Wall clock time and date at job start Tue Mar 31 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31648 * 1 3 3 Si 1.86802 * 120.00327 * 2 1 4 4 H 1.48497 * 109.47105 * 239.99674 * 3 2 1 5 5 H 1.48500 * 109.47157 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47046 * 120.00013 * 3 2 1 7 7 C 1.38645 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99777 * 180.02562 * 7 2 1 9 9 S 1.76194 * 119.99878 * 359.97438 * 7 2 1 10 10 C 1.76205 * 99.99935 * 180.02562 * 9 7 2 11 11 N 1.31579 * 126.38799 * 0.02562 * 10 9 7 12 12 N 1.28514 * 110.02371 * 179.97438 * 11 10 9 13 13 C 1.31486 * 109.95274 * 0.02562 * 12 11 10 14 14 C 1.47796 * 126.44354 * 180.02562 * 13 12 11 15 15 C 1.39656 * 120.11591 * 197.06263 * 14 13 12 16 16 C 1.37957 * 119.95786 * 179.97438 * 15 14 13 17 17 C 1.38298 * 120.20789 * 359.97438 * 16 15 14 18 18 C 1.38828 * 120.24466 * 0.02562 * 17 16 15 19 19 O 1.35911 * 119.98480 * 180.02562 * 18 17 16 20 20 C 1.42902 * 116.99697 * 359.97438 * 19 18 17 21 21 C 1.50702 * 109.47112 * 180.02562 * 20 19 18 22 22 C 1.38238 * 119.99772 * 269.72657 * 21 20 19 23 23 C 1.38235 * 119.99434 * 179.76283 * 22 21 20 24 24 C 1.38236 * 120.00279 * 0.51156 * 23 22 21 25 25 C 1.38229 * 119.99880 * 359.74075 * 24 23 22 26 26 C 1.38229 * 119.99813 * 89.99901 * 21 20 19 27 27 C 1.38479 * 120.03749 * 359.71913 * 18 17 16 28 28 N 1.36727 * 126.39400 * 179.71329 * 10 9 7 29 29 N 1.36603 * 127.14971 * 0.02562 * 28 10 9 30 30 H 0.97004 * 119.99330 * 359.97438 * 1 2 3 31 31 H 1.07993 * 120.02505 * 359.97438 * 15 14 13 32 32 H 1.08002 * 119.89273 * 179.97438 * 16 15 14 33 33 H 1.08001 * 119.87671 * 180.02562 * 17 16 15 34 34 H 1.09001 * 109.47076 * 300.00317 * 20 19 18 35 35 H 1.08998 * 109.47070 * 59.99952 * 20 19 18 36 36 H 1.07996 * 119.99928 * 359.97438 * 22 21 20 37 37 H 1.08001 * 119.99497 * 180.22871 * 23 22 21 38 38 H 1.08000 * 119.99671 * 179.72126 * 24 23 22 39 39 H 1.08002 * 120.00517 * 179.97438 * 25 24 23 40 40 H 1.08001 * 120.00373 * 0.02562 * 26 21 20 41 41 H 1.07999 * 120.10734 * 180.27368 * 27 18 17 42 42 H 1.00898 * 111.00609 * 95.67298 * 29 28 10 43 43 H 1.00904 * 110.99763 * 219.62838 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2506 1.6177 0.0000 4 1 3.1044 1.6963 -1.2124 5 1 1.2857 2.7465 0.0006 6 1 3.1043 1.6963 1.2125 7 6 2.0096 -1.2008 -0.0005 8 1 3.0896 -1.2008 -0.0001 9 16 1.1285 -2.7266 -0.0005 10 6 2.4782 -3.8593 -0.0005 11 7 3.7571 -3.5497 -0.0001 12 7 4.4688 -4.6198 0.0003 13 6 3.6883 -5.6779 -0.0004 14 6 4.1238 -7.0902 0.0002 15 6 3.2272 -8.1002 -0.3552 16 6 3.6373 -9.4174 -0.3539 17 6 4.9349 -9.7417 -0.0022 18 6 5.8333 -8.7446 0.3525 19 8 7.1074 -9.0693 0.6967 20 6 7.4527 -10.4557 0.6720 21 6 8.8939 -10.6218 1.0803 22 6 9.8905 -10.5995 0.1227 23 6 11.2128 -10.7470 0.4978 24 6 11.5376 -10.9273 1.8293 25 6 10.5405 -10.9548 2.7863 26 6 9.2186 -10.8021 2.4118 27 6 5.4339 -7.4186 0.3496 28 7 2.3921 -5.2238 0.0050 29 7 1.2535 -5.9786 0.0110 30 1 -0.4849 0.8401 0.0004 31 1 2.2133 -7.8503 -0.6307 32 1 2.9429 -10.1976 -0.6285 33 1 5.2505 -10.7746 -0.0035 34 1 6.8136 -11.0017 1.3659 35 1 7.3128 -10.8471 -0.3356 36 1 9.6363 -10.4635 -0.9181 37 1 11.9918 -10.7259 -0.2500 38 1 12.5703 -11.0470 2.1218 39 1 10.7941 -11.0960 3.8266 40 1 8.4395 -10.8243 3.1595 41 1 6.1332 -6.6416 0.6211 42 1 1.0009 -6.2596 -0.9245 43 1 1.3547 -6.7808 0.6147 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015086124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:52 Heat of formation + Delta-G solvation = 117.537182 kcal Electronic energy + Delta-G solvation = -27991.628302 eV Core-core repulsion = 23937.542858 eV Total energy + Delta-G solvation = -4054.085444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 368.105 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.15282 -40.48351 -39.42386 -37.63971 -35.95580 -32.71572 -32.66601 -32.23681 -31.32499 -30.20203 -29.28041 -28.80057 -26.85503 -25.69541 -23.69424 -23.01710 -22.87548 -21.86306 -21.57221 -20.76042 -18.79561 -18.12751 -17.40561 -17.11614 -16.91985 -16.37049 -16.35134 -16.16666 -15.45611 -15.32686 -14.92915 -14.92413 -14.60172 -14.45748 -13.88124 -13.82287 -13.67956 -13.26597 -13.03986 -12.87194 -12.79488 -12.21456 -11.64220 -11.61180 -11.60732 -11.26805 -11.18151 -11.14578 -11.10716 -10.88838 -10.52902 -10.20205 -10.06631 -9.96117 -9.33350 -9.31357 -9.29353 -9.18069 -8.80286 -8.61517 -8.38077 -6.74813 -6.46670 -4.19993 0.75386 0.78386 0.99089 1.20389 2.24558 2.36426 2.85099 3.01447 3.23122 3.24687 3.31966 3.34548 3.53458 3.76459 4.01371 4.12696 4.27710 4.34038 4.55280 4.57716 4.70273 4.70796 4.75722 4.76938 4.86746 4.91207 4.97325 5.08026 5.08274 5.20694 5.24921 5.40255 5.51651 5.61061 5.69353 5.98094 5.99668 6.01983 6.04069 6.09034 6.12691 6.14093 6.32923 6.47969 6.54255 6.54807 6.69624 7.15485 7.57187 7.88187 8.36610 9.05023 9.28214 10.60810 Molecular weight = 368.10amu Principal moments of inertia in cm(-1) A = 0.015406 B = 0.001715 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.007035 B =16321.046228 C =17777.558691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.078 3.922 3 Si 0.933 3.067 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.546 4.546 8 H 0.105 0.895 9 S 0.182 5.818 10 C 0.202 3.798 11 N -0.303 5.303 12 N -0.247 5.247 13 C 0.127 3.873 14 C 0.055 3.945 15 C -0.169 4.169 16 C -0.068 4.068 17 C -0.212 4.212 18 C 0.138 3.862 19 O -0.305 6.305 20 C 0.101 3.899 21 C -0.096 4.096 22 C -0.095 4.095 23 C -0.124 4.124 24 C -0.111 4.111 25 C -0.124 4.124 26 C -0.095 4.095 27 C -0.117 4.117 28 N -0.321 5.321 29 N -0.580 5.580 30 H 0.275 0.725 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.145 0.855 42 H 0.358 0.642 43 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.850 -27.464 1.145 30.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.132 4.132 3 Si 0.758 3.242 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.695 4.695 8 H 0.123 0.877 9 S 0.417 5.583 10 C -0.167 4.167 11 N -0.151 5.151 12 N -0.091 5.091 13 C -0.140 4.140 14 C 0.052 3.948 15 C -0.190 4.190 16 C -0.086 4.086 17 C -0.232 4.232 18 C 0.093 3.907 19 O -0.219 6.219 20 C 0.027 3.973 21 C -0.096 4.096 22 C -0.113 4.113 23 C -0.142 4.142 24 C -0.129 4.129 25 C -0.142 4.142 26 C -0.113 4.113 27 C -0.138 4.138 28 N -0.109 5.109 29 N -0.212 5.212 30 H 0.085 0.915 31 H 0.135 0.865 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.162 0.838 42 H 0.176 0.824 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 12.466 -25.805 1.501 28.697 hybrid contribution 0.949 -0.743 -0.455 1.288 sum 13.415 -26.547 1.047 29.763 Atomic orbital electron populations 1.69947 1.06066 1.28628 1.46420 1.25063 0.95161 0.99633 0.93319 0.85977 0.79086 0.79604 0.79562 1.19408 1.20784 1.19392 1.23309 0.97524 0.89845 1.58796 0.87734 1.83732 0.96676 0.93925 1.83984 1.28457 1.02204 0.84117 1.01875 1.74968 0.98544 1.17641 1.23969 1.74256 1.26213 0.94380 1.14215 1.22804 0.82077 0.95145 1.13964 1.17153 0.93133 0.86854 0.97653 1.21091 0.99495 0.92809 1.05615 1.20721 0.95213 0.95653 0.97042 1.21267 0.94947 0.98834 1.08141 1.18764 0.83591 0.93294 0.95058 1.86192 1.26047 1.26309 1.83327 1.21590 0.92786 0.81363 1.01593 1.19486 0.93670 1.02467 0.94016 1.21112 0.92612 0.98082 0.99459 1.21181 0.96257 1.00313 0.96412 1.21256 0.99512 0.98870 0.93235 1.21180 0.92754 1.00481 0.99761 1.21109 0.96845 0.98149 0.95174 1.20368 0.95630 0.94126 1.03682 1.44887 1.01108 1.05051 1.59814 1.59474 1.17179 1.27828 1.16769 0.91507 0.86521 0.85238 0.85316 0.91002 0.90993 0.85715 0.85696 0.85843 0.85701 0.85727 0.83752 0.82379 0.81361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.42 13.22 55.48 0.73 -23.69 16 2 C 0.08 2.12 5.49 -17.48 -0.10 2.03 16 3 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.55 -15.35 9.37 30.88 0.29 -15.06 16 8 H 0.10 3.02 6.92 -52.49 -0.36 2.66 16 9 S 0.18 4.61 21.85 -107.50 -2.35 2.26 16 10 C 0.20 4.78 8.19 -87.91 -0.72 4.06 16 11 N -0.30 -7.69 11.03 30.77 0.34 -7.35 16 12 N -0.25 -5.64 11.99 32.57 0.39 -5.25 16 13 C 0.13 2.43 7.74 -153.82 -1.19 1.24 16 14 C 0.06 0.83 5.87 -104.98 -0.62 0.21 16 15 C -0.17 -1.92 8.89 -39.16 -0.35 -2.27 16 16 C -0.07 -0.62 10.03 -39.66 -0.40 -1.02 16 17 C -0.21 -2.01 9.03 -39.34 -0.36 -2.36 16 18 C 0.14 1.66 6.68 -39.27 -0.26 1.39 16 19 O -0.30 -3.53 10.12 -19.46 -0.20 -3.73 16 20 C 0.10 0.81 4.86 36.01 0.18 0.98 16 21 C -0.10 -0.81 5.51 -104.62 -0.58 -1.38 16 22 C -0.09 -0.74 9.70 -39.58 -0.38 -1.13 16 23 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 24 C -0.11 -0.74 10.05 -39.59 -0.40 -1.14 16 25 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 26 C -0.09 -0.74 9.70 -39.58 -0.38 -1.13 16 27 C -0.12 -1.70 9.64 -39.02 -0.38 -2.08 16 28 N -0.32 -6.15 3.82 -10.33 -0.04 -6.19 16 29 N -0.58 -8.23 9.36 60.35 0.56 -7.67 16 30 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.12 1.10 5.22 -52.49 -0.27 0.83 16 32 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.13 0.86 6.28 -52.49 -0.33 0.53 16 34 H 0.07 0.46 7.60 -51.93 -0.39 0.06 16 35 H 0.07 0.46 7.60 -51.93 -0.39 0.07 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 39 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.14 2.28 7.95 -52.49 -0.42 1.86 16 42 H 0.36 4.10 8.56 -181.36 -1.55 2.55 16 43 H 0.37 4.13 7.36 -181.36 -1.34 2.80 16 LS Contribution 387.24 15.07 5.84 5.84 Total: -1.00 -34.08 387.24 -12.91 -46.99 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.73 Total: 2.62 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -6.43 Total: -20.17 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 1.99 Total: -50.15 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: -0.20 Total: -3.73 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -2.35 Total: 2.26 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.08 -12.91 -46.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015086124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.530 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds