Wall clock time and date at job start Tue Mar 31 2020 06:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47373 * 2 1 4 4 C 1.53002 * 109.47349 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47220 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47220 * 179.97438 * 5 4 3 7 7 N 1.46494 * 109.47221 * 180.02562 * 6 5 4 8 8 C 1.34783 * 120.00396 * 180.02562 * 7 6 5 9 9 O 1.21558 * 119.99423 * 0.02562 * 8 7 6 10 10 C 1.47838 * 120.00536 * 179.97438 * 8 7 6 11 11 C 1.39573 * 120.14815 * 179.97438 * 10 8 7 12 12 C 1.37958 * 119.85588 * 180.02562 * 11 10 8 13 13 C 1.38358 * 120.14626 * 0.02562 * 12 11 10 14 14 S 1.76197 * 119.85557 * 179.97438 * 13 12 11 15 15 O 1.42100 * 106.39925 * 336.45745 * 14 13 12 16 16 O 1.42103 * 106.39966 * 203.53861 * 14 13 12 17 17 N 1.65597 * 107.21750 * 89.99841 * 14 13 12 18 18 C 1.46506 * 120.00079 * 65.00357 * 17 14 13 19 19 C 1.50699 * 109.47214 * 164.72113 * 18 17 14 20 20 H 1.07997 * 119.99775 * 359.97438 * 19 18 17 21 21 C 1.37872 * 119.99959 * 179.97438 * 19 18 17 22 22 N 1.31519 * 120.00023 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00046 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46915 * 60.00523 * 23 21 19 25 25 H 1.48506 * 109.46921 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47393 * 300.00333 * 23 21 19 27 27 C 1.38363 * 120.28836 * 0.23419 * 13 12 11 28 28 C 1.37951 * 120.14604 * 359.48486 * 27 13 12 29 29 H 1.08999 * 109.47333 * 300.00435 * 1 2 3 30 30 H 1.09007 * 109.47142 * 60.00527 * 1 2 3 31 31 H 1.09000 * 109.47391 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47333 * 239.99564 * 2 1 3 33 33 H 1.09007 * 109.47142 * 119.99473 * 2 1 3 34 34 H 1.08999 * 109.47247 * 59.99512 * 3 2 1 35 35 H 1.08999 * 109.46818 * 299.99612 * 3 2 1 36 36 H 1.08999 * 109.47157 * 59.99686 * 4 3 2 37 37 H 1.08999 * 109.47030 * 299.99711 * 4 3 2 38 38 H 1.09008 * 109.47312 * 60.00459 * 5 4 3 39 39 H 1.09002 * 109.47753 * 300.00348 * 5 4 3 40 40 H 1.08999 * 109.47157 * 60.00223 * 6 5 4 41 41 H 1.08999 * 109.47030 * 300.00247 * 6 5 4 42 42 H 0.97002 * 120.00608 * 359.97438 * 7 6 5 43 43 H 1.08007 * 120.07096 * 0.02562 * 11 10 8 44 44 H 1.08000 * 119.92453 * 180.02562 * 12 11 10 45 45 H 0.97005 * 120.00050 * 244.72378 * 17 14 13 46 46 H 1.08999 * 109.46682 * 284.72550 * 18 17 14 47 47 H 1.09000 * 109.47243 * 44.71866 * 18 17 14 48 48 H 0.97001 * 120.00013 * 179.97438 * 22 21 19 49 49 H 1.07996 * 119.92369 * 179.74857 * 27 13 12 50 50 H 1.08005 * 120.07562 * 180.25917 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8848 0.0013 7 7 6.0984 4.2660 0.0013 8 6 7.4235 4.5123 0.0018 9 8 8.2134 3.5884 0.0018 10 6 7.9163 5.9062 0.0012 11 6 9.2879 6.1647 0.0023 12 6 9.7412 7.4677 0.0023 13 6 8.8395 8.5170 0.0018 14 16 9.4268 10.1782 0.0025 15 8 10.7384 10.1398 0.5479 16 8 8.3819 10.9730 0.5462 17 7 9.5915 10.6406 -1.5791 18 6 8.4096 10.7456 -2.4385 19 6 8.7588 11.5251 -3.6800 20 1 9.7609 11.9046 -3.8152 21 6 7.7992 11.7536 -4.6432 22 7 6.5789 11.2918 -4.4783 23 14 8.2320 12.7204 -6.1819 24 1 9.3179 12.0224 -6.9160 25 1 7.0339 12.8268 -7.0529 26 1 8.6879 14.0810 -5.7998 27 6 7.4785 8.2677 0.0061 28 6 7.0121 6.9694 0.0003 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.6767 1.9562 -0.8900 36 1 3.9337 0.9284 -0.8891 37 1 3.9329 0.9288 0.8909 38 1 3.7164 3.3993 0.8896 39 1 3.7171 3.3983 -0.8904 40 1 5.9741 2.3704 -0.8880 41 1 5.9726 2.3716 0.8919 42 1 5.4681 5.0034 0.0002 43 1 9.9929 5.3464 0.0032 44 1 10.8023 7.6690 0.0027 45 1 10.4700 10.8458 -1.9355 46 1 8.0742 9.7471 -2.7186 47 1 7.6129 11.2585 -1.8995 48 1 5.9036 11.4530 -5.1558 49 1 6.7799 9.0912 0.0098 50 1 5.9494 6.7761 -0.0005 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012934530.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:00 Heat of formation + Delta-G solvation = -140.749412 kcal Electronic energy + Delta-G solvation = -29734.333313 eV Core-core repulsion = 25465.279146 eV Total energy + Delta-G solvation = -4269.054167 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.160 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.43036 -39.55018 -38.32923 -37.66595 -36.95689 -36.47267 -35.99828 -34.12236 -33.60095 -32.43753 -32.15076 -29.07522 -28.71922 -25.98124 -24.57411 -24.41655 -23.75598 -22.39365 -21.96499 -21.56615 -20.58160 -19.47620 -19.14742 -18.43022 -17.70807 -17.53457 -17.11513 -17.10141 -16.46768 -16.31643 -16.14154 -15.79538 -15.42693 -15.30512 -15.20168 -14.73098 -14.64681 -14.55115 -14.17751 -14.13476 -14.01919 -13.92924 -13.73213 -13.57985 -13.23543 -13.19008 -13.13454 -12.73257 -12.56545 -12.55175 -12.44737 -12.38020 -12.13314 -12.04447 -11.81006 -11.69397 -11.61168 -11.43093 -11.34278 -11.16370 -10.83983 -10.65024 -10.22195 -10.19903 -10.11016 -8.23757 -6.34871 -0.85988 -0.51128 0.15068 1.43444 1.46648 1.48175 1.55769 1.94686 2.11679 2.42886 2.49573 2.77415 3.11429 3.27788 3.45669 3.65507 3.72965 3.77087 3.97292 4.07108 4.12435 4.20071 4.24581 4.32645 4.41227 4.45912 4.53481 4.60712 4.69734 4.77596 4.80902 4.87261 4.88807 4.90942 4.91793 5.02549 5.05817 5.09027 5.20616 5.22785 5.28888 5.30786 5.32707 5.37919 5.48045 5.53565 5.58332 5.75766 5.98767 6.31200 6.32172 6.78369 6.97480 7.34349 8.86862 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.008520 B = 0.001890 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3285.433558 B =14811.645838 C =17078.620895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.115 4.115 5 C -0.124 4.124 6 C 0.117 3.883 7 N -0.710 5.710 8 C 0.557 3.443 9 O -0.567 6.567 10 C -0.093 4.093 11 C -0.090 4.090 12 C -0.031 4.031 13 C -0.656 4.656 14 S 2.707 3.293 15 O -0.983 6.983 16 O -0.988 6.988 17 N -1.102 6.102 18 C 0.257 3.743 19 C -0.552 4.552 20 H 0.073 0.927 21 C 0.011 3.989 22 N -0.922 5.922 23 Si 0.969 3.031 24 H -0.267 1.267 25 H -0.283 1.283 26 H -0.270 1.270 27 C -0.036 4.036 28 C -0.097 4.097 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.416 0.584 43 H 0.153 0.847 44 H 0.161 0.839 45 H 0.419 0.581 46 H 0.015 0.985 47 H 0.017 0.983 48 H 0.269 0.731 49 H 0.150 0.850 50 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.129 -19.605 9.313 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.153 4.153 5 C -0.162 4.162 6 C -0.006 4.006 7 N -0.363 5.363 8 C 0.344 3.656 9 O -0.447 6.447 10 C -0.096 4.096 11 C -0.109 4.109 12 C -0.050 4.050 13 C -0.744 4.744 14 S 2.798 3.202 15 O -0.973 6.973 16 O -0.978 6.978 17 N -0.864 5.864 18 C 0.133 3.867 19 C -0.591 4.591 20 H 0.091 0.909 21 C -0.190 4.190 22 N -0.561 5.561 23 Si 0.793 3.207 24 H -0.192 1.192 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.055 4.055 28 C -0.117 4.117 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.254 0.746 43 H 0.171 0.829 44 H 0.179 0.821 45 H 0.255 0.745 46 H 0.033 0.967 47 H 0.035 0.965 48 H 0.077 0.923 49 H 0.168 0.832 50 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.805 -19.830 10.041 23.558 hybrid contribution -0.048 0.325 -1.289 1.330 sum -7.853 -19.505 8.752 22.775 Atomic orbital electron populations 1.21791 0.95787 1.01787 1.01861 1.21547 0.96006 0.96900 1.02026 1.21593 0.94729 0.96916 1.02331 1.21487 0.95789 0.95407 1.02620 1.21779 0.91836 0.98740 1.03861 1.21524 0.95506 0.81445 1.02113 1.45906 1.06059 1.10604 1.73700 1.18290 0.83130 0.88009 0.76127 1.90765 1.56432 1.46331 1.51201 1.20356 0.95090 0.93093 1.01069 1.21523 0.95118 0.97263 0.97018 1.21117 1.00413 0.91296 0.92195 1.31105 1.03479 1.24039 1.15825 1.01181 0.72562 0.74015 0.72435 1.93522 1.38609 1.87717 1.77482 1.93532 1.59218 1.67378 1.77703 1.55266 1.17130 1.83692 1.30269 1.18718 0.82359 0.96208 0.89439 1.21599 0.98031 1.35596 1.03879 0.90850 1.25823 0.94719 0.96697 1.01718 1.70024 1.03380 1.46283 1.36408 0.85443 0.77742 0.79084 0.78401 1.19189 1.20864 1.19487 1.21158 0.93516 0.98984 0.91878 1.21678 1.01161 0.90920 0.97895 0.92653 0.92820 0.92590 0.92169 0.91962 0.91668 0.91950 0.91785 0.91467 0.90064 0.90486 0.92052 0.91616 0.74607 0.82909 0.82137 0.74504 0.96720 0.96483 0.92251 0.83233 0.81097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 71.98 0.71 -0.64 16 2 C -0.13 -1.14 5.93 30.59 0.18 -0.96 16 3 C -0.12 -1.03 5.21 30.59 0.16 -0.87 16 4 C -0.11 -1.02 5.21 30.59 0.16 -0.86 16 5 C -0.12 -1.14 5.33 30.59 0.16 -0.97 16 6 C 0.12 1.69 5.67 86.38 0.49 2.18 16 7 N -0.71 -11.87 5.51 -465.98 -2.57 -14.44 16 8 C 0.56 13.52 7.77 86.78 0.67 14.19 16 9 O -0.57 -17.50 16.35 -3.90 -0.06 -17.57 16 10 C -0.09 -2.30 5.87 -20.09 -0.12 -2.41 16 11 C -0.09 -2.33 9.60 22.53 0.22 -2.12 16 12 C -0.03 -0.85 9.50 22.23 0.21 -0.64 16 13 C -0.66 -20.32 5.95 22.33 0.13 -20.19 16 14 S 2.71 96.37 5.74 -56.49 -0.32 96.05 16 15 O -0.98 -36.05 17.27 -128.00 -2.21 -38.26 16 16 O -0.99 -40.88 16.73 -128.00 -2.14 -43.02 16 17 N -1.10 -42.80 5.99 -190.78 -1.14 -43.95 16 18 C 0.26 12.33 5.98 85.63 0.51 12.84 16 19 C -0.55 -28.70 9.27 25.60 0.24 -28.46 16 20 H 0.07 3.60 7.65 -2.91 -0.02 3.58 16 21 C 0.01 0.57 5.46 84.65 0.46 1.03 16 22 N -0.92 -51.12 13.29 21.45 0.28 -50.83 16 23 Si 0.97 41.29 29.54 68.60 2.03 43.32 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 C -0.04 -1.03 9.50 22.23 0.21 -0.82 16 28 C -0.10 -2.21 9.54 22.53 0.21 -1.99 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.42 4.69 6.51 -92.71 -0.60 4.09 16 43 H 0.15 3.63 7.65 -2.91 -0.02 3.61 16 44 H 0.16 3.84 7.60 -2.91 -0.02 3.82 16 45 H 0.42 14.73 8.54 -96.74 -0.83 13.90 16 46 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.02 0.90 7.75 -2.39 -0.02 0.88 16 48 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 49 H 0.15 4.23 7.60 -2.91 -0.02 4.21 16 50 H 0.17 2.39 6.41 -2.91 -0.02 2.37 16 Total: -1.00 -70.97 429.45 -1.99 -72.96 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: -0.48 Total: 26.41 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 4.62 Total: -30.68 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -3.42 Total: -109.22 kcal Atomic # 8 Polarization: -94.43 SS G_CDS: -4.42 Total: -98.85 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 96.37 SS G_CDS: -0.32 Total: 96.05 kcal Total: -70.97 -1.99 -72.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012934530.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.786 kcal (2) G-P(sol) polarization free energy of solvation -70.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds