Wall clock time and date at job start Tue Mar 31 2020 05:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86796 * 120.00037 * 2 1 4 4 H 1.48502 * 109.47336 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47244 * 300.00014 * 3 2 1 6 6 H 1.48509 * 109.47301 * 59.99943 * 3 2 1 7 7 C 1.40039 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99598 * 179.97438 * 7 2 1 9 9 C 1.39600 * 119.99677 * 0.02562 * 7 2 1 10 10 N 1.31495 * 125.09402 * 179.97438 * 9 7 2 11 11 C 1.30969 * 117.23220 * 179.97438 * 10 9 7 12 12 C 1.47943 * 122.61640 * 179.97438 * 11 10 9 13 13 C 1.39615 * 120.11959 * 144.75357 * 12 11 10 14 14 C 1.37894 * 119.88013 * 179.76468 * 13 12 11 15 15 C 1.38620 * 120.11922 * 0.48632 * 14 13 12 16 16 F 1.35102 * 119.88294 * 179.74515 * 15 14 13 17 17 C 1.38619 * 120.23672 * 359.76330 * 15 14 13 18 18 C 1.37887 * 120.12024 * 0.02562 * 17 15 14 19 19 C 1.38841 * 114.76759 * 0.02562 * 11 10 9 20 20 N 1.37947 * 125.99290 * 179.97438 * 19 11 10 21 21 C 1.34784 * 119.99958 * 179.97438 * 20 19 11 22 22 O 1.21566 * 119.99936 * 359.72840 * 21 20 19 23 23 C 1.47761 * 120.00053 * 179.72547 * 21 20 19 24 24 C 1.39621 * 120.14872 * 359.72362 * 23 21 20 25 25 C 1.37943 * 119.84696 * 179.78984 * 24 23 21 26 26 C 1.38370 * 120.15241 * 0.46555 * 25 24 23 27 27 C 1.38369 * 120.29799 * 359.78774 * 26 25 24 28 28 C 1.37943 * 120.14819 * 359.97438 * 27 26 25 29 29 S 1.76039 * 125.10084 * 0.25157 * 9 7 2 30 30 H 0.96997 * 120.00042 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.06226 * 359.97438 * 13 12 11 32 32 H 1.07999 * 119.94337 * 180.22984 * 14 13 12 33 33 H 1.08002 * 119.93801 * 179.97438 * 17 15 14 34 34 H 1.08007 * 120.05737 * 179.97438 * 18 17 15 35 35 H 0.97000 * 120.00647 * 359.72420 * 20 19 11 36 36 H 1.07995 * 120.07418 * 0.02562 * 24 23 21 37 37 H 1.08006 * 119.92802 * 180.25393 * 25 24 23 38 38 H 1.08000 * 119.85177 * 179.76566 * 26 25 24 39 39 H 1.07998 * 119.92428 * 179.97438 * 27 26 25 40 40 H 1.08001 * 120.07461 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0085 -1.2128 0.0005 8 1 3.0885 -1.2126 0.0001 9 6 1.3105 -2.4217 0.0005 10 7 1.8642 -3.6144 0.0005 11 6 1.0604 -4.6483 0.0011 12 6 1.5547 -6.0427 0.0006 13 6 0.8598 -7.0327 0.6979 14 6 1.3223 -8.3317 0.6901 15 6 2.4805 -8.6536 -0.0001 16 9 2.9322 -9.9268 -0.0003 17 6 3.1772 -7.6736 -0.6899 18 6 2.7212 -6.3723 -0.6922 19 6 -0.2919 -4.3338 0.0010 20 7 -1.3344 -5.2372 0.0010 21 6 -2.6081 -4.7964 0.0014 22 8 -2.8382 -3.6027 0.0068 23 6 -3.7248 -5.7640 -0.0047 24 6 -3.4641 -7.1356 -0.0169 25 6 -4.5113 -8.0335 -0.0182 26 6 -5.8178 -7.5776 -0.0172 27 6 -6.0832 -6.2196 -0.0106 28 6 -5.0454 -5.3108 -0.0042 29 16 -0.4429 -2.5782 -0.0064 30 1 -0.4850 0.8400 -0.0004 31 1 -0.0403 -6.7822 1.2397 32 1 0.7835 -9.0990 1.2262 33 1 4.0793 -7.9296 -1.2257 34 1 3.2651 -5.6095 -1.2297 35 1 -1.1509 -6.1896 -0.0030 36 1 -2.4449 -7.4927 -0.0213 37 1 -4.3111 -9.0948 -0.0234 38 1 -6.6339 -8.2848 -0.0221 39 1 -7.1052 -5.8704 -0.0103 40 1 -5.2540 -4.2512 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008917120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:14 Heat of formation + Delta-G solvation = -2.647251 kcal Electronic energy + Delta-G solvation = -28965.403090 eV Core-core repulsion = 24750.353002 eV Total energy + Delta-G solvation = -4215.050088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 368.074 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.70877 -40.11864 -39.01740 -38.08262 -37.00532 -34.63019 -33.82486 -31.40354 -31.01804 -30.90199 -30.63756 -28.22137 -26.08182 -24.01034 -23.08248 -22.72339 -22.37706 -21.52058 -20.44924 -19.32895 -18.13180 -17.55565 -17.38462 -16.43188 -16.19125 -15.91378 -15.48378 -15.39851 -15.20955 -14.80956 -14.73683 -14.32534 -14.16923 -13.74657 -13.69718 -13.48559 -13.32589 -13.15309 -12.81650 -12.75660 -12.51364 -12.03565 -11.94370 -11.73000 -11.59694 -11.43946 -11.20453 -10.90428 -10.80078 -10.51474 -10.33116 -9.86577 -9.58543 -9.25308 -9.12756 -9.04690 -8.92398 -8.54603 -7.67783 -7.24233 -7.12712 -6.97637 -4.66392 0.78934 1.23787 1.25347 1.45903 2.34408 2.87490 2.91585 2.99599 3.05498 3.20208 3.56269 3.67642 3.72402 3.91249 3.95849 4.26449 4.45524 4.69586 4.77205 4.80623 4.92029 5.02522 5.10773 5.12487 5.23376 5.26004 5.40145 5.52123 5.60381 5.69403 5.85755 6.09785 6.18976 6.21840 6.27838 6.30039 6.31222 6.43510 6.47864 6.75589 6.78589 6.86514 6.98983 7.12104 7.41753 7.79996 7.89100 8.26383 8.30577 8.64860 9.63301 9.76907 Molecular weight = 368.07amu Principal moments of inertia in cm(-1) A = 0.006465 B = 0.004045 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4330.195839 B = 6919.637559 C =11144.632547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.052 3.948 3 Si 0.943 3.057 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.366 4.366 8 H 0.103 0.897 9 C 0.168 3.832 10 N -0.579 5.579 11 C 0.102 3.898 12 C 0.014 3.986 13 C -0.111 4.111 14 C -0.148 4.148 15 C 0.073 3.927 16 F -0.148 7.148 17 C -0.149 4.149 18 C -0.069 4.069 19 C -0.184 4.184 20 N -0.599 5.599 21 C 0.523 3.477 22 O -0.509 6.509 23 C -0.117 4.117 24 C -0.093 4.093 25 C -0.126 4.126 26 C -0.103 4.103 27 C -0.128 4.128 28 C -0.062 4.062 29 S 0.217 5.783 30 H 0.301 0.699 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.396 0.604 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.636 -11.519 -0.258 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.170 4.170 3 Si 0.766 3.234 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.408 4.408 8 H 0.121 0.879 9 C -0.086 4.086 10 N -0.300 5.300 11 C -0.040 4.040 12 C 0.012 3.988 13 C -0.130 4.130 14 C -0.167 4.167 15 C 0.054 3.946 16 F -0.127 7.127 17 C -0.168 4.168 18 C -0.088 4.088 19 C -0.404 4.404 20 N -0.243 5.243 21 C 0.310 3.690 22 O -0.386 6.386 23 C -0.120 4.120 24 C -0.112 4.112 25 C -0.144 4.144 26 C -0.121 4.121 27 C -0.146 4.146 28 C -0.081 4.081 29 S 0.475 5.525 30 H 0.115 0.885 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.235 0.765 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.333 -9.816 -0.263 12.256 hybrid contribution 0.758 -1.097 0.041 1.334 sum -6.574 -10.913 -0.222 12.742 Atomic orbital electron populations 1.68575 1.07637 1.30981 1.33775 1.26195 0.95070 1.02815 0.92903 0.85639 0.80405 0.78422 0.78918 1.17892 1.19358 1.19360 1.18945 0.95874 0.87357 1.38651 0.87891 1.23896 0.94206 0.93692 0.96758 1.66815 1.35133 0.96654 1.31396 1.18438 0.86480 0.91894 1.07183 1.18526 0.93867 0.91440 0.95016 1.21058 1.00692 0.91682 0.99611 1.20909 0.96509 0.97438 1.01830 1.17712 0.95861 0.78926 1.02133 1.91451 1.88953 1.36927 1.95364 1.21081 1.01134 0.92909 1.01653 1.21214 0.95109 0.94934 0.97509 1.24530 0.89267 0.99718 1.26880 1.42070 1.03853 1.08614 1.69740 1.18308 0.82629 0.88645 0.79437 1.90759 1.82966 1.15721 1.49191 1.19980 0.94084 0.93179 1.04738 1.21353 0.99525 0.92268 0.98074 1.21077 0.92564 0.99699 1.01102 1.21334 0.96789 0.95799 0.98210 1.21156 0.99212 0.93133 1.01070 1.21333 0.90875 1.00957 0.94936 1.86486 1.05524 0.88263 1.72258 0.88546 0.85504 0.85082 0.85057 0.84310 0.76532 0.85895 0.85492 0.85761 0.85413 0.84446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.76 10.60 55.55 0.59 -18.17 16 2 C 0.05 1.20 5.50 -17.30 -0.10 1.11 16 3 Si 0.94 17.25 29.56 -169.99 -5.02 12.22 16 4 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 5 H -0.27 -4.82 7.11 56.52 0.40 -4.41 16 6 H -0.27 -4.83 7.11 56.52 0.40 -4.42 16 7 C -0.37 -9.22 9.42 -38.40 -0.36 -9.58 16 8 H 0.10 2.50 7.85 -52.49 -0.41 2.09 16 9 C 0.17 4.44 7.10 -17.19 -0.12 4.32 16 10 N -0.58 -14.81 10.39 -9.32 -0.10 -14.91 16 11 C 0.10 2.35 6.43 -84.04 -0.54 1.81 16 12 C 0.01 0.27 5.75 -104.89 -0.60 -0.33 16 13 C -0.11 -1.74 8.26 -39.19 -0.32 -2.07 16 14 C -0.15 -2.02 10.01 -39.57 -0.40 -2.42 16 15 C 0.07 1.06 7.30 -39.30 -0.29 0.77 16 16 F -0.15 -2.09 17.26 2.25 0.04 -2.05 16 17 C -0.15 -2.18 10.01 -39.57 -0.40 -2.58 16 18 C -0.07 -1.18 9.65 -39.19 -0.38 -1.56 16 19 C -0.18 -4.25 7.10 -14.58 -0.10 -4.36 16 20 N -0.60 -11.45 4.88 -10.89 -0.05 -11.50 16 21 C 0.52 10.05 7.73 -12.36 -0.10 9.96 16 22 O -0.51 -11.63 13.91 5.31 0.07 -11.55 16 23 C -0.12 -1.74 5.87 -104.97 -0.62 -2.36 16 24 C -0.09 -1.12 9.54 -39.17 -0.37 -1.49 16 25 C -0.13 -1.23 10.03 -39.64 -0.40 -1.63 16 26 C -0.10 -0.95 10.04 -39.48 -0.40 -1.34 16 27 C -0.13 -1.32 10.03 -39.64 -0.40 -1.72 16 28 C -0.06 -0.83 9.60 -39.17 -0.38 -1.21 16 29 S 0.22 5.56 17.47 -107.50 -1.88 3.68 16 30 H 0.30 6.50 8.30 -40.82 -0.34 6.17 16 31 H 0.13 1.88 6.28 -52.49 -0.33 1.55 16 32 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.14 2.45 8.05 -52.48 -0.42 2.03 16 35 H 0.40 6.29 3.83 -40.82 -0.16 6.14 16 36 H 0.12 1.29 6.40 -52.49 -0.34 0.95 16 37 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.14 1.90 7.65 -52.49 -0.40 1.50 16 LS Contribution 363.41 15.07 5.48 5.48 Total: -1.00 -30.05 363.41 -10.44 -40.49 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -3.31 Total: 10.97 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -6.26 Total: -14.66 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.44 Total: -44.59 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.07 Total: -11.55 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.02 Total: 12.22 kcal Atomic # 16 Polarization: 5.56 SS G_CDS: -1.88 Total: 3.68 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.05 -10.44 -40.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008917120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.847 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds