Wall clock time and date at job start Tue Mar 31 2020 06:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00146 * 2 1 4 4 H 1.48510 * 109.46909 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47140 * 299.99356 * 3 2 1 6 6 H 1.48495 * 109.47176 * 60.00081 * 3 2 1 7 7 C 1.37877 * 119.99555 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99838 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00507 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47552 * 179.97438 * 9 7 2 11 11 C 1.36824 * 125.06856 * 265.03124 * 10 9 7 12 12 C 1.34238 * 109.93264 * 179.97438 * 11 10 9 13 13 C 1.50698 * 126.50098 * 179.97438 * 12 11 10 14 14 N 1.46902 * 109.47201 * 260.02335 * 13 12 11 15 15 C 1.46900 * 111.00308 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.47207 * 180.02562 * 15 14 13 17 17 O 1.42893 * 109.47267 * 64.99934 * 16 15 14 18 18 C 1.35956 * 117.00026 * 179.97438 * 17 16 15 19 19 C 1.38657 * 120.06128 * 359.97438 * 18 17 16 20 20 C 1.38184 * 119.96964 * 180.02562 * 19 18 17 21 21 C 1.38265 * 120.09281 * 359.97438 * 20 19 18 22 22 C 1.38248 * 120.12705 * 0.02562 * 21 20 19 23 23 C 1.38332 * 120.03366 * 359.97438 * 22 21 20 24 24 F 1.35103 * 120.05240 * 180.02562 * 23 22 21 25 25 C 1.46490 * 106.99763 * 0.26129 * 12 11 10 26 26 C 1.39630 * 134.03314 * 180.50975 * 25 12 11 27 27 C 1.36624 * 119.76411 * 179.56718 * 26 25 12 28 28 C 1.38827 * 120.52763 * 359.69834 * 27 26 25 29 29 C 1.37740 * 120.66871 * 0.02562 * 28 27 26 30 30 C 1.37694 * 125.05835 * 84.98349 * 10 9 7 31 31 H 0.96999 * 119.99801 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.46517 * 59.99970 * 9 7 2 33 33 H 1.08997 * 109.47088 * 300.00663 * 9 7 2 34 34 H 1.08005 * 125.03476 * 359.95443 * 11 10 9 35 35 H 1.09000 * 109.47400 * 140.02655 * 13 12 11 36 36 H 1.09002 * 109.47315 * 20.02183 * 13 12 11 37 37 H 1.00897 * 111.00090 * 303.95405 * 14 13 12 38 38 H 1.08997 * 109.47263 * 59.99365 * 15 14 13 39 39 H 1.09007 * 109.46933 * 299.99823 * 15 14 13 40 40 H 1.08994 * 109.46599 * 304.99408 * 16 15 14 41 41 H 1.09001 * 109.46881 * 185.00066 * 16 15 14 42 42 H 1.08004 * 120.01774 * 0.03769 * 19 18 17 43 43 H 1.08000 * 119.95526 * 180.27319 * 20 19 18 44 44 H 1.08001 * 119.93128 * 179.97438 * 21 20 19 45 45 H 1.07998 * 119.98480 * 180.02562 * 22 21 20 46 46 H 1.08005 * 120.11309 * 359.24215 * 26 25 12 47 47 H 1.08002 * 119.73527 * 179.71868 * 27 26 25 48 48 H 1.08002 * 119.66250 * 180.02562 * 28 27 26 49 49 H 1.08003 * 120.11284 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2028 -3.6128 0.0015 11 6 2.6391 -4.2738 -1.1142 12 6 3.5048 -5.2386 -0.7653 13 6 4.2101 -6.1900 -1.6972 14 7 3.5161 -7.4848 -1.6924 15 6 4.1775 -8.4400 -2.5912 16 6 3.4274 -9.7732 -2.5598 17 8 2.1155 -9.5945 -3.0973 18 6 1.3124 -10.6906 -3.1425 19 6 1.7776 -11.9121 -2.6798 20 6 0.9599 -13.0250 -2.7271 21 6 -0.3221 -12.9223 -3.2348 22 6 -0.7899 -11.7063 -3.6972 23 6 0.0242 -10.5888 -3.6523 24 9 -0.4328 -9.4002 -4.1036 25 6 3.6287 -5.1956 0.6937 26 6 4.3686 -5.9247 1.6268 27 6 4.2667 -5.6258 2.9560 28 6 3.4379 -4.5986 3.3864 29 6 2.7035 -3.8630 2.4826 30 6 2.7926 -4.1494 1.1240 31 1 -0.4850 0.8401 -0.0004 32 1 0.6240 -2.5575 -0.8881 33 1 0.6246 -2.5563 0.8919 34 1 2.3320 -4.0525 -2.1258 35 1 5.2390 -6.3281 -1.3651 36 1 4.2061 -5.7795 -2.7070 37 1 3.4496 -7.8559 -0.7565 38 1 5.2061 -8.5936 -2.2650 39 1 4.1737 -8.0453 -3.6073 40 1 3.3538 -10.1244 -1.5306 41 1 3.9676 -10.5081 -3.1567 42 1 2.7786 -11.9936 -2.2824 43 1 1.3210 -13.9753 -2.3625 44 1 -0.9588 -13.7939 -3.2709 45 1 -1.7918 -11.6286 -4.0929 46 1 5.0151 -6.7254 1.2993 47 1 4.8357 -6.1931 3.6778 48 1 3.3682 -4.3740 4.4405 49 1 2.0613 -3.0660 2.8273 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008710897.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:01 Heat of formation + Delta-G solvation = 1.965383 kcal Electronic energy + Delta-G solvation = -31443.573391 eV Core-core repulsion = 27057.636639 eV Total energy + Delta-G solvation = -4385.936751 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.164 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -48.84570 -40.60556 -40.22418 -37.88508 -36.48657 -36.05353 -33.49148 -32.10679 -30.99304 -30.55080 -29.61750 -29.28913 -28.19550 -26.84767 -24.60315 -23.48758 -22.78321 -22.71360 -21.87543 -21.65775 -20.47603 -18.94391 -18.75136 -17.35226 -16.83700 -16.72406 -16.48692 -16.06872 -15.92374 -15.49989 -15.43533 -15.03894 -14.91218 -14.63366 -14.41206 -14.33564 -14.14949 -13.66242 -13.48230 -13.25789 -13.11102 -13.01241 -12.64512 -12.41642 -12.31759 -12.15344 -11.93238 -11.76151 -11.61401 -11.47741 -11.30346 -11.17573 -11.13336 -10.96135 -10.78397 -10.71745 -10.34336 -10.07236 -9.62008 -9.24877 -8.92066 -8.67094 -8.42511 -8.30196 -7.48001 -6.88239 -6.25463 -4.35924 0.82605 0.98513 1.74650 2.27061 2.84872 3.18258 3.25400 3.28283 3.29129 3.33670 3.87282 4.01703 4.27794 4.29823 4.39598 4.50327 4.56361 4.70477 4.81987 4.86369 4.92510 5.04212 5.06184 5.13437 5.24803 5.31709 5.40470 5.48421 5.52017 5.61864 5.67019 5.68848 5.75572 5.82053 5.87333 5.88710 6.06019 6.13339 6.28376 6.37896 6.41203 6.45415 6.62393 6.87163 7.00731 7.03756 7.07428 7.13445 7.15140 7.42235 7.47073 7.54513 7.65813 7.88048 8.12051 8.19457 8.72761 9.31765 10.79805 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.010287 B = 0.002033 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.251998 B =13767.811094 C =15093.539810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.235 3.765 10 N -0.451 5.451 11 C 0.097 3.903 12 C -0.213 4.213 13 C 0.148 3.852 14 N -0.678 5.678 15 C 0.058 3.942 16 C 0.063 3.937 17 O -0.286 6.286 18 C 0.104 3.896 19 C -0.188 4.188 20 C -0.091 4.091 21 C -0.136 4.136 22 C -0.118 4.118 23 C 0.069 3.931 24 F -0.129 7.129 25 C -0.104 4.104 26 C -0.085 4.085 27 C -0.156 4.156 28 C -0.122 4.122 29 C -0.107 4.107 30 C 0.106 3.894 31 H 0.267 0.733 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.159 0.841 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.341 0.659 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.141 0.859 46 H 0.105 0.895 47 H 0.110 0.890 48 H 0.115 0.885 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.680 -25.665 -4.291 26.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.083 0.917 9 C 0.117 3.883 10 N -0.127 5.127 11 C -0.034 4.034 12 C -0.220 4.220 13 C 0.019 3.981 14 N -0.310 5.310 15 C -0.072 4.072 16 C -0.013 4.013 17 O -0.198 6.198 18 C 0.057 3.943 19 C -0.207 4.207 20 C -0.110 4.110 21 C -0.154 4.154 22 C -0.136 4.136 23 C 0.049 3.951 24 F -0.107 7.107 25 C -0.110 4.110 26 C -0.104 4.104 27 C -0.176 4.176 28 C -0.141 4.141 29 C -0.127 4.127 30 C -0.003 4.003 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.177 0.823 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.159 0.841 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.153 0.847 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.158 0.842 46 H 0.123 0.877 47 H 0.128 0.872 48 H 0.133 0.867 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.747 -24.780 -4.872 25.697 hybrid contribution 1.127 0.911 0.564 1.555 sum 5.874 -23.869 -4.308 24.956 Atomic orbital electron populations 1.69936 1.06065 1.27537 1.49261 1.24958 0.94945 0.99533 0.94430 0.86336 0.80094 0.82647 0.77845 1.19535 1.20652 1.20655 1.21403 0.93755 0.89867 1.52750 0.91691 1.19704 0.87088 0.82034 0.99510 1.44798 1.36278 1.28130 1.03489 1.21604 0.96346 0.93589 0.91887 1.19683 1.07804 1.03208 0.91328 1.19981 0.93247 0.87144 0.97679 1.60527 1.53709 1.03147 1.13655 1.22000 0.94348 0.91053 0.99763 1.22945 0.81470 0.98550 0.98326 1.86319 1.25100 1.30416 1.77981 1.19126 0.90355 0.87614 0.97236 1.21178 1.01803 0.91893 1.05838 1.21003 0.93716 0.98200 0.98037 1.20902 0.96365 0.97153 1.00968 1.21054 1.00089 0.91399 1.01093 1.17061 0.91278 0.82614 1.04175 1.91542 1.88690 1.43720 1.86795 1.19018 1.00690 0.98445 0.92802 1.19975 0.99019 0.99135 0.92280 1.20396 1.01985 0.99960 0.95230 1.20627 0.98252 0.96867 0.98387 1.20163 1.01706 1.00956 0.89909 1.18250 0.97336 0.95742 0.88981 0.92330 0.93452 0.93823 0.82342 0.95228 0.90790 0.84053 0.93151 0.89754 0.91862 0.91570 0.84663 0.85237 0.85009 0.84157 0.87688 0.87231 0.86725 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.15 13.29 55.43 0.74 -24.42 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.54 -14.68 9.39 -34.44 -0.32 -15.00 16 8 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.23 5.92 5.75 -5.20 -0.03 5.89 16 10 N -0.45 -10.12 2.76 -115.71 -0.32 -10.44 16 11 C 0.10 1.93 11.19 -16.73 -0.19 1.74 16 12 C -0.21 -3.78 5.83 -102.71 -0.60 -4.37 16 13 C 0.15 2.05 6.21 -4.98 -0.03 2.01 16 14 N -0.68 -8.67 6.44 -115.05 -0.74 -9.41 16 15 C 0.06 0.55 6.07 -3.82 -0.02 0.53 16 16 C 0.06 0.55 5.02 37.16 0.19 0.73 16 17 O -0.29 -3.59 9.95 -19.60 -0.20 -3.78 16 18 C 0.10 1.19 6.69 -39.18 -0.26 0.92 16 19 C -0.19 -1.59 9.04 -39.45 -0.36 -1.94 16 20 C -0.09 -0.64 10.04 -39.59 -0.40 -1.04 16 21 C -0.14 -0.97 10.04 -39.57 -0.40 -1.37 16 22 C -0.12 -1.06 10.02 -39.54 -0.40 -1.45 16 23 C 0.07 0.82 7.31 -39.30 -0.29 0.54 16 24 F -0.13 -1.87 17.11 2.25 0.04 -1.83 16 25 C -0.10 -1.97 6.35 -105.14 -0.67 -2.64 16 26 C -0.09 -1.38 10.05 -39.65 -0.40 -1.78 16 27 C -0.16 -2.42 9.97 -39.95 -0.40 -2.81 16 28 C -0.12 -2.03 10.01 -39.55 -0.40 -2.43 16 29 C -0.11 -2.13 10.00 -39.43 -0.39 -2.52 16 30 C 0.11 2.26 6.81 -83.98 -0.57 1.69 16 31 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.05 1.23 8.12 -51.93 -0.42 0.81 16 33 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.16 2.85 8.06 -52.48 -0.42 2.42 16 35 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.34 4.33 8.72 -39.29 -0.34 3.99 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.06 0.49 7.66 -51.93 -0.40 0.10 16 41 H 0.07 0.42 7.66 -51.93 -0.40 0.02 16 42 H 0.14 0.84 6.30 -52.48 -0.33 0.51 16 43 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 44 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 46 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 47 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 48 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 49 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 421.43 15.07 6.35 6.35 Total: -1.00 -31.39 421.43 -12.11 -43.50 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.93 Total: 5.58 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -6.03 Total: -21.63 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.32 Total: -44.26 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.20 Total: -3.78 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -31.39 -12.11 -43.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008710897.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.463 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds