Wall clock time and date at job start Tue Mar 31 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86803 * 120.00223 * 2 1 4 4 H 1.48498 * 109.46855 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47025 * 299.99768 * 3 2 1 6 6 H 1.48501 * 109.46948 * 59.99767 * 3 2 1 7 7 C 1.38639 * 119.99627 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99767 * 180.02562 * 7 2 1 9 9 O 1.34802 * 120.00406 * 359.97438 * 7 2 1 10 10 C 1.35659 * 117.00492 * 185.05803 * 9 7 2 11 11 C 1.39077 * 119.90810 * 354.44939 * 10 9 7 12 12 C 1.37714 * 120.08360 * 179.97438 * 11 10 9 13 13 C 1.39806 * 119.91514 * 359.97438 * 12 11 10 14 14 C 1.47360 * 120.08774 * 179.97438 * 13 12 11 15 15 N 1.29827 * 119.99871 * 179.97438 * 14 13 12 16 16 N 1.40101 * 120.00071 * 180.02562 * 15 14 13 17 17 C 1.34773 * 120.00375 * 180.02562 * 16 15 14 18 18 O 1.21314 * 119.99919 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00187 * 179.97438 * 17 16 15 20 20 H 1.09001 * 109.70972 * 304.41151 * 19 17 16 21 21 C 1.53470 * 109.71019 * 64.99996 * 19 17 16 22 22 O 1.43179 * 108.25990 * 179.39516 * 21 19 17 23 23 C 1.36104 * 116.71053 * 313.82617 * 22 21 19 24 24 C 1.38705 * 119.39340 * 197.14582 * 23 22 21 25 25 C 1.38202 * 120.06659 * 180.24265 * 24 23 22 26 26 C 1.38253 * 120.10988 * 0.02562 * 25 24 23 27 27 C 1.38191 * 120.11372 * 359.92359 * 26 25 24 28 28 C 1.38703 * 120.06663 * 0.26877 * 27 26 25 29 29 O 1.36116 * 119.38886 * 180.55188 * 28 27 26 30 30 C 1.39809 * 119.82674 * 0.25670 * 13 12 11 31 31 C 1.37724 * 119.90857 * 359.50791 * 30 13 12 32 32 H 0.97002 * 119.99590 * 0.02562 * 1 2 3 33 33 H 1.07999 * 119.95863 * 359.97438 * 11 10 9 34 34 H 1.08007 * 120.03943 * 179.97438 * 12 11 10 35 35 H 1.07996 * 119.99974 * 0.02562 * 14 13 12 36 36 H 0.97005 * 119.99884 * 0.02562 * 16 15 14 37 37 H 1.09004 * 109.70539 * 59.70704 * 21 19 17 38 38 H 1.09002 * 109.70528 * 299.09050 * 21 19 17 39 39 H 1.07997 * 119.97024 * 0.22825 * 24 23 22 40 40 H 1.07997 * 119.94065 * 180.02562 * 25 24 23 41 41 H 1.08005 * 119.93956 * 179.97438 * 26 25 24 42 42 H 1.08004 * 119.96329 * 179.97438 * 27 26 25 43 43 H 1.07995 * 120.05024 * 179.74309 * 30 13 12 44 44 H 1.08000 * 119.95475 * 180.23361 * 31 30 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8910 2.3964 -1.2126 6 1 1.8909 2.3964 1.2125 7 6 2.0087 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3347 -2.3681 -0.0005 10 6 2.0694 -3.5036 0.1055 11 6 3.4584 -3.4346 0.0913 12 6 4.2078 -4.5850 0.1992 13 6 3.5706 -5.8231 0.3237 14 6 4.3688 -7.0565 0.4389 15 7 3.7753 -8.2053 0.5549 16 7 4.5341 -9.3779 0.6649 17 6 3.9180 -10.5705 0.7848 18 8 2.7063 -10.6288 0.7970 19 6 4.7342 -11.8318 0.9026 20 1 5.4156 -11.9092 0.0553 21 6 5.5358 -11.8093 2.2111 22 8 6.2871 -13.0250 2.2979 23 6 5.6212 -14.1773 2.0128 24 6 6.1593 -15.3914 2.4132 25 6 5.4975 -16.5703 2.1265 26 6 4.2979 -16.5429 1.4397 27 6 3.7558 -15.3366 1.0389 28 6 4.4170 -14.1501 1.3199 29 8 3.8650 -12.9690 0.9286 30 6 2.1741 -5.8887 0.3327 31 6 1.4317 -4.7333 0.2292 32 1 -0.4850 0.8401 -0.0004 33 1 3.9500 -2.4778 -0.0044 34 1 5.2865 -4.5306 0.1877 35 1 5.4474 -7.0046 0.4276 36 1 5.5029 -9.3313 0.6548 37 1 4.8541 -11.7372 3.0586 38 1 6.2149 -10.9567 2.2114 39 1 7.0965 -15.4156 2.9492 40 1 5.9181 -17.5145 2.4396 41 1 3.7832 -17.4659 1.2168 42 1 2.8188 -15.3181 0.5022 43 1 1.6781 -6.8436 0.4244 44 1 0.3529 -4.7827 0.2398 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008082265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:15 Heat of formation + Delta-G solvation = -49.130527 kcal Electronic energy + Delta-G solvation = -30126.174552 eV Core-core repulsion = 25589.816232 eV Total energy + Delta-G solvation = -4536.358320 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.125 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.60296 -40.86663 -40.67381 -38.78270 -38.57093 -38.34700 -37.20267 -34.46835 -33.94275 -32.33632 -31.90722 -31.67649 -30.26134 -29.35191 -27.50152 -26.51228 -24.55337 -23.88066 -23.64163 -22.74548 -21.76599 -21.54264 -20.05488 -19.85622 -19.28747 -18.88151 -18.50363 -17.83791 -17.52634 -16.83209 -16.52158 -16.45070 -16.27313 -15.96160 -15.91755 -15.70277 -15.59402 -15.40133 -15.24021 -15.09436 -14.90005 -14.50457 -14.47994 -14.07851 -13.90691 -13.55046 -13.21838 -12.95362 -12.88774 -12.76320 -12.52722 -12.44977 -12.41561 -12.25470 -12.06432 -11.76541 -11.35442 -11.17960 -11.03308 -10.91962 -10.30947 -9.84924 -9.70263 -9.18461 -8.75506 -8.49107 -6.16488 -0.04633 0.25190 0.26308 0.61563 0.90600 1.04722 1.38405 1.44967 1.57036 1.74238 1.90356 2.17614 2.19976 2.69694 2.87105 2.90908 3.13071 3.19709 3.45002 3.47473 3.53703 3.75107 3.95315 3.96580 4.10026 4.16548 4.21554 4.27557 4.29906 4.39815 4.50531 4.50898 4.61979 4.78028 4.81014 4.99463 5.11687 5.14754 5.18526 5.26383 5.49402 5.53563 5.62494 5.65079 5.65574 5.72635 5.93054 6.00353 6.11441 6.25337 6.38981 6.95217 7.29069 7.73265 8.73689 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.038373 B = 0.001278 C = 0.001246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.501010 B =21907.775282 C =22469.411791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.023 4.023 3 Si 1.021 2.979 4 H -0.243 1.243 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.414 4.414 8 H 0.113 0.887 9 O -0.226 6.226 10 C 0.135 3.865 11 C -0.246 4.246 12 C -0.014 4.014 13 C -0.154 4.154 14 C 0.167 3.833 15 N -0.303 5.303 16 N -0.562 5.562 17 C 0.541 3.459 18 O -0.537 6.537 19 C 0.047 3.953 20 H 0.142 0.858 21 C 0.037 3.963 22 O -0.302 6.302 23 C 0.027 3.973 24 C -0.117 4.117 25 C -0.110 4.110 26 C -0.110 4.110 27 C -0.128 4.128 28 C 0.026 3.974 29 O -0.310 6.310 30 C -0.030 4.030 31 C -0.216 4.216 32 H 0.273 0.727 33 H 0.134 0.866 34 H 0.171 0.829 35 H 0.168 0.832 36 H 0.408 0.592 37 H 0.076 0.924 38 H 0.168 0.832 39 H 0.154 0.846 40 H 0.166 0.834 41 H 0.161 0.839 42 H 0.135 0.865 43 H 0.127 0.873 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.655 -29.238 3.821 36.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.221 4.221 3 Si 0.840 3.160 4 H -0.166 1.166 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.489 4.489 8 H 0.131 0.869 9 O -0.130 6.130 10 C 0.082 3.918 11 C -0.265 4.265 12 C -0.034 4.034 13 C -0.158 4.158 14 C -0.041 4.041 15 N -0.108 5.108 16 N -0.307 5.307 17 C 0.326 3.674 18 O -0.410 6.410 19 C -0.014 4.014 20 H 0.159 0.841 21 C -0.039 4.039 22 O -0.216 6.216 23 C -0.018 4.018 24 C -0.135 4.135 25 C -0.127 4.127 26 C -0.128 4.128 27 C -0.147 4.147 28 C -0.018 4.018 29 O -0.225 6.225 30 C -0.050 4.050 31 C -0.236 4.236 32 H 0.082 0.918 33 H 0.152 0.848 34 H 0.189 0.811 35 H 0.185 0.815 36 H 0.250 0.750 37 H 0.094 0.906 38 H 0.185 0.815 39 H 0.171 0.829 40 H 0.183 0.817 41 H 0.178 0.822 42 H 0.153 0.847 43 H 0.145 0.855 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 19.590 -29.688 3.876 35.779 hybrid contribution 0.396 1.564 -0.229 1.629 sum 19.986 -28.124 3.647 34.695 Atomic orbital electron populations 1.70207 1.08276 1.28935 1.48191 1.26675 0.96797 1.03007 0.95578 0.84488 0.78632 0.74516 0.78340 1.16631 1.19630 1.19664 1.22013 0.92965 0.80983 1.52975 0.86949 1.83928 1.36568 1.12907 1.79636 1.20103 0.92090 0.87423 0.92165 1.21248 0.92360 1.00700 1.12204 1.21239 1.00890 0.89012 0.92297 1.18186 0.91954 0.91763 1.13872 1.24538 0.99381 0.88680 0.91477 1.75134 1.24497 0.93592 1.17595 1.46345 1.09018 1.02890 1.72427 1.19909 0.87933 0.83213 0.76356 1.90779 1.16141 1.86430 1.47684 1.22887 0.91574 0.83942 1.03005 0.84091 1.23741 0.97305 0.88025 0.94833 1.86334 1.37063 1.12633 1.85617 1.19208 0.93787 0.88287 1.00484 1.20829 1.02223 0.88980 1.01481 1.21394 0.94817 0.98490 0.98037 1.21331 0.96262 0.97263 0.97900 1.20764 1.01543 0.89729 1.02645 1.19295 0.95540 0.86323 1.00689 1.86358 1.37048 1.15062 1.84026 1.21051 0.94004 0.96341 0.93646 1.20311 0.99895 0.90655 1.12692 0.91770 0.84816 0.81121 0.81490 0.75016 0.90605 0.81460 0.82864 0.81671 0.82164 0.84697 0.85489 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.23 13.67 21.61 0.30 -54.93 16 2 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 3 Si 1.02 40.74 29.55 68.60 2.03 42.77 16 4 H -0.24 -8.67 7.11 99.48 0.71 -7.96 16 5 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 6 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.41 -22.86 9.48 67.92 0.64 -22.22 16 8 H 0.11 5.50 5.19 -2.91 -0.02 5.48 16 9 O -0.23 -13.14 9.75 -21.45 -0.21 -13.35 16 10 C 0.13 6.42 6.65 22.67 0.15 6.57 16 11 C -0.25 -9.44 9.15 22.35 0.20 -9.23 16 12 C -0.01 -0.40 9.78 22.53 0.22 -0.18 16 13 C -0.15 -4.47 5.87 -20.12 -0.12 -4.59 16 14 C 0.17 3.48 10.74 87.39 0.94 4.42 16 15 N -0.30 -7.85 10.15 -52.23 -0.53 -8.38 16 16 N -0.56 -10.36 6.23 -173.51 -1.08 -11.44 16 17 C 0.54 12.94 7.31 87.66 0.64 13.58 16 18 O -0.54 -19.62 16.86 15.72 0.26 -19.35 16 19 C 0.05 0.82 3.43 30.00 0.10 0.92 16 20 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 21 C 0.04 0.46 6.52 72.14 0.47 0.93 16 22 O -0.30 -4.70 10.42 -82.51 -0.86 -5.56 16 23 C 0.03 0.47 6.49 22.56 0.15 0.62 16 24 C -0.12 -1.46 9.96 22.37 0.22 -1.24 16 25 C -0.11 -1.01 10.04 22.26 0.22 -0.79 16 26 C -0.11 -1.20 10.04 22.26 0.22 -0.98 16 27 C -0.13 -2.19 9.96 22.37 0.22 -1.97 16 28 C 0.03 0.54 6.49 22.55 0.15 0.68 16 29 O -0.31 -7.62 9.62 -69.09 -0.66 -8.28 16 30 C -0.03 -1.09 9.57 22.53 0.22 -0.88 16 31 C -0.22 -9.36 9.97 22.35 0.22 -9.14 16 32 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.13 5.05 5.62 -2.91 -0.02 5.03 16 34 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 35 H 0.17 1.58 8.02 -2.91 -0.02 1.55 16 36 H 0.41 3.06 8.50 -213.31 -1.81 1.24 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.17 0.60 7.99 -2.39 -0.02 0.58 16 39 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.17 0.43 8.06 -2.91 -0.02 0.40 16 41 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 42 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 43 H 0.13 4.55 7.55 -2.91 -0.02 4.52 16 44 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -86.54 390.35 3.85 -82.69 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.74 Total: 20.09 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 5.35 Total: -24.25 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -1.32 Total: -74.76 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -1.47 Total: -46.54 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -86.54 3.85 -82.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008082265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.563 kcal (2) G-P(sol) polarization free energy of solvation -86.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds