Wall clock time and date at job start Tue Mar 31 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39708 * 120.12682 * 326.13451 * 3 2 1 5 5 C 1.37822 * 119.87202 * 179.97438 * 4 3 2 6 6 C 1.38663 * 120.12727 * 0.02860 * 5 4 3 7 7 F 1.35104 * 119.87534 * 179.97438 * 6 5 4 8 8 C 1.38620 * 120.25079 * 359.97438 * 6 5 4 9 9 C 1.50695 * 119.93783 * 179.97438 * 8 6 5 10 10 O 1.45203 * 109.47194 * 179.97438 * 9 8 6 11 11 C 1.34757 * 116.99829 * 180.02562 * 10 9 8 12 12 O 1.21501 * 120.00268 * 0.02562 * 11 10 9 13 13 C 1.47464 * 119.99798 * 179.73026 * 11 10 9 14 14 C 1.39837 * 120.06373 * 359.97438 * 13 11 10 15 15 C 1.37611 * 119.92958 * 179.74181 * 14 13 11 16 16 C 1.39274 * 120.06805 * 0.51967 * 15 14 13 17 17 N 1.39072 * 119.93686 * 179.74176 * 16 15 14 18 18 C 1.34776 * 120.00013 * 213.66986 * 17 16 15 19 19 O 1.21723 * 119.99925 * 5.27464 * 18 17 16 20 20 C 1.46191 * 119.99959 * 185.27627 * 18 17 16 21 21 H 1.08000 * 120.00168 * 0.02562 * 20 18 17 22 22 C 1.40119 * 120.00414 * 179.97438 * 20 18 17 23 23 N 1.30645 * 119.99782 * 0.02562 * 22 20 18 24 24 Si 1.86799 * 120.00572 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46879 * 60.00389 * 24 22 20 26 26 H 1.48499 * 109.47259 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47142 * 300.00322 * 24 22 20 28 28 C 1.39273 * 120.13151 * 359.75625 * 16 15 14 29 29 C 1.37605 * 120.07107 * 359.97438 * 28 16 15 30 30 C 1.37866 * 120.12576 * 0.25067 * 8 6 5 31 31 H 1.08000 * 120.06452 * 359.97438 * 4 3 2 32 32 H 1.07994 * 119.93880 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47072 * 59.99832 * 9 8 6 34 34 H 1.08998 * 109.47382 * 300.00246 * 9 8 6 35 35 H 1.07994 * 120.03754 * 359.97438 * 14 13 11 36 36 H 1.07998 * 119.97083 * 180.25636 * 15 14 13 37 37 H 0.97003 * 119.99540 * 33.66257 * 17 16 15 38 38 H 0.96994 * 120.00019 * 179.97438 * 23 22 20 39 39 H 1.08003 * 119.96517 * 179.97438 * 28 16 15 40 40 H 1.08006 * 120.03734 * 179.97438 * 29 28 16 41 41 H 1.07999 * 120.06802 * 179.73440 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -1.0024 0.6733 5 6 4.6479 -0.9970 0.6695 6 6 5.3381 0.0018 -0.0005 7 9 6.6891 0.0024 -0.0005 8 6 4.6471 0.9995 -0.6702 9 6 5.4043 2.0819 -1.3956 10 8 4.4639 3.0000 -2.0128 11 6 4.9826 4.0328 -2.7059 12 8 6.1876 4.1623 -2.7924 13 6 4.0877 5.0021 -3.3647 14 6 2.7007 4.8506 -3.2716 15 6 1.8681 5.7598 -3.8830 16 6 2.4056 6.8239 -4.6031 17 7 1.5616 7.7382 -5.2244 18 6 1.9259 8.3069 -6.3908 19 8 2.9472 7.9503 -6.9489 20 6 1.0945 9.3519 -6.9855 21 1 0.1885 9.6686 -6.4901 22 6 1.4734 9.9436 -8.1978 23 7 2.5695 9.5610 -8.7969 24 14 0.4106 11.2785 -8.9581 25 1 0.3056 12.4231 -8.0178 26 1 1.0258 11.7367 -10.2296 27 1 -0.9445 10.7365 -9.2316 28 6 3.7866 6.9742 -4.7024 29 6 4.6243 6.0715 -4.0885 30 6 3.2685 1.0068 -0.6692 31 1 2.7331 -1.7805 1.1959 32 1 5.1913 -1.7721 1.1893 33 1 6.0317 1.6328 -2.1655 34 1 6.0306 2.6243 -0.6873 35 1 2.2833 4.0231 -2.7173 36 1 0.7968 5.6457 -3.8081 37 1 0.7108 7.9664 -4.8183 38 1 2.8316 9.9703 -9.6363 39 1 4.2005 7.8002 -5.2618 40 1 5.6952 6.1883 -4.1662 41 1 2.7311 1.7870 -1.1877 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011312811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:14 Heat of formation + Delta-G solvation = -103.496060 kcal Electronic energy + Delta-G solvation = -30045.257292 eV Core-core repulsion = 25383.081200 eV Total energy + Delta-G solvation = -4662.176092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.100 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -50.06015 -41.75078 -40.81736 -40.31919 -38.73912 -37.75417 -37.31598 -35.43455 -34.58328 -33.51686 -32.05569 -31.98539 -31.16711 -28.61851 -27.77587 -25.20386 -24.78491 -23.95819 -23.19832 -22.29673 -21.50295 -19.82277 -19.58634 -19.00036 -18.58354 -18.24687 -17.73321 -17.66845 -17.57332 -17.34898 -16.70484 -16.13908 -15.78783 -15.69434 -15.35600 -15.07470 -15.01418 -14.82028 -14.79896 -14.73548 -14.68865 -14.56814 -14.23841 -13.93929 -13.64363 -13.54572 -13.52168 -13.15924 -12.99253 -12.98292 -12.77600 -12.73803 -12.21563 -12.13575 -12.08803 -12.00485 -11.68785 -11.17544 -10.91090 -10.13274 -10.09527 -9.85801 -9.77704 -8.95710 -8.40154 -6.98389 -0.46608 -0.28187 0.08835 0.45060 1.38841 1.40366 1.41581 1.50518 1.55242 1.60023 1.74128 2.19177 2.34624 2.69189 2.75490 2.77536 2.88146 3.08063 3.30142 3.52824 3.62695 3.79297 3.89613 3.99492 4.05337 4.09202 4.16862 4.35249 4.37037 4.47550 4.55642 4.65160 4.82658 4.95592 4.98683 5.02413 5.11724 5.17232 5.23232 5.28580 5.38306 5.40463 5.62581 5.67472 5.76520 6.11477 6.23778 6.43086 6.65613 6.74845 7.24531 8.28403 8.52658 Molecular weight = 368.10amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.001686 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.916073 B =16606.180530 C =18069.308845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.279 3.721 3 C -0.042 4.042 4 C -0.023 4.023 5 C -0.138 4.138 6 C 0.133 3.867 7 F -0.135 7.135 8 C -0.133 4.133 9 C 0.108 3.892 10 O -0.341 6.341 11 C 0.529 3.471 12 O -0.539 6.539 13 C -0.183 4.183 14 C -0.019 4.019 15 C -0.178 4.178 16 C 0.209 3.791 17 N -0.687 5.687 18 C 0.526 3.474 19 O -0.603 6.603 20 C -0.562 4.562 21 H 0.097 0.903 22 C 0.029 3.971 23 N -0.811 5.811 24 Si 1.000 3.000 25 H -0.253 1.253 26 H -0.276 1.276 27 H -0.253 1.253 28 C -0.170 4.170 29 C -0.033 4.033 30 C -0.024 4.024 31 H 0.174 0.826 32 H 0.180 0.820 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.172 0.828 36 H 0.160 0.840 37 H 0.413 0.587 38 H 0.278 0.722 39 H 0.106 0.894 40 H 0.130 0.870 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.157 -20.264 21.031 29.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.035 4.035 3 C -0.046 4.046 4 C -0.043 4.043 5 C -0.157 4.157 6 C 0.113 3.887 7 F -0.113 7.113 8 C -0.134 4.134 9 C 0.035 3.965 10 O -0.258 6.258 11 C 0.377 3.623 12 O -0.430 6.430 13 C -0.186 4.186 14 C -0.037 4.037 15 C -0.199 4.199 16 C 0.109 3.891 17 N -0.330 5.330 18 C 0.334 3.666 19 O -0.488 6.488 20 C -0.597 4.597 21 H 0.115 0.885 22 C -0.187 4.187 23 N -0.440 5.440 24 Si 0.819 3.181 25 H -0.177 1.177 26 H -0.200 1.200 27 H -0.176 1.176 28 C -0.191 4.191 29 C -0.052 4.052 30 C -0.044 4.044 31 H 0.192 0.808 32 H 0.197 0.803 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.189 0.811 36 H 0.178 0.822 37 H 0.250 0.750 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.148 0.852 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.606 -20.406 20.419 28.874 hybrid contribution 0.518 1.072 -0.708 1.385 sum 1.124 -19.334 19.711 27.633 Atomic orbital electron populations 1.81343 1.13440 1.08944 1.09720 1.25704 0.92551 0.92684 0.92591 1.16009 0.83645 0.99684 1.05243 1.21389 0.93091 0.95943 0.93904 1.21319 0.94308 0.99033 1.01005 1.17808 0.76806 0.95875 0.98218 1.91552 1.29131 1.96114 1.94546 1.19348 0.94374 0.97039 1.02658 1.21661 0.89841 0.88057 0.96977 1.86430 1.40485 1.36138 1.62716 1.20965 0.86680 0.79478 0.75176 1.90826 1.17217 1.74804 1.60141 1.18879 0.93782 0.98179 1.07732 1.21415 0.90531 0.97425 0.94341 1.21169 1.01823 0.93640 1.03243 1.18542 0.90462 0.89562 0.90573 1.43797 1.22025 1.43503 1.23705 1.18771 0.86199 0.82617 0.79041 1.90623 1.29114 1.65827 1.63234 1.21405 1.10486 1.19819 1.07994 0.88527 1.27011 0.95935 0.99269 0.96532 1.70131 1.21946 1.37186 1.14701 0.85014 0.78336 0.77174 0.77529 1.17726 1.20049 1.17645 1.21035 0.93155 1.01967 1.02948 1.20995 1.00018 0.91676 0.92471 1.20941 0.92169 0.96690 0.94638 0.80825 0.80308 0.89202 0.88911 0.81101 0.82239 0.74994 0.91149 0.87605 0.85229 0.82952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.49 18.54 19.00 0.35 -9.14 16 2 C 0.28 4.01 15.33 88.33 1.35 5.37 16 3 C -0.04 -0.38 5.73 -21.33 -0.12 -0.50 16 4 C -0.02 -0.09 9.75 22.53 0.22 0.13 16 5 C -0.14 -0.55 10.01 22.27 0.22 -0.33 16 6 C 0.13 1.29 7.25 22.46 0.16 1.45 16 7 F -0.14 -1.70 16.79 44.97 0.75 -0.94 16 8 C -0.13 -1.61 5.88 -19.86 -0.12 -1.72 16 9 C 0.11 1.79 5.44 71.23 0.39 2.18 16 10 O -0.34 -6.95 7.92 -56.68 -0.45 -7.40 16 11 C 0.53 14.63 7.89 70.25 0.55 15.18 16 12 O -0.54 -17.72 16.13 19.83 0.32 -17.40 16 13 C -0.18 -5.48 5.88 -20.07 -0.12 -5.60 16 14 C -0.02 -0.46 9.60 22.51 0.22 -0.25 16 15 C -0.18 -5.08 9.94 22.37 0.22 -4.86 16 16 C 0.21 8.10 6.27 38.49 0.24 8.34 16 17 N -0.69 -29.03 5.30 -307.51 -1.63 -30.66 16 18 C 0.53 28.70 7.46 86.31 0.64 29.34 16 19 O -0.60 -38.08 12.69 -4.42 -0.06 -38.14 16 20 C -0.56 -29.69 9.54 24.79 0.24 -29.45 16 21 H 0.10 4.46 7.85 -2.91 -0.02 4.44 16 22 C 0.03 1.55 5.50 85.33 0.47 2.02 16 23 N -0.81 -47.36 11.83 21.85 0.26 -47.10 16 24 Si 1.00 38.54 29.56 68.60 2.03 40.57 16 25 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 26 H -0.28 -10.38 7.11 99.48 0.71 -9.67 16 27 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 28 C -0.17 -7.20 8.62 22.37 0.19 -7.00 16 29 C -0.03 -1.17 9.58 22.51 0.22 -0.96 16 30 C -0.02 -0.26 9.09 22.53 0.20 -0.06 16 31 H 0.17 -0.28 8.06 -2.91 -0.02 -0.30 16 32 H 0.18 -0.25 8.06 -2.91 -0.02 -0.27 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.17 2.88 7.60 -2.91 -0.02 2.86 16 36 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 37 H 0.41 14.16 8.79 -92.71 -0.81 13.35 16 38 H 0.28 14.78 8.29 -92.71 -0.77 14.01 16 39 H 0.11 5.35 6.41 -2.91 -0.02 5.33 16 40 H 0.13 4.59 7.64 -2.91 -0.02 4.56 16 41 H 0.15 1.70 6.98 -2.91 -0.02 1.68 16 Total: -1.00 -78.41 382.84 7.09 -71.32 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.32 Total: 25.62 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 5.19 Total: 13.27 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -1.02 Total: -86.90 kcal Atomic # 8 Polarization: -62.75 SS G_CDS: -0.19 Total: -62.94 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.75 Total: -0.94 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -78.41 7.09 -71.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011312811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.179 kcal (2) G-P(sol) polarization free energy of solvation -78.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds