Wall clock time and date at job start Tue Mar 31 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00249 * 2 1 4 4 H 1.48504 * 109.47161 * 240.00505 * 3 2 1 5 5 H 1.48509 * 109.46847 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47504 * 119.99857 * 3 2 1 7 7 C 1.37884 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99800 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99547 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46806 * 180.02562 * 9 7 2 11 11 C 1.46893 * 111.00100 * 169.99888 * 10 9 7 12 12 C 1.53236 * 109.34196 * 187.25443 * 11 10 9 13 13 N 1.47084 * 108.51910 * 306.16634 * 12 11 10 14 14 S 1.65598 * 120.88442 * 231.18239 * 13 12 11 15 15 O 1.42095 * 106.40575 * 336.46928 * 14 13 12 16 16 O 1.42098 * 106.40273 * 203.54381 * 14 13 12 17 17 C 1.76204 * 107.21444 * 90.00695 * 14 13 12 18 18 C 1.35506 * 120.05452 * 114.93846 * 17 14 13 19 19 C 1.39485 * 121.58713 * 180.02562 * 18 17 14 20 20 C 1.35515 * 121.58059 * 0.02562 * 19 18 17 21 21 C 1.41755 * 119.89969 * 0.02562 * 20 19 18 22 22 N 1.32339 * 131.00495 * 179.97438 * 21 20 19 23 23 S 1.55540 * 109.41900 * 180.02562 * 22 21 20 24 24 N 1.55545 * 100.20345 * 0.02562 * 23 22 21 25 25 C 1.32328 * 109.42359 * 0.02562 * 24 23 22 26 26 C 1.47081 * 118.23161 * 51.46248 * 13 12 11 27 27 C 1.46900 * 110.99696 * 294.30343 * 10 9 7 28 28 H 0.97002 * 120.00078 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47132 * 60.00009 * 9 7 2 30 30 H 1.08998 * 109.46803 * 299.99677 * 9 7 2 31 31 H 1.09005 * 109.49033 * 67.29443 * 11 10 9 32 32 H 1.09003 * 109.49185 * 307.21299 * 11 10 9 33 33 H 1.09007 * 109.62943 * 186.46282 * 12 11 10 34 34 H 1.09001 * 109.62987 * 65.87849 * 12 11 10 35 35 H 1.08005 * 119.20161 * 0.06216 * 18 17 14 36 36 H 1.07994 * 119.21162 * 180.30012 * 19 18 17 37 37 H 1.07998 * 120.04466 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.63252 * 68.25083 * 26 13 12 39 39 H 1.09008 * 109.62615 * 188.82767 * 26 13 12 40 40 H 1.08999 * 109.49391 * 292.70221 * 27 10 9 41 41 H 1.08993 * 109.49438 * 52.78967 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2056 -3.6157 0.0027 11 6 1.5213 -4.8933 0.2420 12 6 2.5638 -6.0028 0.4158 13 7 3.4616 -5.9869 -0.7491 14 16 3.7692 -7.3713 -1.6041 15 8 3.5172 -8.4540 -0.7190 16 8 5.0173 -7.1728 -2.2537 17 6 2.5567 -7.4777 -2.8782 18 6 2.9296 -7.3971 -4.1784 19 6 1.9967 -7.4769 -5.2124 20 6 0.6743 -7.6382 -4.9642 21 6 0.2122 -7.7291 -3.6272 22 7 -1.0079 -7.8847 -3.1388 23 16 -0.9425 -7.9196 -1.5852 24 7 0.5882 -7.7465 -1.3698 25 6 1.1889 -7.6435 -2.5444 26 6 4.0837 -4.7100 -1.1307 27 6 2.9767 -3.6501 -1.2472 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5575 -0.8879 30 1 0.6247 -2.5563 0.8920 31 1 0.8796 -5.1269 -0.6077 32 1 0.9161 -4.8181 1.1455 33 1 2.0632 -6.9690 0.4791 34 1 3.1395 -5.8253 1.3242 35 1 3.9744 -7.2686 -4.4199 36 1 2.3370 -7.4130 -6.2353 37 1 -0.0264 -7.6973 -5.7839 38 1 4.8027 -4.4106 -0.3681 39 1 4.5886 -4.8210 -2.0904 40 1 2.3149 -3.9011 -2.0761 41 1 3.4271 -2.6735 -1.4237 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019078682.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:54 Heat of formation + Delta-G solvation = 28.416885 kcal Electronic energy + Delta-G solvation = -29754.019935 eV Core-core repulsion = 25695.680802 eV Total energy + Delta-G solvation = -4058.339133 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 368.076 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.19329 -38.33340 -37.38909 -36.70615 -35.82737 -34.42195 -34.22093 -32.33292 -30.85855 -30.69102 -27.96011 -27.79699 -25.07360 -23.34334 -22.99167 -22.96470 -21.76972 -20.25215 -19.82697 -18.66924 -18.01704 -17.67073 -16.98303 -16.41024 -16.23044 -16.07315 -15.66195 -15.31965 -14.84401 -14.39969 -14.26443 -14.11945 -13.76644 -13.46850 -13.21865 -12.78718 -12.54687 -12.43140 -12.31545 -12.22784 -12.06867 -11.97369 -11.93250 -11.77547 -11.70549 -11.26669 -11.19018 -10.97245 -10.82991 -10.77680 -10.70278 -10.56573 -10.36818 -9.87377 -9.34687 -9.13444 -9.05919 -8.80189 -8.48005 -7.31140 -6.07806 -4.09601 -0.64933 0.39440 1.00994 1.13773 1.19381 1.47079 2.79400 3.07084 3.30314 3.34722 3.37504 3.69096 3.84154 4.25946 4.37932 4.41728 4.57490 4.69453 4.76746 4.80937 4.95295 5.16300 5.27982 5.36500 5.47087 5.60470 5.66475 5.69477 5.76065 5.76854 5.80192 5.82335 6.06282 6.23238 6.36113 6.42957 6.48399 6.50623 6.77468 7.21856 7.26070 7.73830 8.01632 8.12671 8.47822 8.97685 9.55046 11.03004 Molecular weight = 368.08amu Principal moments of inertia in cm(-1) A = 0.011057 B = 0.003544 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.756279 B = 7898.357892 C = 8746.876928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.195 3.805 10 N -0.532 5.532 11 C 0.048 3.952 12 C 0.130 3.870 13 N -0.988 5.988 14 S 2.695 3.305 15 O -0.945 6.945 16 O -0.959 6.959 17 C -0.632 4.632 18 C 0.033 3.967 19 C -0.128 4.128 20 C -0.004 4.004 21 C 0.059 3.941 22 N -0.588 5.588 23 S 0.832 5.168 24 N -0.594 5.594 25 C 0.144 3.856 26 C 0.123 3.877 27 C 0.052 3.948 28 H 0.262 0.738 29 H -0.013 1.013 30 H 0.031 0.969 31 H 0.018 0.982 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.021 0.979 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.260 -18.116 -8.851 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.258 5.258 11 C -0.083 4.083 12 C 0.004 3.996 13 N -0.828 5.828 14 S 2.783 3.217 15 O -0.935 6.935 16 O -0.950 6.950 17 C -0.723 4.723 18 C 0.007 3.993 19 C -0.153 4.153 20 C -0.029 4.029 21 C -0.100 4.100 22 N -0.440 5.440 23 S 0.879 5.121 24 N -0.444 5.444 25 C -0.015 4.015 26 C -0.002 4.002 27 C -0.078 4.078 28 H 0.071 0.929 29 H 0.005 0.995 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.176 0.824 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.039 0.961 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.352 -18.761 -6.736 19.937 hybrid contribution 0.234 1.357 -2.383 2.752 sum 0.586 -17.404 -9.119 19.657 Atomic orbital electron populations 1.69944 1.06122 1.26944 1.50842 1.24990 0.94848 0.99350 0.95347 0.86552 0.79425 0.82673 0.78695 1.20260 1.21408 1.20096 1.21114 0.93488 0.89843 1.50309 0.91766 1.19705 0.90004 0.87330 0.95951 1.62003 1.27869 1.02579 1.33306 1.22319 0.94888 0.90825 1.00237 1.21648 0.91111 0.99711 0.87098 1.57611 1.60134 1.24131 1.40875 1.02025 0.73306 0.73164 0.73184 1.93582 1.85651 1.51353 1.62890 1.93563 1.38713 1.85979 1.76716 1.30411 1.08196 1.18828 1.14866 1.20888 1.01583 0.86315 0.90477 1.20930 0.92396 1.01534 1.00417 1.20599 0.96159 0.94000 0.92181 1.21264 0.86103 1.05085 0.97526 1.72165 1.27853 1.25626 1.18364 1.78643 0.99736 1.38604 0.95125 1.72195 1.15118 1.26848 1.30239 1.20142 0.95139 1.00152 0.86061 1.21820 0.95651 0.81875 1.00819 1.22400 0.95099 0.99184 0.91109 0.92852 0.99475 0.95139 0.96344 0.90388 0.88648 0.90442 0.82398 0.83276 0.83540 0.89906 0.89730 0.96129 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.51 -13.82 8.41 -34.44 -0.29 -14.11 16 8 H 0.06 1.71 7.13 -52.49 -0.37 1.33 16 9 C 0.20 4.94 4.72 -4.97 -0.02 4.91 16 10 N -0.53 -11.06 4.62 -235.47 -1.09 -12.15 16 11 C 0.05 0.84 5.62 -3.71 -0.02 0.82 16 12 C 0.13 2.01 6.39 -3.60 -0.02 1.98 16 13 N -0.99 -15.03 3.32 -112.96 -0.38 -15.41 16 14 S 2.70 39.67 5.61 -107.50 -0.60 39.07 16 15 O -0.94 -15.98 16.73 -57.17 -0.96 -16.94 16 16 O -0.96 -14.58 15.68 -57.17 -0.90 -15.48 16 17 C -0.63 -8.33 5.93 -39.21 -0.23 -8.57 16 18 C 0.03 0.34 9.43 -40.09 -0.38 -0.04 16 19 C -0.13 -1.02 9.89 -40.09 -0.40 -1.42 16 20 C 0.00 -0.04 10.09 -39.21 -0.40 -0.43 16 21 C 0.06 0.75 7.16 -83.17 -0.60 0.15 16 22 N -0.59 -7.28 11.44 25.63 0.29 -6.99 16 23 S 0.83 8.92 23.60 -107.50 -2.54 6.38 16 24 N -0.59 -8.20 10.16 25.63 0.26 -7.94 16 25 C 0.14 2.02 6.86 -83.17 -0.57 1.45 16 26 C 0.12 1.87 6.56 -3.36 -0.02 1.85 16 27 C 0.05 0.96 5.47 -3.46 -0.02 0.94 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H -0.01 -0.34 8.12 -51.93 -0.42 -0.77 16 30 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 31 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 32 H 0.08 1.34 7.99 -51.93 -0.41 0.93 16 33 H 0.10 1.41 6.14 -51.92 -0.32 1.10 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.16 1.26 7.22 -52.48 -0.38 0.88 16 36 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.08 1.09 7.21 -51.92 -0.37 0.72 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.10 1.89 6.67 -51.93 -0.35 1.54 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -34.95 362.73 -12.50 -47.45 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -4.71 Total: -3.14 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -3.06 Total: -11.00 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -0.17 Total: -67.96 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.85 Total: -32.41 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 48.59 SS G_CDS: -3.14 Total: 45.45 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.95 -12.50 -47.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019078682.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.866 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds