Wall clock time and date at job start Tue Mar 31 2020 06:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46788 * 2 1 4 4 N 1.46505 * 109.46985 * 240.00701 * 2 1 3 5 5 C 1.34770 * 120.00068 * 84.99658 * 4 2 1 6 6 O 1.21285 * 120.00185 * 359.97438 * 5 4 2 7 7 C 1.50707 * 119.99934 * 179.97438 * 5 4 2 8 8 O 1.42898 * 109.47235 * 179.97438 * 7 5 4 9 9 C 1.35895 * 117.00034 * 180.02562 * 8 7 5 10 10 C 1.38729 * 120.05809 * 359.72581 * 9 8 7 11 11 C 1.38145 * 119.94692 * 179.74277 * 10 9 8 12 12 C 1.38262 * 120.05212 * 0.51363 * 11 10 9 13 13 C 1.38266 * 120.11409 * 359.76422 * 12 11 10 14 14 C 1.38148 * 120.05564 * 359.97438 * 13 12 11 15 15 C 1.50699 * 109.47587 * 120.00259 * 2 1 3 16 16 O 1.21287 * 119.99771 * 120.00074 * 15 2 1 17 17 N 1.34777 * 119.99959 * 300.00239 * 15 2 1 18 18 C 1.39240 * 119.99847 * 175.70398 * 17 15 2 19 19 C 1.39481 * 119.83449 * 215.01642 * 18 17 15 20 20 C 1.36367 * 120.16834 * 179.75978 * 19 18 17 21 21 C 1.40874 * 119.83278 * 0.51797 * 20 19 18 22 22 C 1.41150 * 120.16729 * 179.71825 * 21 20 19 23 23 H 1.07996 * 119.99767 * 214.79788 * 22 21 20 24 24 C 1.39903 * 120.00045 * 34.79731 * 22 21 20 25 25 N 1.30877 * 120.00193 * 355.57248 * 24 22 21 26 26 Si 1.86795 * 120.00051 * 175.57296 * 24 22 21 27 27 H 1.48504 * 109.47179 * 59.99868 * 26 24 22 28 28 H 1.48494 * 109.47314 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47100 * 299.99901 * 26 24 22 30 30 C 1.40877 * 119.66740 * 359.73850 * 21 20 19 31 31 C 1.36369 * 119.82799 * 0.02562 * 30 21 20 32 32 H 1.09008 * 109.46881 * 299.99536 * 1 2 3 33 33 H 1.08997 * 109.47423 * 59.99216 * 1 2 3 34 34 H 1.08998 * 109.47014 * 179.97438 * 1 2 3 35 35 H 0.96998 * 119.99554 * 264.99614 * 4 2 1 36 36 H 1.08999 * 109.46680 * 60.00244 * 7 5 4 37 37 H 1.09000 * 109.47263 * 300.00228 * 7 5 4 38 38 H 1.08005 * 120.02380 * 0.02562 * 10 9 8 39 39 H 1.07995 * 119.97406 * 180.28069 * 11 10 9 40 40 H 1.08004 * 119.94657 * 179.74512 * 12 11 10 41 41 H 1.08006 * 119.97292 * 180.02562 * 13 12 11 42 42 H 1.07997 * 120.02519 * 179.97438 * 14 13 12 43 43 H 0.96997 * 120.00218 * 355.70166 * 17 15 2 44 44 H 1.08001 * 119.91234 * 0.02562 * 19 18 17 45 45 H 1.08003 * 120.08788 * 180.25295 * 20 19 18 46 46 H 0.97000 * 120.00029 * 180.02562 * 25 24 22 47 47 H 1.07990 * 120.08193 * 179.97438 * 30 21 20 48 48 H 1.08001 * 119.91941 * 179.97438 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0181 -2.3572 6 8 1.8580 1.1586 -2.4117 7 6 2.6498 -0.7282 -3.5876 8 8 2.6971 0.1899 -4.6816 9 6 3.1314 -0.2941 -5.8749 10 6 3.5098 -1.6239 -5.9891 11 6 3.9458 -2.1149 -7.2046 12 6 4.0155 -1.2794 -8.3040 13 6 3.6444 0.0478 -8.1914 14 6 3.2026 0.5422 -6.9795 15 6 2.0324 -0.7104 1.2304 16 8 2.7298 -1.6965 1.1190 17 7 1.7069 -0.2501 2.4545 18 6 2.0956 -0.9561 3.5899 19 6 1.2607 -0.9883 4.7068 20 6 1.6324 -1.6817 5.8206 21 6 2.8681 -2.3577 5.8453 22 6 3.2626 -3.0727 6.9966 23 1 4.3041 -3.1076 7.2800 24 6 2.3043 -3.7360 7.7706 25 7 1.0338 -3.6226 7.4777 26 14 2.8382 -4.7836 9.2221 27 1 3.5675 -3.9380 10.2012 28 1 1.6415 -5.3749 9.8726 29 1 3.7303 -5.8711 8.7461 30 6 3.7084 -2.3162 4.7153 31 6 3.3209 -1.6225 3.6070 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0276 -0.0005 35 1 2.2490 -1.6316 -1.1528 36 1 1.9776 -1.5505 -3.8327 37 1 3.6492 -1.1200 -3.3981 38 1 3.4591 -2.2760 -5.1296 39 1 4.2362 -3.1511 -7.2951 40 1 4.3606 -1.6640 -9.2524 41 1 3.6994 0.6983 -9.0518 42 1 2.9133 1.5790 -6.8920 43 1 1.2018 0.5731 2.5446 44 1 0.3154 -0.4661 4.6878 45 1 0.9831 -1.7091 6.6832 46 1 0.3694 -4.0823 8.0146 47 1 4.6573 -2.8316 4.7272 48 1 3.9641 -1.5894 2.7401 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023922891.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:41 Heat of formation + Delta-G solvation = -55.465973 kcal Electronic energy + Delta-G solvation = -30829.926688 eV Core-core repulsion = 26429.126737 eV Total energy + Delta-G solvation = -4400.799951 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.157 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.84732 -40.25457 -39.28885 -37.67145 -37.31821 -35.13508 -34.58117 -33.09723 -31.74505 -31.27239 -30.37068 -29.64564 -28.88728 -28.15574 -25.50971 -24.17786 -23.09607 -22.53757 -21.66520 -20.95863 -20.59271 -19.78923 -18.78779 -18.13586 -17.37296 -16.99158 -16.71704 -16.54225 -16.21172 -15.88618 -15.53874 -15.29197 -15.04795 -14.73412 -14.57907 -14.20358 -14.01938 -13.79196 -13.70462 -13.23649 -13.02760 -12.99988 -12.78417 -12.63882 -12.48779 -12.15645 -11.98354 -11.83373 -11.73357 -11.48685 -11.43702 -11.29115 -11.18864 -11.07345 -10.79025 -10.16216 -10.12514 -9.61851 -9.55130 -9.45947 -9.39909 -9.18495 -8.97020 -8.60500 -7.62467 -6.95771 -6.68088 -4.41100 0.94406 1.05634 2.12370 2.24686 2.41110 2.92170 3.02601 3.05759 3.08147 3.17150 3.28900 3.40577 3.61280 3.93286 4.22382 4.43573 4.52111 4.58725 4.62260 4.63815 4.76035 4.77549 4.88765 4.98977 4.99344 5.07614 5.24388 5.39206 5.56426 5.60075 5.61382 5.89709 5.93843 6.01182 6.05796 6.12178 6.14881 6.34619 6.35437 6.63681 6.81559 6.94844 6.99310 7.11426 7.19123 7.21942 7.56243 7.63074 7.74965 7.87027 7.98855 8.14381 8.23961 8.49674 8.59998 8.86188 8.91939 10.22814 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.021311 B = 0.001412 C = 0.001353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.578731 B =19818.684927 C =20691.779901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 H 0.113 0.887 4 N -0.706 5.706 5 C 0.521 3.479 6 O -0.519 6.519 7 C 0.042 3.958 8 O -0.289 6.289 9 C 0.130 3.870 10 C -0.211 4.211 11 C -0.080 4.080 12 C -0.160 4.160 13 C -0.081 4.081 14 C -0.149 4.149 15 C 0.496 3.504 16 O -0.529 6.529 17 N -0.641 5.641 18 C -0.003 4.003 19 C -0.117 4.117 20 C -0.141 4.141 21 C 0.102 3.898 22 C -0.460 4.460 23 H 0.076 0.924 24 C 0.070 3.930 25 N -0.810 5.810 26 Si 0.916 3.084 27 H -0.265 1.265 28 H -0.279 1.279 29 H -0.266 1.266 30 C -0.207 4.207 31 C -0.083 4.083 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.412 0.588 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.398 0.602 44 H 0.092 0.908 45 H 0.133 0.867 46 H 0.279 0.721 47 H 0.096 0.904 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.120 4.681 -23.679 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.020 3.980 3 H 0.131 0.869 4 N -0.361 5.361 5 C 0.305 3.695 6 O -0.394 6.394 7 C -0.036 4.036 8 O -0.202 6.202 9 C 0.084 3.916 10 C -0.230 4.230 11 C -0.098 4.098 12 C -0.178 4.178 13 C -0.099 4.099 14 C -0.168 4.168 15 C 0.282 3.718 16 O -0.406 6.406 17 N -0.283 5.283 18 C -0.095 4.095 19 C -0.137 4.137 20 C -0.161 4.161 21 C 0.099 3.901 22 C -0.491 4.491 23 H 0.094 0.906 24 C -0.145 4.145 25 N -0.438 5.438 26 Si 0.741 3.259 27 H -0.190 1.190 28 H -0.204 1.204 29 H -0.191 1.191 30 C -0.227 4.227 31 C -0.103 4.103 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.250 0.750 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.232 0.768 44 H 0.110 0.890 45 H 0.150 0.850 46 H 0.090 0.910 47 H 0.114 0.886 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.143 4.943 -23.660 24.172 hybrid contribution 0.008 -0.957 0.778 1.233 sum -0.135 3.987 -22.882 23.227 Atomic orbital electron populations 1.22131 0.92648 1.03408 1.03578 1.20771 0.95735 0.98000 0.83477 0.86879 1.45541 1.67428 1.15059 1.08121 1.19932 0.78312 0.87358 0.83896 1.90755 1.48589 1.15423 1.84586 1.22437 1.03299 0.92446 0.85457 1.86146 1.80962 1.37145 1.15917 1.19082 0.94615 0.92470 0.85415 1.21317 1.07052 0.94805 0.99808 1.20977 0.96931 0.99775 0.92081 1.21099 1.03568 0.94121 0.99049 1.20998 0.96700 0.95603 0.96578 1.20489 1.05045 1.00308 0.90944 1.20397 0.81709 0.85086 0.84647 1.90685 1.37339 1.26476 1.86126 1.42876 1.55142 1.25811 1.04510 1.17247 0.96812 1.07941 0.87460 1.20308 0.97091 1.02079 0.94258 1.21195 0.99351 0.97738 0.97859 1.17739 0.91570 0.89023 0.91758 1.19487 0.94897 1.27465 1.07240 0.90581 1.25886 0.94493 0.96406 0.97745 1.69748 1.01248 1.36216 1.36539 0.86235 0.78847 0.80213 0.80593 1.19001 1.20390 1.19081 1.20802 1.01824 1.06278 0.93754 1.20378 0.94054 0.98209 0.97679 0.90632 0.90925 0.91522 0.75033 0.88662 0.88534 0.85287 0.85651 0.85868 0.85268 0.84971 0.76785 0.88982 0.84982 0.91012 0.88570 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.38 37.16 0.35 -1.26 16 2 C 0.13 1.53 2.98 -69.08 -0.21 1.32 16 3 H 0.11 1.33 7.58 -51.93 -0.39 0.94 16 4 N -0.71 -7.78 4.95 -54.93 -0.27 -8.06 16 5 C 0.52 6.05 7.87 -10.99 -0.09 5.97 16 6 O -0.52 -7.93 16.16 -14.35 -0.23 -8.17 16 7 C 0.04 0.37 5.22 36.01 0.19 0.56 16 8 O -0.29 -3.29 9.67 -39.32 -0.38 -3.67 16 9 C 0.13 1.28 6.69 -39.22 -0.26 1.02 16 10 C -0.21 -1.71 9.04 -39.43 -0.36 -2.06 16 11 C -0.08 -0.56 10.04 -39.61 -0.40 -0.96 16 12 C -0.16 -1.09 10.04 -39.56 -0.40 -1.48 16 13 C -0.08 -0.58 10.04 -39.60 -0.40 -0.97 16 14 C -0.15 -1.34 9.99 -39.43 -0.39 -1.73 16 15 C 0.50 7.74 7.05 -10.99 -0.08 7.66 16 16 O -0.53 -10.03 13.26 5.55 0.07 -9.96 16 17 N -0.64 -10.32 5.17 -9.74 -0.05 -10.37 16 18 C 0.00 -0.05 6.31 -83.57 -0.53 -0.58 16 19 C -0.12 -2.55 9.90 -39.79 -0.39 -2.94 16 20 C -0.14 -3.51 8.62 -39.26 -0.34 -3.85 16 21 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 22 C -0.46 -11.99 9.02 -37.85 -0.34 -12.33 16 23 H 0.08 1.90 7.85 -52.49 -0.41 1.49 16 24 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 25 N -0.81 -20.56 10.60 55.55 0.59 -19.97 16 26 Si 0.92 18.58 29.56 -169.99 -5.03 13.56 16 27 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 28 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 29 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 30 C -0.21 -5.07 9.74 -39.26 -0.38 -5.45 16 31 C -0.08 -1.91 8.61 -39.79 -0.34 -2.25 16 32 H 0.07 0.66 7.67 -51.92 -0.40 0.26 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.41 4.17 7.79 -40.82 -0.32 3.85 16 36 H 0.10 0.59 7.67 -51.93 -0.40 0.20 16 37 H 0.10 0.66 7.65 -51.93 -0.40 0.27 16 38 H 0.13 0.80 6.30 -52.48 -0.33 0.47 16 39 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.12 0.57 8.06 -52.48 -0.42 0.15 16 41 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 42 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.40 4.97 8.37 -40.82 -0.34 4.63 16 44 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 45 H 0.13 3.40 6.13 -52.48 -0.32 3.08 16 46 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 47 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 48 H 0.11 2.40 6.22 -52.49 -0.33 2.07 16 LS Contribution 408.36 15.07 6.15 6.15 Total: -1.00 -32.44 408.36 -10.35 -42.79 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -6.16 Total: 13.35 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -5.05 Total: -15.66 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.27 Total: -38.40 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.54 Total: -21.79 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.44 -10.35 -42.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023922891.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.675 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds