Wall clock time and date at job start Tue Mar 31 2020 07:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30014 * 119.99914 * 2 1 4 4 O 1.41605 * 119.99870 * 0.02562 * 3 2 1 5 5 C 1.42899 * 113.99874 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46785 * 179.97438 * 5 4 3 7 7 C 1.38249 * 120.00221 * 359.97438 * 6 5 4 8 8 C 1.38223 * 120.03700 * 180.02562 * 7 6 5 9 9 C 1.38252 * 120.04165 * 359.95267 * 8 7 6 10 10 C 1.38308 * 119.99652 * 0.04707 * 9 8 7 11 11 Cl 1.73597 * 120.01614 * 179.97438 * 10 9 8 12 12 C 1.38306 * 119.99603 * 179.72698 * 6 5 4 13 13 Cl 1.73590 * 120.02263 * 359.97438 * 12 6 5 14 14 C 1.46226 * 120.00109 * 179.97438 * 2 1 3 15 15 C 1.37739 * 125.08619 * 179.72146 * 14 2 1 16 16 C 1.35688 * 114.86400 * 179.78350 * 15 14 2 17 17 C 1.38790 * 114.54842 * 0.50806 * 16 15 14 18 18 C 1.39463 * 125.22764 * 179.76228 * 17 16 15 19 19 H 1.08002 * 120.00028 * 359.97438 * 18 17 16 20 20 C 1.40285 * 120.00087 * 179.97438 * 18 17 16 21 21 N 1.30714 * 119.99835 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99900 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47364 * 60.00329 * 22 20 18 24 24 H 1.48506 * 109.46721 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47141 * 299.99980 * 22 20 18 26 26 S 1.75810 * 125.08960 * 0.02845 * 14 2 1 27 27 H 1.08997 * 109.47041 * 90.00459 * 1 2 3 28 28 H 1.09010 * 109.46752 * 209.99845 * 1 2 3 29 29 H 1.08997 * 109.47313 * 329.99836 * 1 2 3 30 30 H 1.09005 * 109.47016 * 299.99609 * 5 4 3 31 31 H 1.08997 * 109.47442 * 60.00087 * 5 4 3 32 32 H 1.07998 * 119.98044 * 0.02562 * 7 6 5 33 33 H 1.08007 * 119.98018 * 179.97438 * 8 7 6 34 34 H 1.07998 * 120.00192 * 180.02562 * 9 8 7 35 35 H 1.07998 * 122.56590 * 359.97370 * 15 14 2 36 36 H 1.08000 * 122.72560 * 180.22754 * 16 15 14 37 37 H 0.97001 * 120.00037 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1570 1.1260 0.0000 4 8 1.4490 2.3523 0.0005 5 6 2.2889 3.5084 -0.0001 6 6 1.4346 4.7498 -0.0001 7 6 0.0564 4.6406 0.0000 8 6 -0.7278 5.7788 -0.0005 9 6 -0.1350 7.0278 -0.0001 10 6 1.2436 7.1389 -0.0002 11 17 1.9885 8.7069 -0.0003 12 6 2.0294 5.9984 0.0051 13 17 3.7598 6.1362 0.0121 14 6 2.2381 -1.2663 0.0006 15 6 3.6101 -1.3884 -0.0049 16 6 4.0693 -2.6652 0.0015 17 6 3.0765 -3.6351 0.0013 18 6 3.2971 -5.0121 0.0024 19 1 4.3060 -5.3974 0.0032 20 6 2.2084 -5.8969 0.0026 21 7 0.9873 -5.4306 0.0022 22 14 2.5040 -7.7414 0.0034 23 1 3.2732 -8.1190 1.2161 24 1 1.1997 -8.4516 0.0028 25 1 3.2737 -8.1199 -1.2089 26 16 1.4977 -2.8609 0.0006 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 2.9188 3.5003 0.8895 31 1 2.9175 3.5004 -0.8905 32 1 -0.4076 3.6654 0.0004 33 1 -1.8044 5.6924 -0.0009 34 1 -0.7484 7.9167 -0.0001 35 1 4.2698 -0.5334 -0.0105 36 1 5.1218 -2.9072 0.0020 37 1 0.2345 -6.0424 0.0019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012350992.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:17 Heat of formation + Delta-G solvation = 23.872506 kcal Electronic energy + Delta-G solvation = -23866.772299 eV Core-core repulsion = 19981.057057 eV Total energy + Delta-G solvation = -3885.715241 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 369.010 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.83385 -37.20460 -36.75966 -36.70163 -36.03339 -34.73727 -33.56479 -31.75509 -30.84728 -29.00295 -27.74025 -26.17922 -25.06581 -23.02304 -22.44177 -21.71048 -19.55205 -18.49441 -17.79053 -17.36626 -16.26880 -15.97368 -15.57871 -15.37984 -15.06993 -14.65040 -14.44961 -14.34729 -14.09086 -13.73800 -13.18671 -13.04105 -12.72286 -12.41609 -12.13947 -12.12253 -12.03907 -11.94641 -11.77575 -11.68630 -11.39136 -11.25521 -11.18731 -11.01417 -10.92689 -10.84806 -10.62480 -10.07119 -9.85884 -9.17027 -9.12880 -8.98384 -8.91405 -8.79686 -7.33490 -7.29352 -6.91180 -4.72868 0.69798 0.79236 1.56959 1.95643 1.98316 2.75952 2.78655 2.82700 3.08598 3.17783 3.34721 3.50840 3.61700 3.99362 4.18433 4.40869 4.61006 4.81153 4.84388 4.96065 5.07409 5.35165 5.48558 5.59475 5.64089 5.70549 5.78097 5.92585 6.03783 6.04496 6.27464 6.34435 6.49667 6.60811 6.76396 6.97056 7.24358 7.33868 7.58946 7.78396 7.89674 8.25602 8.31544 8.57068 9.51679 Molecular weight = 369.01amu Principal moments of inertia in cm(-1) A = 0.029682 B = 0.001660 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.110863 B =16862.489171 C =17785.140287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.256 3.744 3 N -0.404 5.404 4 O -0.265 6.265 5 C 0.124 3.876 6 C -0.057 4.057 7 C -0.083 4.083 8 C -0.102 4.102 9 C -0.106 4.106 10 C -0.030 4.030 11 Cl -0.053 7.053 12 C -0.031 4.031 13 Cl -0.045 7.045 14 C -0.393 4.393 15 C -0.003 4.003 16 C -0.341 4.341 17 C 0.038 3.962 18 C -0.358 4.358 19 H 0.100 0.900 20 C 0.047 3.953 21 N -0.761 5.761 22 Si 0.940 3.060 23 H -0.258 1.258 24 H -0.271 1.271 25 H -0.258 1.258 26 S 0.165 5.835 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 15.254 -0.027 15.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.076 3.924 3 N -0.163 5.163 4 O -0.273 6.273 5 C 0.047 3.953 6 C -0.059 4.059 7 C -0.102 4.102 8 C -0.121 4.121 9 C -0.125 4.125 10 C -0.058 4.058 11 Cl -0.024 7.024 12 C -0.058 4.058 13 Cl -0.016 7.016 14 C -0.511 4.511 15 C -0.035 4.035 16 C -0.365 4.365 17 C -0.085 4.085 18 C -0.394 4.394 19 H 0.118 0.882 20 C -0.177 4.177 21 N -0.388 5.388 22 Si 0.762 3.238 23 H -0.182 1.182 24 H -0.196 1.196 25 H -0.183 1.183 26 S 0.424 5.576 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.165 0.835 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.706 15.533 -0.025 16.547 hybrid contribution 1.192 -0.072 -0.012 1.194 sum -4.514 15.460 -0.037 16.106 Atomic orbital electron populations 1.21225 0.93498 1.02838 1.02731 1.22211 0.92582 0.90056 0.87561 1.77458 1.20797 0.89362 1.28721 1.89524 1.30983 1.11905 1.94878 1.20731 0.91369 0.81272 1.01952 1.19665 0.94853 0.92364 0.99029 1.21197 0.92102 1.00053 0.96801 1.21276 1.00777 0.91339 0.98679 1.21040 0.91643 0.99101 1.00738 1.20653 0.92984 0.85807 1.06309 1.98384 1.82534 1.24683 1.96809 1.20452 0.85797 0.92731 1.06869 1.98394 1.08416 1.98233 1.96579 1.22403 0.96559 0.95324 1.36836 1.19881 0.93267 0.96147 0.94166 1.19752 0.97824 0.91772 1.27190 1.22106 0.95197 0.96395 0.94758 1.19374 0.95237 0.89514 1.35312 0.88173 1.26381 0.94178 1.04155 0.92953 1.68746 1.00086 1.39350 1.30571 0.85778 0.79207 0.78231 0.80571 1.18250 1.19595 1.18256 1.84323 1.06883 0.90708 1.75707 0.90733 0.90730 0.91466 0.91118 0.91114 0.83524 0.84278 0.84124 0.87892 0.87642 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.52 36.01 0.34 -2.22 16 2 C 0.26 5.48 7.11 -80.16 -0.57 4.91 16 3 N -0.40 -8.61 10.99 34.87 0.38 -8.22 16 4 O -0.27 -4.86 8.65 -11.47 -0.10 -4.96 16 5 C 0.12 1.92 5.76 36.01 0.21 2.13 16 6 C -0.06 -0.75 5.88 -104.59 -0.62 -1.36 16 7 C -0.08 -0.97 9.38 -39.58 -0.37 -1.34 16 8 C -0.10 -0.93 10.04 -39.58 -0.40 -1.32 16 9 C -0.11 -0.96 9.83 -39.55 -0.39 -1.35 16 10 C -0.03 -0.32 6.32 -39.46 -0.25 -0.57 16 11 Cl -0.05 -0.53 27.96 -51.86 -1.45 -1.98 16 12 C -0.03 -0.38 6.32 -39.46 -0.25 -0.63 16 13 Cl -0.05 -0.55 26.99 -51.86 -1.40 -1.95 16 14 C -0.39 -9.20 6.42 -36.56 -0.23 -9.43 16 15 C 0.00 -0.07 9.84 -40.68 -0.40 -0.47 16 16 C -0.34 -8.23 10.15 -40.29 -0.41 -8.64 16 17 C 0.04 0.93 6.18 -38.92 -0.24 0.69 16 18 C -0.36 -8.29 9.27 -38.36 -0.36 -8.64 16 19 H 0.10 2.16 7.85 -52.49 -0.41 1.75 16 20 C 0.05 1.00 5.50 -17.26 -0.09 0.91 16 21 N -0.76 -16.62 10.62 55.57 0.59 -16.03 16 22 Si 0.94 15.76 29.56 -169.99 -5.03 10.74 16 23 H -0.26 -4.31 7.11 56.52 0.40 -3.91 16 24 H -0.27 -4.41 7.11 56.52 0.40 -4.01 16 25 H -0.26 -4.31 7.11 56.52 0.40 -3.91 16 26 S 0.16 3.84 19.11 -107.50 -2.05 1.79 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.31 7.36 -51.92 -0.38 0.92 16 29 H 0.07 1.10 7.36 -51.93 -0.38 0.72 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.15 1.75 7.00 -52.49 -0.37 1.38 16 33 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.10 2.36 7.99 -52.49 -0.42 1.94 16 36 H 0.11 2.39 8.06 -52.49 -0.42 1.96 16 37 H 0.30 5.89 8.29 -40.82 -0.34 5.55 16 LS Contribution 367.18 15.07 5.53 5.53 Total: -1.00 -25.70 367.18 -11.18 -36.88 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.63 Total: 5.52 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -4.03 Total: -27.33 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.97 Total: -24.25 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.10 Total: -4.96 kcal Atomic # 14 Polarization: 15.76 SS G_CDS: -5.03 Total: 10.74 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -2.05 Total: 1.79 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -2.85 Total: -3.93 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -25.70 -11.18 -36.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012350992.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.754 kcal (2) G-P(sol) polarization free energy of solvation -25.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds