Wall clock time and date at job start Tue Mar 31 2020 07:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86799 * 119.99987 * 2 1 4 4 H 1.48505 * 109.46866 * 274.88739 * 3 2 1 5 5 H 1.48497 * 109.47284 * 34.88637 * 3 2 1 6 6 H 1.48499 * 109.47326 * 154.88788 * 3 2 1 7 7 C 1.39865 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00048 * 161.48007 * 7 2 1 9 9 C 1.41142 * 119.99808 * 341.47808 * 7 2 1 10 10 C 1.40890 * 120.15123 * 155.56054 * 9 7 2 11 11 C 1.36345 * 119.83146 * 180.02562 * 10 9 7 12 12 C 1.39562 * 120.16280 * 0.02562 * 11 10 9 13 13 N 1.38857 * 119.84321 * 179.97438 * 12 11 10 14 14 S 1.65605 * 119.99609 * 105.07067 * 13 12 11 15 15 O 1.42105 * 104.27158 * 180.81349 * 14 13 12 16 16 O 1.42101 * 104.27525 * 52.96566 * 14 13 12 17 17 C 1.81396 * 104.45285 * 296.88709 * 14 13 12 18 18 C 1.50704 * 109.46832 * 180.63999 * 17 14 13 19 19 C 1.38461 * 120.01690 * 90.00571 * 18 17 14 20 20 F 1.35105 * 120.01756 * 359.97438 * 19 18 17 21 21 C 1.38438 * 119.96057 * 179.97438 * 19 18 17 22 22 C 1.38225 * 120.00572 * 0.02562 * 21 19 18 23 23 C 1.38200 * 120.03421 * 359.97438 * 22 21 19 24 24 C 1.38291 * 120.01907 * 269.72303 * 18 17 14 25 25 Cl 1.73600 * 120.00276 * 0.02562 * 24 18 17 26 26 C 1.39568 * 120.31722 * 0.25383 * 12 11 10 27 27 C 1.36346 * 120.15673 * 359.48095 * 26 12 11 28 28 H 0.96992 * 120.00233 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.08224 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.91275 * 179.97438 * 11 10 9 31 31 H 0.96994 * 120.00157 * 285.08106 * 13 12 11 32 32 H 1.08993 * 109.47107 * 300.64682 * 17 14 13 33 33 H 1.09006 * 109.46607 * 60.64828 * 17 14 13 34 34 H 1.08010 * 119.99562 * 179.97438 * 21 19 18 35 35 H 1.07996 * 119.98220 * 180.02562 * 22 21 19 36 36 H 1.08003 * 119.98095 * 180.02562 * 23 22 21 37 37 H 1.08001 * 119.92333 * 179.72152 * 26 12 11 38 38 H 1.08001 * 120.07651 * 180.23471 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3872 2.1060 -1.3951 5 1 1.4960 2.6206 0.8007 6 1 3.5884 1.4126 0.5942 7 6 2.0084 -1.2112 0.0005 8 1 3.0464 -1.2356 -0.2965 9 6 1.3576 -2.4017 0.3894 10 6 1.8282 -3.6479 -0.0695 11 6 1.1942 -4.7938 0.3098 12 6 0.0813 -4.7344 1.1499 13 7 -0.5597 -5.9055 1.5316 14 16 -0.3566 -6.4988 3.0644 15 8 -1.1297 -7.6910 3.0839 16 8 -0.6787 -5.4030 3.9098 17 6 1.4126 -6.8855 3.1694 18 6 1.7223 -7.4548 4.5300 19 6 1.6479 -8.8209 4.7425 20 9 1.2971 -9.6443 3.7304 21 6 1.9332 -9.3427 5.9927 22 6 2.2916 -8.5000 7.0281 23 6 2.3659 -7.1364 6.8160 24 6 2.0867 -6.6135 5.5654 25 17 2.1868 -4.9011 5.2983 26 6 -0.3940 -3.5031 1.6036 27 6 0.2334 -2.3494 1.2368 28 1 -0.4850 0.8400 0.0004 29 1 2.6890 -3.6953 -0.7199 30 1 1.5536 -5.7498 -0.0415 31 1 -1.1262 -6.3762 0.9005 32 1 1.6711 -7.6156 2.4026 33 1 1.9930 -5.9757 3.0155 34 1 1.8749 -10.4083 6.1592 35 1 2.5145 -8.9074 8.0031 36 1 2.6464 -6.4788 7.6255 37 1 -1.2584 -3.4642 2.2499 38 1 -0.1332 -1.3975 1.5917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016579178.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:35 Heat of formation + Delta-G solvation = -77.897278 kcal Electronic energy + Delta-G solvation = -28364.575863 eV Core-core repulsion = 24046.111177 eV Total energy + Delta-G solvation = -4318.464686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 369.039 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.17947 -39.54714 -38.04438 -36.67432 -36.53463 -35.54779 -34.82020 -33.38034 -32.88365 -30.74271 -29.63146 -28.81678 -27.64524 -24.80222 -23.18551 -22.34798 -21.13583 -20.91216 -19.00111 -18.02706 -17.49619 -17.43590 -17.15202 -16.83242 -16.39142 -15.97746 -15.51513 -15.33124 -14.97940 -14.84562 -14.07898 -13.95862 -13.89179 -13.66978 -13.35721 -12.97132 -12.87477 -12.32453 -12.17153 -12.13002 -11.91666 -11.76915 -11.71863 -11.57382 -11.50909 -11.30212 -11.18004 -11.03823 -11.01439 -10.95124 -10.71661 -10.06109 -9.83112 -9.32533 -9.09660 -8.99806 -8.85980 -7.69485 -7.44286 -6.95995 -4.52318 0.28511 0.67076 0.90422 1.90492 2.54542 2.97298 2.98162 3.01223 3.06246 3.06641 3.16282 3.79189 3.84406 3.94069 4.21150 4.27804 4.41244 4.48696 4.70654 4.82563 4.99740 5.18135 5.42345 5.49845 5.62098 5.64959 5.73929 5.82826 6.07329 6.28657 6.33993 6.34529 6.84614 6.88312 7.06818 7.13257 7.37107 7.46231 7.81129 7.89924 8.05769 8.10612 8.46302 8.68735 8.80425 9.96405 Molecular weight = 369.04amu Principal moments of inertia in cm(-1) A = 0.015048 B = 0.003062 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.245968 B = 9141.815826 C =10076.906991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.446 4.446 8 H 0.082 0.918 9 C 0.120 3.880 10 C -0.225 4.225 11 C -0.076 4.076 12 C -0.043 4.043 13 N -1.029 6.029 14 S 2.592 3.408 15 O -0.972 6.972 16 O -0.934 6.934 17 C -0.597 4.597 18 C -0.112 4.112 19 C 0.123 3.877 20 F -0.122 7.122 21 C -0.151 4.151 22 C -0.075 4.075 23 C -0.120 4.120 24 C -0.004 4.004 25 Cl -0.022 7.022 26 C -0.068 4.068 27 C -0.168 4.168 28 H 0.285 0.715 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.406 0.594 32 H 0.143 0.857 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.100 0.900 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.048 -12.383 10.579 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.475 4.475 8 H 0.101 0.899 9 C 0.116 3.884 10 C -0.246 4.246 11 C -0.098 4.098 12 C -0.140 4.140 13 N -0.783 5.783 14 S 2.685 3.315 15 O -0.962 6.962 16 O -0.924 6.924 17 C -0.721 4.721 18 C -0.116 4.116 19 C 0.103 3.897 20 F -0.100 7.100 21 C -0.170 4.170 22 C -0.094 4.094 23 C -0.139 4.139 24 C -0.032 4.032 25 Cl 0.007 6.993 26 C -0.089 4.089 27 C -0.188 4.188 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.243 0.757 32 H 0.162 0.838 33 H 0.174 0.826 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.119 0.881 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.237 -12.177 11.294 17.140 hybrid contribution 0.733 0.495 -1.027 1.355 sum 4.971 -11.682 10.267 16.328 Atomic orbital electron populations 1.69855 1.07726 1.29852 1.32517 1.26016 0.94788 1.01730 0.92095 0.86262 0.80840 0.80300 0.79235 1.19386 1.19792 1.18203 1.19688 0.98557 0.91401 1.37838 0.89943 1.17745 0.90744 0.92093 0.87786 1.20621 1.04264 0.92533 1.07171 1.20515 0.94937 0.97094 0.97239 1.16655 1.00365 0.83921 1.13046 1.52264 1.60025 1.33813 1.32184 1.06180 0.76409 0.74127 0.74742 1.93544 1.66525 1.49731 1.86364 1.93601 1.80622 1.52058 1.66108 1.29728 1.30631 1.12094 0.99683 1.18924 1.06331 0.91964 0.94359 1.17370 0.99885 0.86544 0.85944 1.91562 1.89040 1.71021 1.58380 1.21259 1.02582 1.01890 0.91269 1.21043 0.96949 0.92256 0.99152 1.21185 1.01146 0.96004 0.95550 1.20806 1.00855 0.87226 0.94359 1.98471 1.96025 1.08462 1.96320 1.20769 0.98118 0.91878 0.98177 1.20986 0.99638 0.96954 1.01197 0.90384 0.88484 0.88966 0.75705 0.83838 0.82580 0.83561 0.83599 0.83588 0.88144 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.92 10.98 55.54 0.61 -18.31 16 2 C 0.07 1.74 5.12 -17.34 -0.09 1.65 16 3 Si 0.91 17.50 29.60 -169.99 -5.03 12.47 16 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 6 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 7 C -0.45 -11.01 9.03 -37.87 -0.34 -11.35 16 8 H 0.08 1.93 7.91 -52.49 -0.42 1.52 16 9 C 0.12 2.98 5.57 -106.79 -0.60 2.38 16 10 C -0.23 -5.06 9.74 -39.26 -0.38 -5.44 16 11 C -0.08 -1.56 9.90 -39.77 -0.39 -1.95 16 12 C -0.04 -0.90 5.69 -83.69 -0.48 -1.38 16 13 N -1.03 -18.47 5.55 32.51 0.18 -18.28 16 14 S 2.59 46.39 5.41 -107.50 -0.58 45.81 16 15 O -0.97 -18.77 18.08 -57.54 -1.04 -19.81 16 16 O -0.93 -19.09 16.67 -57.54 -0.96 -20.05 16 17 C -0.60 -9.03 5.53 36.01 0.20 -8.83 16 18 C -0.11 -1.60 5.15 -104.52 -0.54 -2.14 16 19 C 0.12 1.59 7.24 -39.43 -0.29 1.31 16 20 F -0.12 -1.68 16.48 2.25 0.04 -1.64 16 21 C -0.15 -1.44 10.03 -39.51 -0.40 -1.84 16 22 C -0.08 -0.61 10.04 -39.60 -0.40 -1.00 16 23 C -0.12 -1.19 9.83 -39.54 -0.39 -1.58 16 24 C 0.00 -0.06 6.31 -39.51 -0.25 -0.31 16 25 Cl -0.02 -0.34 27.05 -51.86 -1.40 -1.74 16 26 C -0.07 -1.58 9.15 -39.77 -0.36 -1.94 16 27 C -0.17 -4.17 8.64 -39.27 -0.34 -4.51 16 28 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 29 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 30 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.41 6.41 8.91 -34.48 -0.31 6.10 16 32 H 0.14 1.86 7.64 -51.93 -0.40 1.46 16 33 H 0.16 2.40 6.89 -51.92 -0.36 2.04 16 34 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 35 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 36 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.10 2.29 7.78 -52.49 -0.41 1.88 16 38 H 0.12 3.12 6.17 -52.49 -0.32 2.79 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -29.84 362.02 -11.23 -41.07 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -3.46 Total: 11.95 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: -5.04 Total: -36.93 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.79 Total: -36.60 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -2.00 Total: -39.86 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Atomic # 16 Polarization: 46.39 SS G_CDS: -0.58 Total: 45.81 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.40 Total: -1.74 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.84 -11.23 -41.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016579178.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.827 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds