Wall clock time and date at job start Tue Mar 31 2020 07:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86800 * 119.99870 * 2 1 4 4 H 1.48498 * 109.46981 * 274.98466 * 3 2 1 5 5 H 1.48501 * 109.47068 * 34.98676 * 3 2 1 6 6 H 1.48498 * 109.46883 * 154.98563 * 3 2 1 7 7 C 1.39907 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99888 * 147.61344 * 7 2 1 9 9 C 1.41154 * 119.99909 * 327.61426 * 7 2 1 10 10 C 1.40864 * 120.16499 * 157.95205 * 9 7 2 11 11 C 1.36370 * 119.83184 * 180.02562 * 10 9 7 12 12 C 1.39489 * 120.16787 * 359.97438 * 11 10 9 13 13 N 1.39232 * 119.83485 * 179.97438 * 12 11 10 14 14 C 1.34780 * 120.00237 * 37.75447 * 13 12 11 15 15 O 1.21283 * 119.99786 * 356.70929 * 14 13 12 16 16 C 1.50700 * 120.00355 * 176.69927 * 14 13 12 17 17 C 1.52992 * 109.47317 * 180.02562 * 16 14 13 18 18 N 1.46502 * 109.47261 * 180.02562 * 17 16 14 19 19 C 1.35800 * 119.81232 * 270.01940 * 18 17 16 20 20 N 1.29986 * 121.86412 * 179.42701 * 19 18 17 21 21 C 1.35029 * 121.70000 * 0.86070 * 20 19 18 22 22 S 1.75874 * 130.81801 * 179.10428 * 21 20 19 23 23 C 1.75342 * 92.15542 * 180.02562 * 22 21 20 24 24 C 1.32030 * 111.25749 * 0.02562 * 23 22 21 25 25 C 1.39194 * 119.55854 * 359.40436 * 21 20 19 26 26 C 1.34742 * 119.81689 * 89.99609 * 18 17 16 27 27 O 1.21897 * 120.64593 * 0.05011 * 26 18 17 28 28 C 1.39475 * 120.32985 * 0.25339 * 12 11 10 29 29 C 1.36376 * 120.17059 * 359.48816 * 28 12 11 30 30 H 0.96997 * 120.00090 * 0.02562 * 1 2 3 31 31 H 1.08007 * 120.08456 * 0.02562 * 10 9 7 32 32 H 1.07998 * 119.92080 * 179.97438 * 11 10 9 33 33 H 0.96995 * 120.00377 * 217.76404 * 13 12 11 34 34 H 1.08997 * 109.46653 * 60.00161 * 16 14 13 35 35 H 1.09000 * 109.47104 * 300.00775 * 16 14 13 36 36 H 1.09002 * 109.47348 * 59.99758 * 17 16 14 37 37 H 1.09000 * 109.47134 * 300.00105 * 17 16 14 38 38 H 1.07996 * 119.06572 * 359.97438 * 19 18 17 39 39 H 1.08004 * 124.37316 * 179.97438 * 23 22 21 40 40 H 1.08000 * 122.60215 * 180.02562 * 24 23 22 41 41 H 1.07996 * 119.91795 * 179.74248 * 28 12 11 42 42 H 1.08007 * 120.08914 * 180.25852 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3848 2.1072 -1.3948 5 1 1.4967 2.6199 0.8028 6 1 3.5889 1.4120 0.5920 7 6 2.0083 -1.2116 -0.0005 8 1 2.9623 -1.2841 -0.5016 9 6 1.4672 -2.3393 0.6537 10 6 1.8853 -3.6352 0.2931 11 6 1.3577 -4.7199 0.9293 12 6 0.4066 -4.5485 1.9352 13 7 -0.1279 -5.6609 2.5798 14 6 0.6570 -6.7208 2.8573 15 8 1.8137 -6.7307 2.4928 16 6 0.0975 -7.8935 3.6207 17 6 1.1875 -8.9519 3.8006 18 7 0.6434 -10.0922 4.5422 19 6 0.7155 -10.1122 5.8981 20 7 0.2360 -11.0982 6.5963 21 6 -0.3457 -12.1662 6.0096 22 16 -1.0454 -13.6215 6.7065 23 6 -1.4663 -14.2554 5.1268 24 6 -1.1019 -13.4265 4.1658 25 6 -0.4499 -12.2155 4.6224 26 6 0.0738 -11.1150 3.8751 27 8 0.0068 -11.1025 2.6581 28 6 -0.0159 -3.2688 2.2945 29 6 0.5066 -2.1743 1.6709 30 1 -0.4850 0.8400 -0.0004 31 1 2.6220 -3.7694 -0.4853 32 1 1.6769 -5.7141 0.6537 33 1 -1.0652 -5.6731 2.8291 34 1 -0.7378 -8.3222 3.0670 35 1 -0.2485 -7.5588 4.5986 36 1 2.0226 -8.5229 4.3545 37 1 1.5338 -9.2867 2.8228 38 1 1.1765 -9.2813 6.4113 39 1 -1.9591 -15.2020 4.9611 40 1 -1.2737 -13.6362 3.1204 41 1 -0.7556 -3.1441 3.0713 42 1 0.1816 -1.1837 1.9530 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012817539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:32 Heat of formation + Delta-G solvation = 11.836333 kcal Electronic energy + Delta-G solvation = -28460.749759 eV Core-core repulsion = 24304.362120 eV Total energy + Delta-G solvation = -4156.387639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 369.093 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.08090 -39.75850 -38.00103 -37.53912 -37.08466 -34.81093 -34.46439 -33.11841 -31.50382 -29.89623 -29.61599 -29.00331 -26.44783 -25.16511 -24.52480 -23.54883 -21.77416 -21.37664 -20.72041 -19.72035 -19.53371 -18.22183 -17.65267 -17.33433 -16.82032 -16.55740 -16.25398 -15.83820 -15.56000 -15.26854 -15.19713 -14.41655 -14.18824 -14.07740 -13.87902 -13.66893 -13.63119 -13.27703 -13.11379 -12.92349 -12.67756 -12.29115 -12.14188 -12.02087 -11.64992 -11.56196 -11.39176 -11.18689 -10.99311 -10.61920 -10.58135 -10.49830 -10.34324 -10.22122 -9.79837 -9.52773 -9.13609 -9.00382 -8.75633 -8.51738 -7.59919 -7.20479 -6.93542 -4.32049 -0.16911 0.70971 1.27381 1.43362 1.71288 2.00072 2.49872 2.90232 3.02273 3.05274 3.08626 3.11347 3.28620 3.64436 3.66546 3.85710 4.00179 4.31317 4.44501 4.50173 4.52368 4.57712 4.74618 4.97429 5.19066 5.20448 5.37298 5.51367 5.57269 5.63180 5.71586 5.83824 6.13064 6.13662 6.37815 6.70959 6.89224 6.95601 7.09138 7.18232 7.23421 7.42830 7.51468 7.62355 7.82589 7.97307 8.19434 8.21974 8.49822 8.66538 8.79381 8.94139 9.97462 Molecular weight = 369.09amu Principal moments of inertia in cm(-1) A = 0.034840 B = 0.001459 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.483559 B =19181.195712 C =19350.289210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.896 3.104 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.464 4.464 8 H 0.083 0.917 9 C 0.113 3.887 10 C -0.224 4.224 11 C -0.064 4.064 12 C -0.027 4.027 13 N -0.645 5.645 14 C 0.504 3.496 15 O -0.534 6.534 16 C -0.155 4.155 17 C 0.109 3.891 18 N -0.532 5.532 19 C 0.392 3.608 20 N -0.509 5.509 21 C 0.079 3.921 22 S 0.189 5.811 23 C -0.232 4.232 24 C -0.063 4.063 25 C -0.237 4.237 26 C 0.555 3.445 27 O -0.515 6.515 28 C -0.100 4.100 29 C -0.172 4.172 30 H 0.284 0.716 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.395 0.605 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.214 0.786 39 H 0.177 0.823 40 H 0.152 0.848 41 H 0.089 0.911 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.567 -21.242 14.503 26.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.101 0.899 9 C 0.110 3.890 10 C -0.244 4.244 11 C -0.084 4.084 12 C -0.119 4.119 13 N -0.287 5.287 14 C 0.290 3.710 15 O -0.412 6.412 16 C -0.197 4.197 17 C -0.013 4.013 18 N -0.252 5.252 19 C 0.102 3.898 20 N -0.231 5.231 21 C -0.154 4.154 22 S 0.452 5.548 23 C -0.366 4.366 24 C -0.092 4.092 25 C -0.255 4.255 26 C 0.349 3.651 27 O -0.390 6.390 28 C -0.120 4.120 29 C -0.191 4.191 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.228 0.772 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.230 0.770 39 H 0.194 0.806 40 H 0.170 0.830 41 H 0.107 0.893 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.276 -21.890 15.707 27.279 hybrid contribution -0.223 1.357 -2.056 2.474 sum -4.499 -20.533 13.650 25.063 Atomic orbital electron populations 1.69941 1.08107 1.29945 1.31081 1.25952 0.94367 1.01569 0.91503 0.86498 0.81522 0.80752 0.79259 1.19419 1.19861 1.18055 1.19531 1.05408 0.93753 1.30497 0.89943 1.17608 0.89662 0.91870 0.89841 1.20601 1.07113 0.92308 1.04398 1.20305 0.96324 0.98025 0.93722 1.17032 1.07635 0.84747 1.02450 1.42900 1.12023 1.15990 1.57792 1.20092 0.86425 0.83776 0.80743 1.90717 1.17410 1.80026 1.53001 1.21936 1.00206 0.95049 1.02470 1.21802 0.95960 0.83441 1.00059 1.46771 1.49860 1.20345 1.08186 1.25097 0.89159 0.95707 0.79854 1.67951 1.17967 1.01451 1.35765 1.24030 0.99411 0.98642 0.93303 1.84134 1.56098 1.08027 1.06571 1.25193 1.10481 1.05549 0.95393 1.20508 0.96787 0.90803 1.01137 1.20837 1.12250 0.99662 0.92744 1.16694 0.78852 0.81777 0.87759 1.90959 1.56835 1.78882 1.12325 1.20157 1.00603 0.91585 0.99693 1.20617 1.02598 0.96641 0.99286 0.90540 0.88708 0.87932 0.77184 0.88400 0.88498 0.87184 0.86856 0.76954 0.80578 0.83039 0.89284 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.09 11.78 55.55 0.65 -18.44 16 2 C 0.09 2.14 4.77 -17.34 -0.08 2.06 16 3 Si 0.90 17.90 29.66 -169.99 -5.04 12.85 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.46 -12.10 8.94 -37.85 -0.34 -12.44 16 8 H 0.08 2.08 8.02 -52.49 -0.42 1.66 16 9 C 0.11 2.98 5.57 -106.80 -0.60 2.38 16 10 C -0.22 -5.64 9.74 -39.26 -0.38 -6.02 16 11 C -0.06 -1.51 8.59 -39.79 -0.34 -1.85 16 12 C -0.03 -0.58 6.25 -83.57 -0.52 -1.10 16 13 N -0.64 -10.64 5.30 -9.74 -0.05 -10.69 16 14 C 0.50 7.78 7.64 -10.98 -0.08 7.70 16 15 O -0.53 -10.31 13.60 5.55 0.08 -10.23 16 16 C -0.16 -1.58 6.02 -27.89 -0.17 -1.74 16 17 C 0.11 1.07 4.65 -4.05 -0.02 1.05 16 18 N -0.53 -4.99 2.59 -120.43 -0.31 -5.30 16 19 C 0.39 2.79 11.48 -90.11 -1.03 1.76 16 20 N -0.51 -4.68 10.42 -12.59 -0.13 -4.81 16 21 C 0.08 0.78 7.70 -15.79 -0.12 0.66 16 22 S 0.19 1.38 23.24 -107.50 -2.50 -1.12 16 23 C -0.23 -1.57 11.04 28.81 0.32 -1.25 16 24 C -0.06 -0.58 10.31 -38.86 -0.40 -0.98 16 25 C -0.24 -2.63 6.08 -105.07 -0.64 -3.26 16 26 C 0.55 6.88 7.51 -14.45 -0.11 6.77 16 27 O -0.51 -8.03 16.68 5.01 0.08 -7.95 16 28 C -0.10 -2.22 9.90 -39.79 -0.39 -2.62 16 29 C -0.17 -4.29 8.74 -39.26 -0.34 -4.64 16 30 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 31 H 0.09 2.28 8.06 -52.48 -0.42 1.85 16 32 H 0.10 2.39 6.45 -52.49 -0.34 2.05 16 33 H 0.39 5.12 8.82 -40.82 -0.36 4.76 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.11 0.86 7.97 -51.93 -0.41 0.45 16 37 H 0.11 1.40 7.39 -51.93 -0.38 1.02 16 38 H 0.21 0.56 8.02 -52.49 -0.42 0.13 16 39 H 0.18 0.66 8.06 -52.48 -0.42 0.24 16 40 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.11 2.72 6.53 -52.48 -0.34 2.37 16 LS Contribution 379.51 15.07 5.72 5.72 Total: -1.00 -33.41 379.51 -11.11 -44.52 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.35 Total: 8.98 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -5.26 Total: -13.53 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.16 Total: -39.25 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.16 Total: -18.18 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.04 Total: 12.85 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.50 Total: -1.12 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.41 -11.11 -44.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012817539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.357 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds