Wall clock time and date at job start Tue Mar 31 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39708 * 120.12682 * 326.13451 * 3 2 1 5 5 C 1.37822 * 119.87202 * 179.97438 * 4 3 2 6 6 C 1.38663 * 120.12727 * 0.02860 * 5 4 3 7 7 F 1.35104 * 119.87534 * 179.97438 * 6 5 4 8 8 C 1.38620 * 120.25079 * 359.97438 * 6 5 4 9 9 C 1.50695 * 119.93783 * 179.97438 * 8 6 5 10 10 O 1.45203 * 109.47194 * 179.97438 * 9 8 6 11 11 C 1.34757 * 116.99829 * 180.02562 * 10 9 8 12 12 O 1.21501 * 120.00268 * 0.02562 * 11 10 9 13 13 C 1.47464 * 119.99798 * 179.73026 * 11 10 9 14 14 C 1.39837 * 120.06373 * 359.97438 * 13 11 10 15 15 C 1.37611 * 119.92958 * 179.74181 * 14 13 11 16 16 C 1.39274 * 120.06805 * 0.51967 * 15 14 13 17 17 N 1.39072 * 119.93686 * 179.74176 * 16 15 14 18 18 C 1.34776 * 120.00013 * 213.66986 * 17 16 15 19 19 O 1.21723 * 119.99925 * 5.27464 * 18 17 16 20 20 C 1.46191 * 119.99959 * 185.27627 * 18 17 16 21 21 H 1.08000 * 120.00168 * 0.02562 * 20 18 17 22 22 C 1.40119 * 120.00414 * 179.97438 * 20 18 17 23 23 N 1.30645 * 119.99782 * 0.02562 * 22 20 18 24 24 Si 1.86799 * 120.00572 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46879 * 60.00389 * 24 22 20 26 26 H 1.48499 * 109.47259 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47142 * 300.00322 * 24 22 20 28 28 C 1.39273 * 120.13151 * 359.75625 * 16 15 14 29 29 C 1.37605 * 120.07107 * 359.97438 * 28 16 15 30 30 C 1.37866 * 120.12576 * 0.25067 * 8 6 5 31 31 H 1.08000 * 120.06452 * 359.97438 * 4 3 2 32 32 H 1.07994 * 119.93880 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47072 * 59.99832 * 9 8 6 34 34 H 1.08998 * 109.47382 * 300.00246 * 9 8 6 35 35 H 1.07994 * 120.03754 * 359.97438 * 14 13 11 36 36 H 1.07998 * 119.97083 * 180.25636 * 15 14 13 37 37 H 0.97003 * 119.99540 * 33.66257 * 17 16 15 38 38 H 0.96994 * 120.00019 * 179.97438 * 23 22 20 39 39 H 1.08003 * 119.96517 * 179.97438 * 28 16 15 40 40 H 1.08006 * 120.03734 * 179.97438 * 29 28 16 41 41 H 1.07999 * 120.06802 * 179.73440 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -1.0024 0.6733 5 6 4.6479 -0.9970 0.6695 6 6 5.3381 0.0018 -0.0005 7 9 6.6891 0.0024 -0.0005 8 6 4.6471 0.9995 -0.6702 9 6 5.4043 2.0819 -1.3956 10 8 4.4639 3.0000 -2.0128 11 6 4.9826 4.0328 -2.7059 12 8 6.1876 4.1623 -2.7924 13 6 4.0877 5.0021 -3.3647 14 6 2.7007 4.8506 -3.2716 15 6 1.8681 5.7598 -3.8830 16 6 2.4056 6.8239 -4.6031 17 7 1.5616 7.7382 -5.2244 18 6 1.9259 8.3069 -6.3908 19 8 2.9472 7.9503 -6.9489 20 6 1.0945 9.3519 -6.9855 21 1 0.1885 9.6686 -6.4901 22 6 1.4734 9.9436 -8.1978 23 7 2.5695 9.5610 -8.7969 24 14 0.4106 11.2785 -8.9581 25 1 0.3056 12.4231 -8.0178 26 1 1.0258 11.7367 -10.2296 27 1 -0.9445 10.7365 -9.2316 28 6 3.7866 6.9742 -4.7024 29 6 4.6243 6.0715 -4.0885 30 6 3.2685 1.0068 -0.6692 31 1 2.7331 -1.7805 1.1959 32 1 5.1913 -1.7721 1.1893 33 1 6.0317 1.6328 -2.1655 34 1 6.0306 2.6243 -0.6873 35 1 2.2833 4.0231 -2.7173 36 1 0.7968 5.6457 -3.8081 37 1 0.7108 7.9664 -4.8183 38 1 2.8316 9.9703 -9.6363 39 1 4.2005 7.8002 -5.2618 40 1 5.6952 6.1883 -4.1662 41 1 2.7311 1.7870 -1.1877 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011312811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:15 Heat of formation + Delta-G solvation = -84.629007 kcal Electronic energy + Delta-G solvation = -30044.439155 eV Core-core repulsion = 25383.081200 eV Total energy + Delta-G solvation = -4661.357955 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.100 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.55196 -40.66936 -39.86821 -39.17578 -37.19507 -36.82982 -36.35797 -33.72040 -32.91901 -32.60774 -31.58933 -30.63477 -29.71010 -27.34506 -26.45675 -24.44705 -23.76276 -22.77284 -22.31755 -20.94864 -19.95626 -19.18905 -18.27299 -17.98898 -17.58961 -17.12636 -16.79618 -16.69524 -16.31133 -16.06807 -15.61831 -15.00505 -14.58754 -14.54274 -14.42056 -14.32970 -14.18559 -14.11007 -13.85686 -13.78680 -13.29273 -13.17267 -13.00533 -12.80910 -12.75825 -12.42889 -12.35476 -12.07035 -11.94799 -11.70462 -11.40767 -11.16848 -11.08738 -10.86528 -10.73193 -10.46908 -10.45849 -9.66410 -9.55789 -9.27852 -9.02604 -8.69546 -7.94207 -7.37215 -6.47429 -4.96000 0.00527 0.50296 1.05124 1.79465 2.22427 2.26767 2.41308 2.74860 3.02372 3.07755 3.09546 3.20526 3.31100 3.53729 3.88135 3.90508 4.06815 4.10073 4.36616 4.40449 4.43158 4.58809 4.80146 4.89616 4.96311 4.99869 5.17928 5.24402 5.28345 5.35132 5.47568 5.53254 5.57835 5.70574 5.85291 6.00909 6.03881 6.21800 6.35190 6.51216 6.77128 6.83612 7.03618 7.10501 7.17698 7.54094 7.79789 7.82749 7.98509 8.71816 8.99925 10.20889 10.42334 Molecular weight = 368.10amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.001686 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.916073 B =16606.180530 C =18069.308845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.253 3.747 3 C -0.036 4.036 4 C -0.042 4.042 5 C -0.151 4.151 6 C 0.138 3.862 7 F -0.127 7.127 8 C -0.123 4.123 9 C 0.111 3.889 10 O -0.355 6.355 11 C 0.522 3.478 12 O -0.515 6.515 13 C -0.189 4.189 14 C -0.035 4.035 15 C -0.196 4.196 16 C 0.239 3.761 17 N -0.694 5.694 18 C 0.537 3.463 19 O -0.554 6.554 20 C -0.535 4.535 21 H 0.074 0.926 22 C 0.085 3.915 23 N -0.755 5.755 24 Si 0.915 3.085 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.266 1.266 28 C -0.147 4.147 29 C -0.027 4.027 30 C -0.021 4.021 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.397 0.603 38 H 0.275 0.725 39 H 0.148 0.852 40 H 0.132 0.868 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.858 -18.123 18.743 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.081 5.081 2 C -0.063 4.063 3 C -0.040 4.040 4 C -0.062 4.062 5 C -0.170 4.170 6 C 0.117 3.883 7 F -0.105 7.105 8 C -0.124 4.124 9 C 0.037 3.963 10 O -0.272 6.272 11 C 0.369 3.631 12 O -0.404 6.404 13 C -0.191 4.191 14 C -0.054 4.054 15 C -0.217 4.217 16 C 0.137 3.863 17 N -0.335 5.335 18 C 0.345 3.655 19 O -0.436 6.436 20 C -0.571 4.571 21 H 0.092 0.908 22 C -0.137 4.137 23 N -0.383 5.383 24 Si 0.739 3.261 25 H -0.190 1.190 26 H -0.203 1.203 27 H -0.191 1.191 28 C -0.168 4.168 29 C -0.046 4.046 30 C -0.041 4.041 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.231 0.769 38 H 0.086 0.914 39 H 0.166 0.834 40 H 0.149 0.851 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.334 -18.226 18.058 25.763 hybrid contribution -0.142 0.625 -0.192 0.669 sum 2.192 -17.601 17.866 25.175 Atomic orbital electron populations 1.81311 1.11884 1.07127 1.07745 1.25482 0.92394 0.94256 0.94178 1.16002 0.84864 0.98868 1.04247 1.21069 0.93131 0.96507 0.95496 1.21023 0.94341 0.99449 1.02147 1.17601 0.77106 0.95536 0.98028 1.91566 1.28417 1.96047 1.94464 1.19543 0.94334 0.96950 1.01592 1.21487 0.89797 0.88045 0.96938 1.86466 1.40323 1.36924 1.63519 1.21242 0.87436 0.79121 0.75314 1.90827 1.16187 1.74106 1.59277 1.18717 0.92554 0.98960 1.08909 1.20986 0.91647 0.97166 0.95617 1.20866 0.99956 0.95501 1.05393 1.18311 0.91056 0.88183 0.88800 1.44340 1.21215 1.43193 1.24736 1.18464 0.86787 0.82405 0.77855 1.90660 1.27287 1.64302 1.61338 1.20836 1.09591 1.19451 1.07195 0.90823 1.25764 0.94784 0.96849 0.96267 1.69960 1.19426 1.35037 1.13878 0.86294 0.80384 0.80771 0.78630 1.19027 1.20296 1.19063 1.21311 0.91888 1.01900 1.01675 1.21049 1.00272 0.91205 0.92080 1.21000 0.92404 0.96372 0.94339 0.83698 0.83165 0.89000 0.89015 0.85364 0.85566 0.76860 0.91440 0.83415 0.85055 0.82686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.48 18.54 41.84 0.78 -3.70 16 2 C 0.25 2.09 15.33 -22.47 -0.34 1.75 16 3 C -0.04 -0.22 5.73 -106.89 -0.61 -0.83 16 4 C -0.04 -0.16 9.75 -39.18 -0.38 -0.55 16 5 C -0.15 -0.61 10.01 -39.58 -0.40 -1.00 16 6 C 0.14 0.85 7.25 -39.28 -0.28 0.57 16 7 F -0.13 -0.92 16.79 2.25 0.04 -0.89 16 8 C -0.12 -0.88 5.88 -104.62 -0.62 -1.50 16 9 C 0.11 1.01 5.44 36.00 0.20 1.20 16 10 O -0.35 -3.98 7.92 -40.65 -0.32 -4.31 16 11 C 0.52 7.52 7.89 34.49 0.27 7.79 16 12 O -0.51 -8.53 16.13 -19.27 -0.31 -8.84 16 13 C -0.19 -2.92 5.88 -104.94 -0.62 -3.53 16 14 C -0.04 -0.49 9.60 -39.21 -0.38 -0.86 16 15 C -0.20 -3.00 9.94 -39.43 -0.39 -3.39 16 16 C 0.24 4.55 6.27 -83.81 -0.53 4.03 16 17 N -0.69 -14.30 5.30 -11.19 -0.06 -14.36 16 18 C 0.54 14.01 7.46 -13.07 -0.10 13.91 16 19 O -0.55 -16.41 12.69 5.17 0.07 -16.35 16 20 C -0.54 -13.84 9.54 -35.69 -0.34 -14.18 16 21 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 22 C 0.09 2.20 5.50 -17.35 -0.10 2.11 16 23 N -0.76 -21.09 11.83 55.55 0.66 -20.43 16 24 Si 0.92 18.72 29.56 -169.99 -5.02 13.69 16 25 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 27 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 28 C -0.15 -2.91 8.62 -39.43 -0.34 -3.25 16 29 C -0.03 -0.46 9.58 -39.22 -0.38 -0.84 16 30 C -0.02 -0.14 9.09 -39.18 -0.36 -0.50 16 31 H 0.15 0.25 8.06 -52.49 -0.42 -0.17 16 32 H 0.15 0.27 8.06 -52.49 -0.42 -0.15 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.13 1.39 7.60 -52.49 -0.40 0.99 16 36 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.40 6.84 8.79 -40.82 -0.36 6.48 16 38 H 0.27 6.97 8.29 -40.82 -0.34 6.63 16 39 H 0.15 3.35 6.41 -52.48 -0.34 3.02 16 40 H 0.13 2.17 7.64 -52.48 -0.40 1.77 16 41 H 0.16 1.07 6.98 -52.49 -0.37 0.71 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -33.30 382.84 -7.62 -40.92 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -3.52 Total: 7.59 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -5.68 Total: 0.91 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 1.37 Total: -38.50 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.57 Total: -29.49 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.04 Total: -0.89 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.30 -7.62 -40.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011312811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.710 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds