.16545 1.86035 1.07621 1.26365 1.59735 1.24353 0.90578 0.92434 0.91847 1.68700 1.38153 1.08841 1.16834 1.42746 1.11803 1.26053 1.49415 1.17479 0.89156 0.79385 0.78062 1.90938 1.53939 1.49785 1.42337 0.90937 0.83986 0.85781 0.84310 0.82331 0.81268 0.74119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.43 13.67 55.48 0.76 -20.67 16 2 C 0.05 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.95 17.74 29.55 -169.99 -5.02 12.72 16 4 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 5 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 6 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 7 C -0.39 -9.29 9.49 30.90 0.29 -9.00 16 8 H 0.10 2.17 5.21 -52.49 -0.27 1.90 16 9 O -0.14 -3.34 9.10 0.85 0.01 -3.33 16 10 C 0.18 3.74 6.67 -38.50 -0.26 3.49 16 11 C -0.22 -3.99 9.16 -39.46 -0.36 -4.35 16 12 C -0.02 -0.31 9.77 -39.47 -0.39 -0.69 16 13 C -0.18 -2.88 6.22 -39.55 -0.25 -3.12 16 14 Br -0.08 -1.03 33.69 -68.01 -2.29 -3.33 16 15 C -0.01 -0.12 8.26 -39.08 -0.32 -0.44 16 16 C -0.18 -3.40 5.78 -104.92 -0.61 -4.01 16 17 C 0.13 2.30 9.42 -37.03 -0.35 1.95 16 18 C -0.28 -4.69 6.30 -37.07 -0.23 -4.93 16 19 S -0.03 -0.44 19.16 -107.50 -2.06 -2.50 16 20 C 0.40 5.34 8.97 -88.60 -0.80 4.55 16 21 N -0.69 -8.59 14.14 30.84 0.44 -8.15 16 22 N -0.65 -8.94 5.30 -13.62 -0.07 -9.02 16 23 C 0.57 9.49 7.98 -13.98 -0.11 9.37 16 24 O -0.50 -9.62 17.91 5.19 0.09 -9.53 16 25 H 0.28 6.62 8.31 -40.82 -0.34 6.29 16 26 H 0.14 2.44 5.64 -52.48 -0.30 2.15 16 27 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 28 H 0.14 2.13 4.99 -33.38 -0.17 1.97 16 29 H 0.16 3.06 7.89 -52.49 -0.41 2.65 16 30 H 0.37 3.86 8.92 -40.82 -0.36 3.49 16 31 H 0.42 4.95 8.93 -40.82 -0.36 4.59 16 LS Contribution 315.27 15.07 4.75 4.75 Total: -1.00 -26.21 315.27 -8.31 -34.51 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -1.44 Total: 10.74 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -3.47 Total: -6.20 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 1.12 Total: -37.84 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.10 Total: -12.86 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.02 Total: 12.72 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -2.06 Total: -2.50 kcal Atomic # 35 Polarization: -1.03 SS G_CDS: -2.29 Total: -3.33 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.21 -8.31 -34.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006828690.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.317 kcal (2) G-P(sol) polarization free energy of solvation -26.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds