Wall clock time and date at job start Tue Mar 31 2020 06:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.51258 * 2 1 4 4 C 1.53713 * 109.48424 * 120.25948 * 2 1 3 5 5 N 1.47152 * 108.16097 * 172.40083 * 4 2 1 6 6 C 1.34775 * 120.97974 * 129.43055 * 5 4 2 7 7 O 1.21552 * 120.00489 * 3.53117 * 6 5 4 8 8 C 1.47848 * 120.00049 * 183.53094 * 6 5 4 9 9 C 1.39604 * 120.14087 * 311.28974 * 8 6 5 10 10 C 1.37934 * 119.84804 * 180.02562 * 9 8 6 11 11 C 1.38380 * 120.15232 * 0.02562 * 10 9 8 12 12 C 1.38339 * 120.28561 * 359.97438 * 11 10 9 13 13 S 1.76204 * 119.92358 * 180.02562 * 12 11 10 14 14 O 1.42098 * 106.40294 * 23.53141 * 13 12 11 15 15 O 1.42101 * 106.40324 * 156.46016 * 13 12 11 16 16 N 1.65599 * 107.21445 * 269.99480 * 13 12 11 17 17 C 1.46504 * 120.00038 * 65.00162 * 16 13 12 18 18 C 1.50700 * 109.47075 * 165.00033 * 17 16 13 19 19 H 1.08002 * 120.00538 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99931 * 180.02562 * 18 17 16 21 21 N 1.31507 * 119.99735 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99739 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47283 * 60.00373 * 22 20 18 24 24 H 1.48501 * 109.46862 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47516 * 300.00020 * 22 20 18 26 26 C 1.37976 * 120.14905 * 359.97438 * 12 11 10 27 27 C 1.47148 * 118.03756 * 309.15487 * 5 4 2 28 28 C 1.53293 * 108.38133 * 50.78727 * 27 5 4 29 29 O 1.42958 * 109.51511 * 239.89521 * 2 1 3 30 30 H 1.09007 * 109.47155 * 180.10441 * 1 2 3 31 31 H 1.09001 * 109.47119 * 300.10056 * 1 2 3 32 32 H 1.08994 * 109.47048 * 60.10732 * 1 2 3 33 33 H 1.08998 * 109.83907 * 52.71784 * 4 2 1 34 34 H 1.09005 * 109.74310 * 292.02635 * 4 2 1 35 35 H 1.07996 * 120.07635 * 0.02562 * 9 8 6 36 36 H 1.08005 * 119.92335 * 179.72795 * 10 9 8 37 37 H 1.08000 * 119.85907 * 179.97438 * 11 10 9 38 38 H 0.97001 * 120.00445 * 244.99804 * 16 13 12 39 39 H 1.08994 * 109.46790 * 284.99646 * 17 16 13 40 40 H 1.08994 * 109.47403 * 44.99791 * 17 16 13 41 41 H 0.97002 * 119.99824 * 180.02562 * 21 20 18 42 42 H 1.08004 * 120.07057 * 180.02562 * 26 12 11 43 43 H 1.09001 * 109.68262 * 170.50895 * 27 5 4 44 44 H 1.09002 * 109.68382 * 291.03191 * 27 5 4 45 45 H 1.09002 * 109.51715 * 67.62243 * 28 27 5 46 46 H 1.09004 * 109.51538 * 187.72359 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0427 -0.7302 1.2517 5 7 3.5023 -0.8749 1.1327 6 6 4.3205 -0.5024 2.1368 7 8 3.8531 -0.0992 3.1839 8 6 5.7866 -0.5842 1.9647 9 6 6.3699 -1.7505 1.4665 10 6 7.7385 -1.8204 1.3088 11 6 8.5329 -0.7380 1.6438 12 6 7.9611 0.4207 2.1379 13 16 8.9817 1.7934 2.5607 14 8 10.1782 1.6509 1.8076 15 8 8.1529 2.9457 2.4925 16 7 9.4066 1.6167 4.1515 17 6 10.2438 0.4878 4.5650 18 6 10.7862 0.7444 5.9474 19 1 10.5330 1.6574 6.4660 20 6 11.6066 -0.1858 6.5498 21 7 11.9153 -1.2971 5.9182 22 14 12.2794 0.1328 8.2631 23 1 11.1518 0.2877 9.2169 24 1 13.1279 -1.0115 8.6822 25 1 13.0929 1.3751 8.2524 26 6 6.5934 0.5042 2.2995 27 6 4.0417 -1.4440 -0.1125 28 6 3.4312 -0.6840 -1.2955 29 8 2.0076 -0.6759 -1.1657 30 1 -0.3634 -1.0277 0.0019 31 1 -0.3633 0.5154 0.8891 32 1 -0.3633 0.5121 -0.8909 33 1 1.5806 -1.7150 1.3207 34 1 1.8028 -0.1483 2.1416 35 1 5.7511 -2.5962 1.2051 36 1 8.1914 -2.7238 0.9276 37 1 9.6040 -0.7981 1.5188 38 1 9.1012 2.2606 4.8096 39 1 9.6464 -0.4239 4.5726 40 1 11.0717 0.3739 3.8653 41 1 12.4921 -1.9517 6.3421 42 1 6.1483 1.4095 2.6851 43 1 5.1261 -1.3350 -0.1263 44 1 3.7779 -2.4995 -0.1782 45 1 3.8022 0.3410 -1.3004 46 1 3.7098 -1.1763 -2.2273 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013010439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:38 Heat of formation + Delta-G solvation = -118.599721 kcal Electronic energy + Delta-G solvation = -31310.558329 eV Core-core repulsion = 26906.631550 eV Total energy + Delta-G solvation = -4403.926779 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.128 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.00657 -39.31608 -38.20160 -36.80572 -35.42976 -35.22723 -34.67563 -33.50176 -32.19196 -31.59417 -31.35189 -29.22061 -27.08298 -26.77826 -24.27776 -23.58801 -23.22481 -22.52514 -21.67154 -20.23287 -19.05251 -18.07907 -17.41724 -17.18930 -16.89336 -16.44936 -16.18804 -16.02077 -15.80050 -15.65005 -15.45463 -15.16210 -14.73936 -14.53103 -14.36003 -13.92030 -13.64131 -13.48627 -13.26780 -13.06604 -12.71340 -12.70380 -12.41297 -12.28912 -12.18897 -12.14408 -11.90880 -11.85360 -11.68675 -11.66077 -11.54271 -11.14799 -10.94999 -10.82330 -10.70620 -10.58002 -10.15338 -10.13158 -9.49934 -9.48166 -9.19462 -8.95548 -8.93801 -8.28004 -6.20933 -4.25294 0.53277 0.86309 0.98938 2.33553 2.47180 3.21182 3.26148 3.27758 3.30323 3.33170 3.66622 4.01074 4.16618 4.19862 4.32739 4.43998 4.52879 4.55510 4.64762 4.65668 4.68457 4.84353 4.86908 5.01600 5.09836 5.12546 5.16402 5.24400 5.28211 5.32648 5.36844 5.43672 5.50585 5.67345 5.68540 5.87979 5.97202 5.99904 6.05225 6.37464 6.57878 6.67316 6.89343 7.22747 7.28385 7.74062 7.76972 7.77306 8.13435 8.78244 9.39756 10.89462 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.002313 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.194400 B =12103.605666 C =12442.053079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.066 0.934 4 C 0.084 3.916 5 N -0.614 5.614 6 C 0.568 3.432 7 O -0.523 6.523 8 C -0.157 4.157 9 C -0.046 4.046 10 C -0.142 4.142 11 C 0.011 3.989 12 C -0.671 4.671 13 S 2.690 3.310 14 O -0.958 6.958 15 O -0.976 6.976 16 N -1.100 6.100 17 C 0.245 3.755 18 C -0.530 4.530 19 H 0.066 0.934 20 C 0.062 3.938 21 N -0.891 5.891 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.031 3.969 27 C 0.061 3.939 28 C 0.048 3.952 29 O -0.377 6.377 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.150 0.850 38 H 0.412 0.588 39 H 0.022 0.978 40 H 0.040 0.960 41 H 0.266 0.734 42 H 0.146 0.854 43 H 0.105 0.895 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.489 -2.974 -15.372 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.014 3.986 3 H 0.084 0.916 4 C -0.039 4.039 5 N -0.349 5.349 6 C 0.357 3.643 7 O -0.399 6.399 8 C -0.161 4.161 9 C -0.065 4.065 10 C -0.160 4.160 11 C -0.008 4.008 12 C -0.755 4.755 13 S 2.777 3.223 14 O -0.948 6.948 15 O -0.966 6.966 16 N -0.863 5.863 17 C 0.122 3.878 18 C -0.570 4.570 19 H 0.084 0.916 20 C -0.141 4.141 21 N -0.529 5.529 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.200 1.200 26 C 0.011 3.989 27 C -0.062 4.062 28 C -0.030 4.030 29 O -0.296 6.296 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.152 0.848 36 H 0.159 0.841 37 H 0.168 0.832 38 H 0.247 0.753 39 H 0.040 0.960 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.163 0.837 43 H 0.123 0.877 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.466 -2.511 -15.612 24.311 hybrid contribution 0.131 -0.490 1.531 1.613 sum -18.335 -3.001 -14.080 23.312 Atomic orbital electron populations 1.21730 0.91965 1.03326 1.03070 1.22600 0.95751 0.95480 0.84742 0.91646 1.22469 0.79338 1.02154 0.99890 1.48046 1.06763 1.63636 1.16439 1.18356 0.86168 0.76723 0.83054 1.90817 1.76898 1.45866 1.26301 1.19802 0.92712 0.96846 1.06766 1.21539 0.95657 0.96119 0.93195 1.21257 0.93155 0.99437 1.02192 1.21277 1.01239 0.90188 0.88105 1.31350 1.08320 1.20256 1.15611 1.01958 0.73579 0.73053 0.73727 1.93575 1.44354 1.86323 1.70542 1.93540 1.69696 1.46595 1.86816 1.55440 1.65334 1.39738 1.25810 1.19110 0.89058 0.82315 0.97275 1.21150 1.30470 1.05256 1.00106 0.91582 1.24964 0.95901 0.94835 0.98447 1.69914 1.36207 1.08680 1.38074 0.86459 0.78976 0.77883 0.83539 1.20067 1.21116 1.19978 1.20837 0.91174 0.97403 0.89475 1.22801 1.00957 0.98514 0.83909 1.22989 0.81275 1.00525 0.98183 1.87964 1.20793 1.77432 1.43393 0.91476 0.90560 0.91284 0.90399 0.87857 0.84819 0.84149 0.83222 0.75286 0.96025 0.94239 0.92391 0.83673 0.87682 0.90028 0.92310 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.57 37.16 0.36 -0.48 16 2 C 0.07 0.57 3.41 -26.36 -0.09 0.48 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.08 0.75 5.94 -3.32 -0.02 0.73 16 5 N -0.61 -6.34 3.01 -173.13 -0.52 -6.86 16 6 C 0.57 7.77 7.27 -12.33 -0.09 7.68 16 7 O -0.52 -8.97 16.51 5.32 0.09 -8.88 16 8 C -0.16 -2.12 5.06 -104.97 -0.53 -2.65 16 9 C -0.05 -0.50 7.38 -39.18 -0.29 -0.79 16 10 C -0.14 -1.60 10.03 -39.64 -0.40 -2.00 16 11 C 0.01 0.16 9.52 -39.49 -0.38 -0.22 16 12 C -0.67 -10.66 5.94 -39.64 -0.24 -10.89 16 13 S 2.69 48.74 5.74 -107.50 -0.62 48.13 16 14 O -0.96 -19.57 16.74 -57.17 -0.96 -20.53 16 15 O -0.98 -18.62 17.27 -57.17 -0.99 -19.61 16 16 N -1.10 -21.95 5.99 -11.66 -0.07 -22.02 16 17 C 0.25 5.92 5.98 -5.19 -0.03 5.89 16 18 C -0.53 -14.05 9.27 -34.44 -0.32 -14.37 16 19 H 0.07 1.67 7.65 -52.49 -0.40 1.27 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -24.96 13.29 55.43 0.74 -24.23 16 22 Si 0.90 20.71 29.54 -169.99 -5.02 15.68 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.03 0.47 9.19 -39.19 -0.36 0.11 16 27 C 0.06 0.45 5.42 -3.54 -0.02 0.43 16 28 C 0.05 0.33 6.98 37.31 0.26 0.59 16 29 O -0.38 -3.25 10.38 -35.23 -0.37 -3.62 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.03 7.11 -51.93 -0.37 0.66 16 35 H 0.13 1.04 6.91 -52.49 -0.36 0.67 16 36 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 37 H 0.15 2.10 7.60 -52.49 -0.40 1.70 16 38 H 0.41 7.58 8.54 -34.47 -0.29 7.29 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.04 1.01 7.75 -51.93 -0.40 0.61 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.15 2.21 7.61 -52.48 -0.40 1.81 16 43 H 0.11 0.74 4.69 -51.93 -0.24 0.49 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 393.72 15.07 5.93 5.93 Total: -1.00 -34.92 393.72 -10.26 -45.18 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.23 Total: 4.72 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -2.24 Total: -13.90 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.14 Total: -53.11 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -2.22 Total: -52.64 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 48.74 SS G_CDS: -0.62 Total: 48.13 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.92 -10.26 -45.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013010439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.423 kcal (2) G-P(sol) polarization free energy of solvation -34.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds