Wall clock time and date at job start Tue Mar 31 2020 06:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86803 * 120.00223 * 2 1 4 4 H 1.48498 * 109.46855 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47025 * 299.99768 * 3 2 1 6 6 H 1.48501 * 109.46948 * 59.99767 * 3 2 1 7 7 C 1.38639 * 119.99627 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99767 * 180.02562 * 7 2 1 9 9 O 1.34802 * 120.00406 * 359.97438 * 7 2 1 10 10 C 1.35659 * 117.00492 * 185.05803 * 9 7 2 11 11 C 1.39077 * 119.90810 * 354.44939 * 10 9 7 12 12 C 1.37714 * 120.08360 * 179.97438 * 11 10 9 13 13 C 1.39806 * 119.91514 * 359.97438 * 12 11 10 14 14 C 1.47360 * 120.08774 * 179.97438 * 13 12 11 15 15 N 1.29827 * 119.99871 * 179.97438 * 14 13 12 16 16 N 1.40101 * 120.00071 * 180.02562 * 15 14 13 17 17 C 1.34773 * 120.00375 * 180.02562 * 16 15 14 18 18 O 1.21314 * 119.99919 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00187 * 179.97438 * 17 16 15 20 20 H 1.09001 * 109.70972 * 304.41151 * 19 17 16 21 21 C 1.53470 * 109.71019 * 64.99996 * 19 17 16 22 22 O 1.43179 * 108.25990 * 179.39516 * 21 19 17 23 23 C 1.36104 * 116.71053 * 313.82617 * 22 21 19 24 24 C 1.38705 * 119.39340 * 197.14582 * 23 22 21 25 25 C 1.38202 * 120.06659 * 180.24265 * 24 23 22 26 26 C 1.38253 * 120.10988 * 0.02562 * 25 24 23 27 27 C 1.38191 * 120.11372 * 359.92359 * 26 25 24 28 28 C 1.38703 * 120.06663 * 0.26877 * 27 26 25 29 29 O 1.36116 * 119.38886 * 180.55188 * 28 27 26 30 30 C 1.39809 * 119.82674 * 0.25670 * 13 12 11 31 31 C 1.37724 * 119.90857 * 359.50791 * 30 13 12 32 32 H 0.97002 * 119.99590 * 0.02562 * 1 2 3 33 33 H 1.07999 * 119.95863 * 359.97438 * 11 10 9 34 34 H 1.08007 * 120.03943 * 179.97438 * 12 11 10 35 35 H 1.07996 * 119.99974 * 0.02562 * 14 13 12 36 36 H 0.97005 * 119.99884 * 0.02562 * 16 15 14 37 37 H 1.09004 * 109.70539 * 59.70704 * 21 19 17 38 38 H 1.09002 * 109.70528 * 299.09050 * 21 19 17 39 39 H 1.07997 * 119.97024 * 0.22825 * 24 23 22 40 40 H 1.07997 * 119.94065 * 180.02562 * 25 24 23 41 41 H 1.08005 * 119.93956 * 179.97438 * 26 25 24 42 42 H 1.08004 * 119.96329 * 179.97438 * 27 26 25 43 43 H 1.07995 * 120.05024 * 179.74309 * 30 13 12 44 44 H 1.08000 * 119.95475 * 180.23361 * 31 30 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8910 2.3964 -1.2126 6 1 1.8909 2.3964 1.2125 7 6 2.0087 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3347 -2.3681 -0.0005 10 6 2.0694 -3.5036 0.1055 11 6 3.4584 -3.4346 0.0913 12 6 4.2078 -4.5850 0.1992 13 6 3.5706 -5.8231 0.3237 14 6 4.3688 -7.0565 0.4389 15 7 3.7753 -8.2053 0.5549 16 7 4.5341 -9.3779 0.6649 17 6 3.9180 -10.5705 0.7848 18 8 2.7063 -10.6288 0.7970 19 6 4.7342 -11.8318 0.9026 20 1 5.4156 -11.9092 0.0553 21 6 5.5358 -11.8093 2.2111 22 8 6.2871 -13.0250 2.2979 23 6 5.6212 -14.1773 2.0128 24 6 6.1593 -15.3914 2.4132 25 6 5.4975 -16.5703 2.1265 26 6 4.2979 -16.5429 1.4397 27 6 3.7558 -15.3366 1.0389 28 6 4.4170 -14.1501 1.3199 29 8 3.8650 -12.9690 0.9286 30 6 2.1741 -5.8887 0.3327 31 6 1.4317 -4.7333 0.2292 32 1 -0.4850 0.8401 -0.0004 33 1 3.9500 -2.4778 -0.0044 34 1 5.2865 -4.5306 0.1877 35 1 5.4474 -7.0046 0.4276 36 1 5.5029 -9.3313 0.6548 37 1 4.8541 -11.7372 3.0586 38 1 6.2149 -10.9567 2.2114 39 1 7.0965 -15.4156 2.9492 40 1 5.9181 -17.5145 2.4396 41 1 3.7832 -17.4659 1.2168 42 1 2.8188 -15.3181 0.5022 43 1 1.6781 -6.8436 0.4244 44 1 0.3529 -4.7827 0.2398 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008082265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:16 Heat of formation + Delta-G solvation = -26.181195 kcal Electronic energy + Delta-G solvation = -30125.179394 eV Core-core repulsion = 25589.816232 eV Total energy + Delta-G solvation = -4535.363162 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.125 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.91494 -39.77029 -39.16189 -38.02887 -37.74343 -37.11741 -35.90990 -33.10544 -32.44511 -31.44153 -31.10516 -30.38465 -29.25423 -28.30627 -25.90120 -25.59495 -23.43033 -23.12305 -22.23079 -21.78935 -20.77848 -20.36103 -19.26519 -18.43382 -18.22577 -17.90337 -17.21291 -16.77381 -16.66428 -16.07003 -15.69340 -15.26783 -15.04527 -15.00307 -14.66859 -14.61266 -14.48129 -14.31983 -14.29038 -13.85379 -13.78976 -13.59665 -12.89009 -12.69976 -12.59998 -12.52080 -12.38503 -11.84750 -11.83701 -11.67020 -11.41190 -11.29647 -11.08089 -11.01096 -10.83837 -10.53904 -10.27718 -10.02643 -9.49211 -9.36199 -9.11566 -8.84351 -8.55895 -8.34881 -7.19903 -6.63147 -4.19392 0.83739 0.84393 1.22212 1.78643 2.14904 2.16275 2.51760 2.88245 2.92740 3.04178 3.08081 3.10514 3.26940 3.58754 3.82740 3.95571 4.09415 4.15572 4.45134 4.50156 4.56771 4.75334 4.78496 4.83013 4.94067 4.94263 4.95736 4.98262 5.12808 5.35686 5.49556 5.67423 5.69225 5.70789 5.83937 6.02175 6.08376 6.15340 6.27325 6.35956 6.56120 6.73533 6.78428 6.89471 6.90957 7.09819 7.13513 7.27018 7.42925 7.64366 7.81804 8.23691 8.81505 9.48721 10.53600 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.038373 B = 0.001278 C = 0.001246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.501010 B =21907.775282 C =22469.411791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.041 3.959 3 Si 0.945 3.055 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.393 4.393 8 H 0.098 0.902 9 O -0.164 6.164 10 C 0.170 3.830 11 C -0.242 4.242 12 C -0.031 4.031 13 C -0.178 4.178 14 C 0.159 3.841 15 N -0.267 5.267 16 N -0.582 5.582 17 C 0.538 3.462 18 O -0.474 6.474 19 C 0.042 3.958 20 H 0.114 0.886 21 C 0.034 3.966 22 O -0.300 6.300 23 C 0.044 3.956 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.113 4.113 27 C -0.109 4.109 28 C 0.053 3.947 29 O -0.277 6.277 30 C -0.023 4.023 31 C -0.201 4.201 32 H 0.273 0.727 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.378 0.622 37 H 0.088 0.912 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.126 0.874 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.118 -26.482 3.288 31.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.165 4.165 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.469 4.469 8 H 0.115 0.885 9 O -0.064 6.064 10 C 0.113 3.887 11 C -0.262 4.262 12 C -0.052 4.052 13 C -0.183 4.183 14 C -0.048 4.048 15 N -0.073 5.073 16 N -0.325 5.325 17 C 0.321 3.679 18 O -0.343 6.343 19 C -0.020 4.020 20 H 0.131 0.869 21 C -0.043 4.043 22 O -0.214 6.214 23 C 0.000 4.000 24 C -0.130 4.130 25 C -0.135 4.135 26 C -0.132 4.132 27 C -0.128 4.128 28 C 0.008 3.992 29 O -0.190 6.190 30 C -0.044 4.044 31 C -0.220 4.220 32 H 0.083 0.917 33 H 0.150 0.850 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.216 0.784 37 H 0.107 0.893 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.156 0.844 43 H 0.144 0.856 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.962 -26.869 3.340 30.464 hybrid contribution 1.940 1.345 -0.111 2.364 sum 15.903 -25.523 3.228 30.245 Atomic orbital electron populations 1.70051 1.06105 1.28086 1.44245 1.25383 0.95895 0.99125 0.96086 0.85591 0.79167 0.79925 0.78440 1.18901 1.19961 1.19957 1.21492 0.92085 0.80588 1.52722 0.88506 1.83945 1.34930 1.11779 1.75787 1.19605 0.90349 0.87897 0.90809 1.21043 0.93623 0.98947 1.12540 1.20774 0.98378 0.90988 0.95080 1.17754 0.92720 0.89651 1.18149 1.24507 0.97184 0.90805 0.92304 1.75254 1.21478 0.92004 1.18602 1.46673 1.07742 1.04452 1.73606 1.19242 0.88424 0.82078 0.78141 1.90800 1.13285 1.85462 1.44751 1.22799 0.92303 0.86213 1.00727 0.86859 1.23583 0.96887 0.87165 0.96620 1.86342 1.37009 1.12476 1.85592 1.18950 0.93785 0.87393 0.99901 1.20463 1.01533 0.89261 1.01764 1.20962 0.95456 0.97563 0.99501 1.20967 0.96089 0.97182 0.98914 1.20515 1.01270 0.89084 1.01932 1.19011 0.94488 0.86570 0.99113 1.86426 1.35340 1.13884 1.83341 1.20917 0.92488 0.97375 0.93585 1.20208 0.99989 0.90031 1.11814 0.91684 0.85002 0.86846 0.87353 0.78396 0.89337 0.85429 0.84650 0.84903 0.84820 0.84415 0.85641 0.86033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.86 13.67 55.48 0.76 -23.10 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.31 29.55 -169.99 -5.02 14.29 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.39 -10.32 9.48 30.88 0.29 -10.03 16 8 H 0.10 2.31 5.19 -52.48 -0.27 2.04 16 9 O -0.16 -4.44 9.75 0.41 0.00 -4.43 16 10 C 0.17 3.88 6.65 -38.96 -0.26 3.62 16 11 C -0.24 -4.76 9.15 -39.46 -0.36 -5.12 16 12 C -0.03 -0.51 9.78 -39.19 -0.38 -0.89 16 13 C -0.18 -2.89 5.87 -105.01 -0.62 -3.51 16 14 C 0.16 2.07 10.74 -14.69 -0.16 1.92 16 15 N -0.27 -3.92 10.15 32.14 0.33 -3.60 16 16 N -0.58 -6.44 6.23 31.22 0.19 -6.24 16 17 C 0.54 6.86 7.31 -10.99 -0.08 6.78 16 18 O -0.47 -8.56 16.86 -14.19 -0.24 -8.80 16 19 C 0.04 0.40 3.43 -27.64 -0.09 0.30 16 20 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 21 C 0.03 0.25 6.52 37.40 0.24 0.50 16 22 O -0.30 -2.69 10.42 -32.85 -0.34 -3.03 16 23 C 0.04 0.42 6.49 -39.14 -0.25 0.17 16 24 C -0.11 -0.84 9.96 -39.42 -0.39 -1.23 16 25 C -0.12 -0.72 10.04 -39.59 -0.40 -1.12 16 26 C -0.11 -0.74 10.04 -39.59 -0.40 -1.14 16 27 C -0.11 -0.96 9.96 -39.43 -0.39 -1.35 16 28 C 0.05 0.56 6.49 -39.14 -0.25 0.31 16 29 O -0.28 -3.38 9.62 -47.08 -0.45 -3.83 16 30 C -0.02 -0.43 9.57 -39.18 -0.37 -0.80 16 31 C -0.20 -4.13 9.97 -39.46 -0.39 -4.53 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.13 2.56 5.62 -52.49 -0.29 2.26 16 34 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.11 0.97 8.02 -52.49 -0.42 0.55 16 36 H 0.38 2.47 8.50 -182.59 -1.55 0.91 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.13 0.52 7.99 -51.93 -0.42 0.11 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 41 H 0.13 0.54 8.06 -52.48 -0.42 0.11 16 42 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 43 H 0.13 2.23 7.55 -52.49 -0.40 1.84 16 44 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 390.35 15.07 5.88 5.88 Total: -1.00 -34.66 390.35 -9.13 -43.80 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.87 Total: 4.23 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -4.37 Total: -15.16 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 1.28 Total: -32.94 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -1.03 Total: -20.09 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.66 -9.13 -43.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008082265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.615 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds