Wall clock time and date at job start Tue Mar 31 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86796 * 119.99736 * 2 1 4 4 H 1.48504 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46998 * 300.00222 * 3 2 1 6 6 H 1.48500 * 109.47292 * 60.00241 * 3 2 1 7 7 C 1.39905 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99727 * 175.55598 * 7 2 1 9 9 C 1.41153 * 120.00048 * 355.54915 * 7 2 1 10 10 C 1.40861 * 120.16498 * 214.78419 * 9 7 2 11 11 C 1.36376 * 119.83189 * 180.02562 * 10 9 7 12 12 C 1.39484 * 120.16311 * 359.97438 * 11 10 9 13 13 N 1.39243 * 119.83084 * 179.97438 * 12 11 10 14 14 C 1.34777 * 120.00386 * 35.28422 * 13 12 11 15 15 O 1.21282 * 119.99740 * 355.71553 * 14 13 12 16 16 C 1.50691 * 120.00293 * 175.70885 * 14 13 12 17 17 C 1.52997 * 109.47257 * 179.97438 * 16 14 13 18 18 N 1.46504 * 109.47374 * 179.97438 * 17 16 14 19 19 C 1.34703 * 123.06523 * 89.99626 * 18 17 16 20 20 O 1.21228 * 126.39059 * 11.91185 * 19 18 17 21 21 C 1.53780 * 107.21504 * 191.88272 * 19 18 17 22 22 H 1.09006 * 113.72190 * 212.32174 * 21 19 18 23 23 C 1.53080 * 104.80858 * 87.29646 * 21 19 18 24 24 C 1.48951 * 113.35239 * 214.67278 * 23 21 19 25 25 C 1.29144 * 124.87408 * 17.55167 * 24 23 21 26 26 C 1.49602 * 123.30344 * 357.69744 * 25 24 23 27 27 C 1.49320 * 113.69978 * 11.13417 * 26 25 24 28 28 H 1.08996 * 106.95642 * 205.55643 * 27 26 25 29 29 C 1.35181 * 123.07329 * 270.00735 * 18 17 16 30 30 O 1.21228 * 126.85876 * 9.80304 * 29 18 17 31 31 C 1.39480 * 120.33637 * 0.25732 * 12 11 10 32 32 C 1.36372 * 120.16591 * 359.48283 * 31 12 11 33 33 H 0.96993 * 120.00390 * 359.97438 * 1 2 3 34 34 H 1.08000 * 120.09035 * 0.02562 * 10 9 7 35 35 H 1.07997 * 119.92316 * 179.97438 * 11 10 9 36 36 H 0.97005 * 119.99654 * 215.28926 * 13 12 11 37 37 H 1.09001 * 109.47059 * 60.00101 * 16 14 13 38 38 H 1.09000 * 109.47137 * 300.00386 * 16 14 13 39 39 H 1.08999 * 109.47079 * 60.00625 * 17 16 14 40 40 H 1.09000 * 109.47394 * 300.00267 * 17 16 14 41 41 H 1.09003 * 108.70482 * 335.67132 * 23 21 19 42 42 H 1.09000 * 108.70583 * 93.67205 * 23 21 19 43 43 H 1.07995 * 117.56020 * 197.55387 * 24 23 21 44 44 H 1.08004 * 118.34955 * 177.66547 * 25 24 23 45 45 H 1.08997 * 108.63836 * 250.04306 * 26 25 24 46 46 H 1.09006 * 108.53029 * 132.15008 * 26 25 24 47 47 H 1.07999 * 119.91235 * 179.74675 * 31 12 11 48 48 H 1.08007 * 120.08868 * 180.26014 * 32 31 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.7027 1.3465 -0.0006 5 1 1.8838 2.3965 -1.2125 6 1 1.8839 2.3964 1.2125 7 6 2.0083 -1.2116 -0.0005 8 1 3.0857 -1.2129 -0.0730 9 6 1.3057 -2.4322 0.0938 10 6 1.8650 -3.5185 0.7947 11 6 1.1805 -4.6949 0.8811 12 6 -0.0706 -4.8237 0.2781 13 7 -0.7632 -6.0282 0.3702 14 6 -0.6804 -6.7690 1.4930 15 8 0.0575 -6.4265 2.3925 16 6 -1.5049 -8.0228 1.6310 17 6 -1.2256 -8.6701 2.9889 18 7 -2.0276 -9.8887 3.1233 19 6 -1.5925 -11.1018 2.7315 20 8 -0.4576 -11.3928 2.4200 21 6 -2.8038 -12.0489 2.7538 22 1 -2.5509 -13.0785 3.0069 23 6 -3.4501 -11.8900 1.3752 24 6 -4.9352 -12.0002 1.4031 25 6 -5.6644 -11.8861 2.4629 26 6 -5.0975 -11.6733 3.8309 27 6 -3.6413 -11.3432 3.8325 28 1 -3.2455 -11.6559 4.7987 29 6 -3.2718 -9.8984 3.6516 30 8 -3.9536 -8.9338 3.9243 31 6 -0.6288 -3.7541 -0.4218 32 6 0.0415 -2.5699 -0.5123 33 1 -0.4850 0.8400 0.0004 34 1 2.8334 -3.4201 1.2626 35 1 1.6082 -5.5288 1.4178 36 1 -1.3052 -6.3341 -0.3739 37 1 -1.2418 -8.7201 0.8356 38 1 -2.5631 -7.7716 1.5586 39 1 -1.4885 -7.9731 3.7846 40 1 -0.1674 -8.9213 3.0608 41 1 -3.1795 -10.9138 0.9727 42 1 -3.0547 -12.6601 0.7129 43 1 -5.4399 -12.1897 0.4673 44 1 -6.7374 -11.9468 2.3561 45 1 -5.2497 -12.5803 4.4160 46 1 -5.6404 -10.8571 4.3077 47 1 -1.5961 -3.8628 -0.8896 48 1 -0.3938 -1.7412 -1.0510 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013688762.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:13 Heat of formation + Delta-G solvation = -56.484192 kcal Electronic energy + Delta-G solvation = -32107.391197 eV Core-core repulsion = 27706.547092 eV Total energy + Delta-G solvation = -4400.844104 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.157 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.74247 -39.77335 -38.94150 -38.05761 -37.32739 -36.13730 -34.49317 -33.41706 -32.90765 -31.86140 -30.75983 -29.58735 -28.79845 -25.99781 -25.44980 -24.67212 -23.58420 -22.37927 -21.59611 -20.79507 -19.89211 -19.62881 -18.52980 -17.68518 -17.31206 -17.14240 -16.96168 -16.44814 -16.27156 -15.95484 -15.43708 -15.23689 -15.12841 -14.81480 -14.63332 -14.06485 -13.93865 -13.88425 -13.62866 -13.51526 -13.37645 -13.05584 -12.83814 -12.66072 -12.62305 -12.50592 -12.13524 -11.77986 -11.71330 -11.46516 -11.37500 -11.16571 -11.10814 -10.95795 -10.74081 -10.58842 -10.33357 -10.11504 -9.99574 -9.52056 -9.49715 -9.45808 -9.14855 -8.89636 -7.55500 -6.87759 -6.62198 -4.34797 1.13748 1.76883 2.04498 2.22371 2.51345 2.98794 3.08310 3.10164 3.15524 3.29761 3.32908 3.63701 3.71269 3.77331 3.98167 4.07678 4.43997 4.52961 4.61606 4.64509 4.68754 4.69225 4.74938 4.88255 4.92709 5.10004 5.18444 5.19639 5.32662 5.35734 5.37380 5.45354 5.54802 5.65535 5.74436 6.07253 6.18425 6.39190 6.43075 6.43790 6.73439 6.89990 6.90240 7.06319 7.19604 7.28812 7.39549 7.63339 7.72363 7.84677 8.05848 8.23522 8.30743 8.60804 8.70322 8.92484 8.99103 10.28901 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.022505 B = 0.001682 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.843036 B =16643.538777 C =16967.983855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.068 3.932 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.100 3.900 10 C -0.205 4.205 11 C -0.085 4.085 12 C 0.001 3.999 13 N -0.649 5.649 14 C 0.505 3.495 15 O -0.531 6.531 16 C -0.155 4.155 17 C 0.115 3.885 18 N -0.584 5.584 19 C 0.524 3.476 20 O -0.467 6.467 21 C -0.102 4.102 22 H 0.136 0.864 23 C -0.085 4.085 24 C -0.155 4.155 25 C -0.147 4.147 26 C -0.075 4.075 27 C -0.126 4.126 28 H 0.116 0.884 29 C 0.539 3.461 30 O -0.461 6.461 31 C -0.120 4.120 32 C -0.142 4.142 33 H 0.277 0.723 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.396 0.604 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.563 -25.468 3.499 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.097 3.903 10 C -0.225 4.225 11 C -0.105 4.105 12 C -0.091 4.091 13 N -0.291 5.291 14 C 0.291 3.709 15 O -0.408 6.408 16 C -0.196 4.196 17 C -0.006 4.006 18 N -0.329 5.329 19 C 0.312 3.688 20 O -0.336 6.336 21 C -0.124 4.124 22 H 0.153 0.847 23 C -0.122 4.122 24 C -0.173 4.173 25 C -0.165 4.165 26 C -0.112 4.112 27 C -0.148 4.148 28 H 0.134 0.866 29 C 0.327 3.673 30 O -0.330 6.330 31 C -0.140 4.140 32 C -0.162 4.162 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.229 0.771 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.109 0.891 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.957 -24.642 4.145 27.701 hybrid contribution -0.030 0.775 -0.345 0.849 sum -11.986 -23.867 3.799 26.977 Atomic orbital electron populations 1.69767 1.07289 1.28625 1.38199 1.25892 0.94954 1.01213 0.92571 0.86141 0.80595 0.80816 0.78387 1.18572 1.20000 1.19982 1.19538 0.94782 0.90190 1.44562 0.90530 1.17743 0.92291 0.92043 0.88221 1.20810 1.01244 0.94949 1.05533 1.20400 0.92739 0.97889 0.99455 1.17273 0.94249 0.85793 1.11751 1.42969 1.48682 1.21330 1.16160 1.20154 0.83337 0.84925 0.82460 1.90707 1.39117 1.70980 1.39958 1.21922 1.02006 0.96616 0.99051 1.21531 0.96814 0.84251 0.97996 1.47403 1.17797 1.10420 1.57247 1.21715 0.89478 0.83093 0.74512 1.90799 1.20285 1.78780 1.43759 1.22682 0.92409 1.00709 0.96575 0.84655 1.20123 0.93903 1.03652 0.94534 1.21558 0.94528 1.02035 0.99179 1.21861 1.00043 1.00560 0.94079 1.19371 0.91679 1.03459 0.96727 1.21057 0.99196 0.92780 1.01728 0.86623 1.20603 0.79963 0.91785 0.74931 1.90800 1.53914 1.41263 1.47033 1.20315 0.98340 0.93152 1.02205 1.21199 0.97288 0.95549 1.02119 0.91185 0.88554 0.87448 0.77059 0.88880 0.88419 0.87940 0.87708 0.90473 0.89105 0.87025 0.86677 0.89070 0.88972 0.89086 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.29 10.59 55.55 0.59 -20.70 16 2 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 3 Si 0.92 19.18 29.56 -169.99 -5.03 14.16 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.46 -12.38 9.03 -37.85 -0.34 -12.72 16 8 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 9 C 0.10 2.70 5.55 -106.80 -0.59 2.10 16 10 C -0.21 -5.26 9.74 -39.26 -0.38 -5.64 16 11 C -0.08 -2.06 8.61 -39.79 -0.34 -2.40 16 12 C 0.00 0.03 6.31 -83.57 -0.53 -0.49 16 13 N -0.65 -11.34 5.30 -9.74 -0.05 -11.39 16 14 C 0.51 8.63 7.66 -10.99 -0.08 8.55 16 15 O -0.53 -11.17 13.40 5.56 0.07 -11.10 16 16 C -0.15 -1.87 6.02 -27.89 -0.17 -2.04 16 17 C 0.12 1.40 4.96 -4.04 -0.02 1.38 16 18 N -0.58 -5.82 2.54 -114.18 -0.29 -6.11 16 19 C 0.52 4.84 6.73 -9.46 -0.06 4.78 16 20 O -0.47 -5.85 17.58 5.60 0.10 -5.75 16 21 C -0.10 -0.57 4.07 -89.80 -0.37 -0.93 16 22 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 23 C -0.08 -0.46 5.18 -28.68 -0.15 -0.61 16 24 C -0.15 -0.79 9.76 -36.35 -0.35 -1.15 16 25 C -0.15 -0.73 9.90 -36.05 -0.36 -1.09 16 26 C -0.08 -0.35 5.65 -30.22 -0.17 -0.52 16 27 C -0.13 -0.73 2.39 -93.44 -0.22 -0.95 16 28 H 0.12 0.45 8.11 -51.93 -0.42 0.03 16 29 C 0.54 5.18 7.44 -11.04 -0.08 5.09 16 30 O -0.46 -5.95 17.39 5.60 0.10 -5.85 16 31 C -0.12 -2.76 9.90 -39.79 -0.39 -3.15 16 32 C -0.14 -3.67 8.62 -39.26 -0.34 -4.01 16 33 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 34 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 35 H 0.11 2.56 6.22 -52.49 -0.33 2.23 16 36 H 0.40 5.38 8.82 -40.82 -0.36 5.02 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.10 1.37 7.98 -51.93 -0.41 0.95 16 40 H 0.10 1.37 7.79 -51.93 -0.40 0.97 16 41 H 0.08 0.51 7.43 -51.93 -0.39 0.13 16 42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.11 0.47 8.06 -52.49 -0.42 0.04 16 44 H 0.12 0.45 8.06 -52.48 -0.42 0.03 16 45 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.09 0.51 7.79 -51.93 -0.40 0.11 16 47 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 48 H 0.13 3.53 6.13 -52.48 -0.32 3.20 16 LS Contribution 399.97 15.07 6.03 6.03 Total: -1.00 -33.57 399.97 -9.92 -43.49 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.39 Total: 9.37 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -5.05 Total: -12.14 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.25 Total: -38.21 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: 0.27 Total: -22.70 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.57 -9.92 -43.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013688762.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.995 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds