Wall clock time and date at job start Tue Mar 31 2020 06:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47373 * 2 1 4 4 C 1.53002 * 109.47349 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47220 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47220 * 179.97438 * 5 4 3 7 7 N 1.46494 * 109.47221 * 180.02562 * 6 5 4 8 8 C 1.34783 * 120.00396 * 180.02562 * 7 6 5 9 9 O 1.21558 * 119.99423 * 0.02562 * 8 7 6 10 10 C 1.47838 * 120.00536 * 179.97438 * 8 7 6 11 11 C 1.39573 * 120.14815 * 179.97438 * 10 8 7 12 12 C 1.37958 * 119.85588 * 180.02562 * 11 10 8 13 13 C 1.38358 * 120.14626 * 0.02562 * 12 11 10 14 14 S 1.76197 * 119.85557 * 179.97438 * 13 12 11 15 15 O 1.42100 * 106.39925 * 336.45745 * 14 13 12 16 16 O 1.42103 * 106.39966 * 203.53861 * 14 13 12 17 17 N 1.65597 * 107.21750 * 89.99841 * 14 13 12 18 18 C 1.46506 * 120.00079 * 65.00357 * 17 14 13 19 19 C 1.50699 * 109.47214 * 164.72113 * 18 17 14 20 20 H 1.07997 * 119.99775 * 359.97438 * 19 18 17 21 21 C 1.37872 * 119.99959 * 179.97438 * 19 18 17 22 22 N 1.31519 * 120.00023 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00046 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46915 * 60.00523 * 23 21 19 25 25 H 1.48506 * 109.46921 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47393 * 300.00333 * 23 21 19 27 27 C 1.38363 * 120.28836 * 0.23419 * 13 12 11 28 28 C 1.37951 * 120.14604 * 359.48486 * 27 13 12 29 29 H 1.08999 * 109.47333 * 300.00435 * 1 2 3 30 30 H 1.09007 * 109.47142 * 60.00527 * 1 2 3 31 31 H 1.09000 * 109.47391 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47333 * 239.99564 * 2 1 3 33 33 H 1.09007 * 109.47142 * 119.99473 * 2 1 3 34 34 H 1.08999 * 109.47247 * 59.99512 * 3 2 1 35 35 H 1.08999 * 109.46818 * 299.99612 * 3 2 1 36 36 H 1.08999 * 109.47157 * 59.99686 * 4 3 2 37 37 H 1.08999 * 109.47030 * 299.99711 * 4 3 2 38 38 H 1.09008 * 109.47312 * 60.00459 * 5 4 3 39 39 H 1.09002 * 109.47753 * 300.00348 * 5 4 3 40 40 H 1.08999 * 109.47157 * 60.00223 * 6 5 4 41 41 H 1.08999 * 109.47030 * 300.00247 * 6 5 4 42 42 H 0.97002 * 120.00608 * 359.97438 * 7 6 5 43 43 H 1.08007 * 120.07096 * 0.02562 * 11 10 8 44 44 H 1.08000 * 119.92453 * 180.02562 * 12 11 10 45 45 H 0.97005 * 120.00050 * 244.72378 * 17 14 13 46 46 H 1.08999 * 109.46682 * 284.72550 * 18 17 14 47 47 H 1.09000 * 109.47243 * 44.71866 * 18 17 14 48 48 H 0.97001 * 120.00013 * 179.97438 * 22 21 19 49 49 H 1.07996 * 119.92369 * 179.74857 * 27 13 12 50 50 H 1.08005 * 120.07562 * 180.25917 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8848 0.0013 7 7 6.0984 4.2660 0.0013 8 6 7.4235 4.5123 0.0018 9 8 8.2134 3.5884 0.0018 10 6 7.9163 5.9062 0.0012 11 6 9.2879 6.1647 0.0023 12 6 9.7412 7.4677 0.0023 13 6 8.8395 8.5170 0.0018 14 16 9.4268 10.1782 0.0025 15 8 10.7384 10.1398 0.5479 16 8 8.3819 10.9730 0.5462 17 7 9.5915 10.6406 -1.5791 18 6 8.4096 10.7456 -2.4385 19 6 8.7588 11.5251 -3.6800 20 1 9.7609 11.9046 -3.8152 21 6 7.7992 11.7536 -4.6432 22 7 6.5789 11.2918 -4.4783 23 14 8.2320 12.7204 -6.1819 24 1 9.3179 12.0224 -6.9160 25 1 7.0339 12.8268 -7.0529 26 1 8.6879 14.0810 -5.7998 27 6 7.4785 8.2677 0.0061 28 6 7.0121 6.9694 0.0003 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.6767 1.9562 -0.8900 36 1 3.9337 0.9284 -0.8891 37 1 3.9329 0.9288 0.8909 38 1 3.7164 3.3993 0.8896 39 1 3.7171 3.3983 -0.8904 40 1 5.9741 2.3704 -0.8880 41 1 5.9726 2.3716 0.8919 42 1 5.4681 5.0034 0.0002 43 1 9.9929 5.3464 0.0032 44 1 10.8023 7.6690 0.0027 45 1 10.4700 10.8458 -1.9355 46 1 8.0742 9.7471 -2.7186 47 1 7.6129 11.2585 -1.8995 48 1 5.9036 11.4530 -5.1558 49 1 6.7799 9.0912 0.0098 50 1 5.9494 6.7761 -0.0005 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012934530.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:02 Heat of formation + Delta-G solvation = -118.295327 kcal Electronic energy + Delta-G solvation = -29733.359631 eV Core-core repulsion = 25465.279146 eV Total energy + Delta-G solvation = -4268.080485 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.160 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.41840 -38.51082 -37.10190 -36.81207 -35.42827 -35.28726 -34.69638 -32.88207 -32.21159 -31.47015 -31.11195 -28.48136 -26.80140 -25.13770 -23.68337 -22.82033 -22.50182 -21.80283 -21.47660 -20.69904 -19.17417 -18.33216 -17.58732 -17.11328 -16.57810 -16.51872 -15.97560 -15.62007 -15.54532 -15.18930 -14.89631 -14.63214 -14.48557 -14.43375 -14.09468 -13.71119 -13.60713 -13.44625 -13.39270 -13.01259 -12.86174 -12.68267 -12.57796 -12.17420 -12.04242 -11.97880 -11.87790 -11.69545 -11.60848 -11.40185 -11.32076 -11.26105 -11.09725 -10.97183 -10.94073 -10.84796 -10.74434 -10.18985 -10.15584 -9.56480 -9.51261 -9.31621 -9.13656 -8.96172 -8.30112 -6.23176 -4.27760 0.29419 0.90054 1.22950 2.51072 2.80227 3.23990 3.28536 3.30535 3.47509 3.70177 4.16768 4.20626 4.30491 4.36553 4.41222 4.48057 4.55532 4.65375 4.75134 4.77727 4.88904 4.90729 5.00868 5.14098 5.17810 5.18626 5.30600 5.32833 5.35864 5.40220 5.46326 5.48800 5.55851 5.64846 5.65045 5.77629 5.84401 5.88781 5.92849 5.94500 6.03185 6.04782 6.11358 6.35583 6.66533 7.15013 7.20601 7.26403 7.72092 7.74652 7.89083 8.11092 8.75899 9.37457 10.87123 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.008520 B = 0.001890 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3285.433558 B =14811.645838 C =17078.620895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.117 4.117 5 C -0.134 4.134 6 C 0.119 3.881 7 N -0.727 5.727 8 C 0.559 3.441 9 O -0.533 6.533 10 C -0.091 4.091 11 C -0.085 4.085 12 C -0.027 4.027 13 C -0.646 4.646 14 S 2.689 3.311 15 O -0.976 6.976 16 O -0.958 6.958 17 N -1.101 6.101 18 C 0.245 3.755 19 C -0.531 4.531 20 H 0.066 0.934 21 C 0.062 3.938 22 N -0.891 5.891 23 Si 0.904 3.096 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.274 1.274 27 C -0.019 4.019 28 C -0.109 4.109 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.403 0.597 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.412 0.588 46 H 0.022 0.978 47 H 0.040 0.960 48 H 0.266 0.734 49 H 0.151 0.849 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.592 -18.871 9.605 22.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.155 4.155 5 C -0.172 4.172 6 C -0.005 4.005 7 N -0.379 5.379 8 C 0.346 3.654 9 O -0.410 6.410 10 C -0.095 4.095 11 C -0.105 4.105 12 C -0.046 4.046 13 C -0.730 4.730 14 S 2.776 3.224 15 O -0.966 6.966 16 O -0.948 6.948 17 N -0.864 5.864 18 C 0.122 3.878 19 C -0.571 4.571 20 H 0.084 0.916 21 C -0.141 4.141 22 N -0.528 5.528 23 Si 0.731 3.269 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.038 4.038 28 C -0.128 4.128 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.239 0.761 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.247 0.753 46 H 0.040 0.960 47 H 0.058 0.942 48 H 0.076 0.924 49 H 0.168 0.832 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.267 -19.145 10.328 22.935 hybrid contribution -0.179 0.216 -1.452 1.479 sum -7.445 -18.929 8.876 22.193 Atomic orbital electron populations 1.21783 0.95883 1.01602 1.01872 1.21538 0.95897 0.96883 1.02041 1.21622 0.94983 0.96915 1.02301 1.21507 0.95674 0.95682 1.02621 1.21838 0.93877 0.98310 1.03144 1.21415 0.93918 0.82472 1.02673 1.45941 1.06984 1.09388 1.75611 1.18310 0.82292 0.88651 0.76172 1.90777 1.55366 1.45620 1.49243 1.20159 0.94963 0.92539 1.01798 1.21334 0.94407 0.97322 0.97389 1.20933 0.99847 0.91401 0.92403 1.31527 1.02526 1.25584 1.13399 1.01998 0.73273 0.73678 0.73498 1.93539 1.38141 1.87206 1.77713 1.93576 1.58414 1.65500 1.77342 1.55440 1.17890 1.82791 1.30249 1.19114 0.81624 0.97284 0.89769 1.21151 0.97544 1.35401 1.02960 0.91579 1.24963 0.94799 0.95753 0.98627 1.69918 1.02481 1.45112 1.35331 0.86461 0.77854 0.80434 0.82110 1.20077 1.21118 1.19976 1.20977 0.93881 0.97768 0.91221 1.21357 0.99274 0.92356 0.99822 0.92759 0.92700 0.92826 0.92010 0.92063 0.91901 0.91811 0.91543 0.91612 0.91094 0.90940 0.91196 0.91279 0.76119 0.83916 0.83528 0.75321 0.95992 0.94239 0.92387 0.83179 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.15 0.37 -0.39 16 2 C -0.13 -0.64 5.93 -26.74 -0.16 -0.80 16 3 C -0.12 -0.62 5.21 -26.73 -0.14 -0.76 16 4 C -0.12 -0.62 5.21 -26.73 -0.14 -0.75 16 5 C -0.13 -0.76 5.33 -26.73 -0.14 -0.90 16 6 C 0.12 0.96 5.67 -4.04 -0.02 0.93 16 7 N -0.73 -6.85 5.51 -61.25 -0.34 -7.18 16 8 C 0.56 7.20 7.77 -12.33 -0.10 7.11 16 9 O -0.53 -8.45 16.35 5.31 0.09 -8.36 16 10 C -0.09 -1.20 5.87 -104.97 -0.62 -1.82 16 11 C -0.08 -1.15 9.60 -39.19 -0.38 -1.53 16 12 C -0.03 -0.38 9.50 -39.64 -0.38 -0.76 16 13 C -0.65 -10.12 5.95 -39.49 -0.24 -10.36 16 14 S 2.69 47.61 5.74 -107.50 -0.62 47.00 16 15 O -0.98 -18.06 17.27 -57.17 -0.99 -19.04 16 16 O -0.96 -19.50 16.73 -57.17 -0.96 -20.45 16 17 N -1.10 -21.24 5.99 -11.65 -0.07 -21.31 16 18 C 0.25 5.79 5.98 -5.19 -0.03 5.76 16 19 C -0.53 -13.81 9.27 -34.44 -0.32 -14.12 16 20 H 0.07 1.64 7.65 -52.49 -0.40 1.24 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -24.59 13.29 55.43 0.74 -23.86 16 23 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C -0.02 -0.28 9.50 -39.64 -0.38 -0.66 16 28 C -0.11 -1.33 9.54 -39.19 -0.37 -1.71 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.40 2.87 6.51 -40.82 -0.27 2.61 16 43 H 0.14 1.77 7.65 -52.48 -0.40 1.37 16 44 H 0.15 1.82 7.60 -52.49 -0.40 1.42 16 45 H 0.41 7.24 8.54 -34.47 -0.29 6.95 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.04 1.00 7.75 -51.93 -0.40 0.60 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 49 H 0.15 2.13 7.60 -52.49 -0.40 1.73 16 50 H 0.13 1.14 6.41 -52.48 -0.34 0.80 16 LS Contribution 429.45 15.07 6.47 6.47 Total: -1.00 -33.53 429.45 -11.78 -45.30 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.95 Total: 5.29 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -3.13 Total: -19.20 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.33 Total: -52.35 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -1.86 Total: -47.86 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 47.61 SS G_CDS: -0.62 Total: 47.00 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -33.53 -11.78 -45.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012934530.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.991 kcal (2) G-P(sol) polarization free energy of solvation -33.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds