Wall clock time and date at job start Tue Mar 31 2020 06:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47455 * 2 1 4 4 O 1.42894 * 109.47334 * 179.97438 * 3 2 1 5 5 C 1.35718 * 117.00442 * 180.02562 * 4 3 2 6 6 C 1.38999 * 119.91432 * 180.02562 * 5 4 3 7 7 C 1.37702 * 120.09018 * 180.02562 * 6 5 4 8 8 C 1.39754 * 119.90928 * 359.97438 * 7 6 5 9 9 C 1.47556 * 120.08813 * 179.97438 * 8 7 6 10 10 O 1.21625 * 120.00252 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99660 * 179.97438 * 9 8 7 12 12 N 1.40108 * 119.99701 * 180.02562 * 11 9 8 13 13 C 1.29870 * 119.99974 * 180.02562 * 12 11 9 14 14 C 1.47285 * 119.99962 * 180.02562 * 13 12 11 15 15 C 1.39691 * 120.19976 * 179.97438 * 14 13 12 16 16 C 1.37882 * 119.90487 * 180.02562 * 15 14 13 17 17 C 1.38521 * 120.32105 * 0.02729 * 16 15 14 18 18 C 1.38117 * 120.40876 * 359.69189 * 17 16 15 19 19 C 1.38721 * 120.08136 * 0.56182 * 18 17 16 20 20 O 1.35610 * 120.16148 * 179.74551 * 19 18 17 21 21 C 1.34805 * 116.99596 * 5.57343 * 20 19 18 22 22 H 1.07996 * 120.00251 * 354.92681 * 21 20 19 23 23 C 1.38649 * 119.99523 * 174.65012 * 21 20 19 24 24 N 1.31552 * 119.99995 * 0.27314 * 23 21 20 25 25 Si 1.86803 * 119.99565 * 180.27579 * 23 21 20 26 26 H 1.48507 * 109.46875 * 89.99952 * 25 23 21 27 27 H 1.48498 * 109.46690 * 209.99565 * 25 23 21 28 28 H 1.48497 * 109.47311 * 329.99934 * 25 23 21 29 29 C 1.39756 * 119.82074 * 0.25412 * 8 7 6 30 30 C 1.37699 * 119.90600 * 359.49426 * 29 8 7 31 31 H 1.08995 * 109.47336 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46876 * 300.00422 * 1 2 3 33 33 H 1.09005 * 109.46917 * 59.99449 * 1 2 3 34 34 H 1.08999 * 109.47150 * 240.00024 * 2 1 3 35 35 H 1.09002 * 109.47193 * 120.00110 * 2 1 3 36 36 H 1.09002 * 109.47423 * 59.99913 * 3 2 1 37 37 H 1.09005 * 109.47508 * 300.00189 * 3 2 1 38 38 H 1.07997 * 119.95279 * 359.97438 * 6 5 4 39 39 H 1.08000 * 120.04430 * 179.97438 * 7 6 5 40 40 H 0.96992 * 120.00523 * 0.02562 * 11 9 8 41 41 H 1.08001 * 119.99987 * 0.02562 * 13 12 11 42 42 H 1.07992 * 120.04540 * 0.04452 * 15 14 13 43 43 H 1.08005 * 119.83830 * 179.97438 * 16 15 14 44 44 H 1.08004 * 119.79741 * 179.97438 * 17 16 15 45 45 H 1.07998 * 119.96412 * 180.28333 * 18 17 16 46 46 H 0.96999 * 119.99739 * 179.97438 * 24 23 21 47 47 H 1.08005 * 120.04813 * 179.71852 * 29 8 7 48 48 H 1.08006 * 119.95174 * 180.25378 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0853 2.6516 0.0012 6 6 5.4735 2.7221 0.0013 7 6 6.1025 3.9471 0.0025 8 6 5.3432 5.1203 0.0030 9 6 6.0131 6.4350 0.0048 10 8 7.2277 6.4987 0.0054 11 7 5.2791 7.5654 0.0049 12 7 5.9152 8.8137 0.0060 13 6 5.2079 9.9029 0.0066 14 6 5.8766 11.2152 0.0072 15 6 5.1200 12.3894 0.0073 16 6 5.7523 13.6147 0.0074 17 6 7.1356 13.6878 0.0069 18 6 7.8965 12.5352 0.0127 19 6 7.2779 11.2935 0.0073 20 8 8.0235 10.1608 0.0078 21 6 9.3581 10.3067 0.1302 22 1 9.7947 11.2944 0.1398 23 6 10.1695 9.1888 0.2497 24 7 9.6375 7.9857 0.2382 25 14 12.0180 9.3912 0.4272 26 1 12.3688 9.4929 1.8667 27 1 12.7039 8.2162 -0.1677 28 1 12.4506 10.6255 -0.2761 29 6 3.9477 5.0451 0.0078 30 6 3.3264 3.8162 0.0014 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6767 1.9564 -0.8900 38 1 6.0595 1.8150 0.0013 39 1 7.1811 4.0010 0.0029 40 1 4.3105 7.5147 0.0041 41 1 4.1294 9.8464 0.0065 42 1 4.0413 12.3376 0.0075 43 1 5.1662 14.5219 0.0070 44 1 7.6221 14.6520 0.0065 45 1 8.9745 12.6005 0.0169 46 1 10.2053 7.2036 0.3214 47 1 3.3573 5.9494 0.0128 48 1 2.2480 3.7572 0.0009 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020197257.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:26 Heat of formation + Delta-G solvation = 8.788482 kcal Electronic energy + Delta-G solvation = -31445.366703 eV Core-core repulsion = 27047.353035 eV Total energy + Delta-G solvation = -4398.013669 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.157 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.46107 -39.09264 -38.84521 -37.15420 -36.26536 -35.48301 -34.32457 -32.42341 -32.04130 -31.10736 -30.31375 -29.24956 -28.34054 -26.97107 -25.21918 -23.82764 -23.25008 -22.55202 -21.49387 -21.43146 -20.10627 -19.86502 -18.53774 -17.80664 -17.56570 -16.66451 -16.59074 -16.36390 -15.92701 -14.93071 -14.81366 -14.62269 -14.40294 -14.28192 -14.25844 -14.01996 -13.88144 -13.58357 -13.52218 -13.40183 -12.99670 -12.68290 -12.62567 -12.57021 -12.36912 -12.24812 -11.83397 -11.58646 -11.53485 -11.51134 -11.10483 -10.96051 -10.90717 -10.74930 -10.74102 -10.62219 -10.33592 -9.44150 -9.23715 -9.18656 -8.93728 -8.84819 -8.63834 -8.33364 -7.64147 -6.89615 -6.14243 -3.78675 0.94093 1.22489 1.76373 2.50129 2.83606 3.05357 3.15724 3.23564 3.24332 3.28083 3.45412 4.09378 4.18147 4.37982 4.41356 4.57099 4.68183 4.74279 4.76172 4.90989 4.94843 4.95041 5.13008 5.18976 5.24447 5.29059 5.32496 5.40929 5.48391 5.54828 5.58426 5.62082 5.72103 5.74606 5.83231 5.93881 6.02519 6.11394 6.14597 6.30192 6.37287 6.55044 6.60369 6.79417 6.92382 7.14921 7.19412 7.29911 7.45334 7.48790 7.82255 7.90068 8.13211 8.41580 9.15193 9.24486 9.87655 10.90711 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.002089 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.751947 B =13399.148740 C =15868.198295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.056 3.944 4 O -0.314 6.314 5 C 0.146 3.854 6 C -0.158 4.158 7 C -0.019 4.019 8 C -0.153 4.153 9 C 0.547 3.453 10 O -0.431 6.431 11 N -0.592 5.592 12 N -0.179 5.179 13 C 0.094 3.906 14 C -0.147 4.147 15 C -0.043 4.043 16 C -0.230 4.230 17 C -0.062 4.062 18 C -0.237 4.237 19 C 0.164 3.836 20 O -0.114 6.114 21 C -0.409 4.409 22 H 0.089 0.911 23 C 0.045 3.955 24 N -0.787 5.787 25 Si 0.928 3.072 26 H -0.275 1.275 27 H -0.279 1.279 28 H -0.269 1.269 29 C -0.052 4.052 30 C -0.218 4.218 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.137 0.863 39 H 0.148 0.852 40 H 0.364 0.636 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.127 0.873 46 H 0.268 0.732 47 H 0.126 0.874 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.579 -10.569 -0.319 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.019 4.019 4 O -0.228 6.228 5 C 0.100 3.900 6 C -0.177 4.177 7 C -0.038 4.038 8 C -0.158 4.158 9 C 0.331 3.669 10 O -0.297 6.297 11 N -0.335 5.335 12 N 0.015 4.985 13 C -0.115 4.115 14 C -0.152 4.152 15 C -0.064 4.064 16 C -0.250 4.250 17 C -0.081 4.081 18 C -0.256 4.256 19 C 0.103 3.897 20 O -0.010 6.010 21 C -0.485 4.485 22 H 0.106 0.894 23 C -0.166 4.166 24 N -0.415 5.415 25 Si 0.753 3.247 26 H -0.201 1.201 27 H -0.204 1.204 28 H -0.194 1.194 29 C -0.071 4.071 30 C -0.236 4.236 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.201 0.799 41 H 0.116 0.884 42 H 0.130 0.870 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.145 0.855 46 H 0.078 0.922 47 H 0.143 0.857 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.669 -11.888 -0.327 19.671 hybrid contribution -0.799 0.628 0.106 1.022 sum -16.468 -11.260 -0.220 19.950 Atomic orbital electron populations 1.21695 0.94195 1.02588 1.02280 1.21489 0.96069 0.94794 1.03809 1.22918 0.78393 0.98929 1.01632 1.86015 1.21397 1.27157 1.88183 1.19210 0.92337 0.83961 0.94497 1.20407 0.91106 0.98724 1.07461 1.21157 1.01174 0.89688 0.91778 1.20027 0.93370 0.93971 1.08410 1.17912 0.87804 0.81992 0.79173 1.91162 1.11245 1.85642 1.41677 1.47035 1.07253 1.04158 1.75096 1.75889 1.22214 0.89120 1.11319 1.24220 0.95589 0.91828 0.99821 1.17323 0.90047 0.90175 1.17609 1.20620 0.97827 0.91092 0.96893 1.20378 0.94353 0.96404 1.13851 1.20826 0.93787 0.97003 0.96474 1.21113 1.00583 0.92000 1.11929 1.19445 0.90439 0.87167 0.92625 1.84179 1.18786 1.25155 1.72867 1.21340 0.79036 0.94566 1.53530 0.89405 1.25360 0.99571 0.94718 0.96994 1.70280 1.34953 0.96934 1.39328 0.85930 0.81940 0.78202 0.78599 1.20120 1.20424 1.19409 1.21101 0.93509 0.97276 0.95197 1.21101 0.99996 0.92081 1.10460 0.91683 0.92317 0.92312 0.90763 0.90762 0.91856 0.91847 0.84562 0.83465 0.79893 0.88440 0.86987 0.87619 0.87667 0.85522 0.92174 0.85651 0.85197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 37.16 0.37 -0.27 16 2 C -0.12 -0.72 6.30 -26.73 -0.17 -0.89 16 3 C 0.06 0.41 4.74 37.16 0.18 0.59 16 4 O -0.31 -3.33 10.12 -18.86 -0.19 -3.52 16 5 C 0.15 1.71 6.70 -39.02 -0.26 1.45 16 6 C -0.16 -1.98 9.97 -39.50 -0.39 -2.37 16 7 C -0.02 -0.28 9.59 -39.21 -0.38 -0.66 16 8 C -0.15 -2.40 5.87 -104.96 -0.62 -3.01 16 9 C 0.55 11.22 7.88 -12.46 -0.10 11.12 16 10 O -0.43 -11.18 15.57 5.26 0.08 -11.10 16 11 N -0.59 -11.35 6.21 30.47 0.19 -11.16 16 12 N -0.18 -4.17 8.90 32.13 0.29 -3.88 16 13 C 0.09 1.87 10.75 -14.70 -0.16 1.71 16 14 C -0.15 -3.11 5.88 -104.88 -0.62 -3.73 16 15 C -0.04 -0.76 9.79 -39.17 -0.38 -1.14 16 16 C -0.23 -3.92 10.03 -39.61 -0.40 -4.32 16 17 C -0.06 -1.13 10.03 -39.52 -0.40 -1.53 16 18 C -0.24 -5.23 9.16 -39.45 -0.36 -5.59 16 19 C 0.16 4.04 6.66 -38.61 -0.26 3.78 16 20 O -0.11 -3.27 7.64 0.55 0.00 -3.27 16 21 C -0.41 -11.66 9.49 30.88 0.29 -11.37 16 22 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 23 C 0.04 1.26 5.49 -17.52 -0.10 1.16 16 24 N -0.79 -23.60 12.57 55.48 0.70 -22.91 16 25 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 28 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 29 C -0.05 -0.63 9.53 -39.21 -0.37 -1.00 16 30 C -0.22 -2.33 9.01 -39.50 -0.36 -2.69 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 37 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 38 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.15 2.28 7.64 -52.49 -0.40 1.87 16 40 H 0.36 5.20 6.67 -182.60 -1.22 3.98 16 41 H 0.10 1.46 8.02 -52.49 -0.42 1.04 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 44 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 45 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.13 1.21 6.40 -52.48 -0.34 0.88 16 48 H 0.13 1.03 6.28 -52.48 -0.33 0.70 16 LS Contribution 411.07 15.07 6.19 6.19 Total: -1.00 -36.00 411.07 -9.24 -45.24 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.01 Total: 7.02 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -4.47 Total: -18.77 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 1.17 Total: -37.95 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.10 Total: -17.88 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.00 -9.24 -45.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020197257.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.033 kcal (2) G-P(sol) polarization free energy of solvation -36.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds