Wall clock time and date at job start Tue Mar 31 2020 06:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00024 * 2 1 4 4 H 1.48497 * 109.47338 * 239.99898 * 3 2 1 5 5 H 1.48500 * 109.47454 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47153 * 120.00250 * 3 2 1 7 7 C 1.37873 * 119.99455 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99330 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00448 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47119 * 180.02562 * 9 7 2 11 11 C 1.46904 * 110.99836 * 170.00077 * 10 9 7 12 12 C 1.53238 * 109.33973 * 187.24985 * 11 10 9 13 13 N 1.47079 * 108.52274 * 306.16999 * 12 11 10 14 14 S 1.65599 * 120.88191 * 231.18738 * 13 12 11 15 15 O 1.42106 * 106.40227 * 336.45403 * 14 13 12 16 16 O 1.42100 * 106.40324 * 203.53916 * 14 13 12 17 17 C 1.76199 * 107.21905 * 89.99747 * 14 13 12 18 18 C 1.38249 * 119.94204 * 90.00037 * 17 14 13 19 19 C 1.38194 * 120.11663 * 180.02562 * 18 17 14 20 20 C 1.38705 * 120.06422 * 0.02562 * 19 18 17 21 21 C 1.38974 * 119.81550 * 359.88869 * 20 19 18 22 22 C 1.38188 * 119.94209 * 269.72183 * 17 14 13 23 23 O 1.36114 * 120.78412 * 180.22542 * 21 20 19 24 24 C 1.43181 * 116.69072 * 342.61229 * 23 21 20 25 25 C 1.53471 * 108.23062 * 46.29142 * 24 23 21 26 26 O 1.36111 * 119.40638 * 179.64491 * 20 19 18 27 27 C 1.47085 * 118.23780 * 51.45569 * 13 12 11 28 28 C 1.46897 * 110.99712 * 294.29538 * 10 9 7 29 29 H 0.97003 * 119.99671 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47059 * 59.99725 * 9 7 2 31 31 H 1.09005 * 109.47165 * 299.99955 * 9 7 2 32 32 H 1.08995 * 109.49639 * 67.28854 * 11 10 9 33 33 H 1.09001 * 109.49247 * 307.20680 * 11 10 9 34 34 H 1.08996 * 109.63284 * 186.45908 * 12 11 10 35 35 H 1.09008 * 109.63040 * 65.87822 * 12 11 10 36 36 H 1.08005 * 119.94353 * 0.04112 * 18 17 14 37 37 H 1.08001 * 119.97311 * 180.02562 * 19 18 17 38 38 H 1.07999 * 119.97212 * 0.02562 * 22 17 14 39 39 H 1.08994 * 109.71321 * 165.97132 * 24 23 21 40 40 H 1.08991 * 109.71370 * 286.60747 * 24 23 21 41 41 H 1.09005 * 109.70896 * 59.96607 * 25 24 23 42 42 H 1.09003 * 109.70926 * 180.58796 * 25 24 23 43 43 H 1.09002 * 109.62783 * 68.25528 * 27 13 12 44 44 H 1.08997 * 109.62638 * 188.83552 * 27 13 12 45 45 H 1.08994 * 109.49930 * 292.70736 * 28 10 9 46 46 H 1.08999 * 109.49048 * 52.76821 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0017 10 7 2.2055 -3.6157 -0.0015 11 6 1.5208 -4.8936 0.2356 12 6 2.5632 -6.0034 0.4086 13 7 3.4618 -5.9860 -0.7556 14 16 3.7699 -7.3692 -1.6123 15 8 3.5173 -8.4532 -0.7287 16 8 5.0186 -7.1700 -2.2607 17 6 2.5583 -7.4739 -2.8873 18 6 2.8034 -6.8998 -4.1209 19 6 1.8555 -6.9792 -5.1233 20 6 0.6549 -7.6350 -4.8940 21 6 0.4094 -8.2136 -3.6545 22 6 1.3672 -8.1345 -2.6543 23 8 -0.7600 -8.8657 -3.4094 24 6 -1.8430 -8.6039 -4.3086 25 6 -1.3047 -8.6803 -5.7438 26 8 -0.2723 -7.6989 -5.8884 27 6 4.0844 -4.7086 -1.1351 28 6 2.9774 -3.6486 -1.2508 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5562 -0.8919 31 1 0.6239 -2.5575 0.8880 32 1 0.8798 -5.1260 -0.6148 33 1 0.9150 -4.8196 1.1387 34 1 2.0626 -6.9697 0.4702 35 1 3.1382 -5.8272 1.3177 36 1 3.7375 -6.3886 -4.3016 37 1 2.0495 -6.5303 -6.0862 38 1 1.1798 -8.5857 -1.6911 39 1 -2.6252 -9.3501 -4.1693 40 1 -2.2456 -7.6089 -4.1195 41 1 -0.8965 -9.6735 -5.9309 42 1 -2.1092 -8.4739 -6.4497 43 1 4.8028 -4.4103 -0.3715 44 1 4.5898 -4.8184 -2.0945 45 1 2.3162 -3.8984 -2.0805 46 1 3.4277 -2.6715 -1.4259 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024084001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:57 Heat of formation + Delta-G solvation = -98.043459 kcal Electronic energy + Delta-G solvation = -32254.591666 eV Core-core repulsion = 27851.556273 eV Total energy + Delta-G solvation = -4403.035393 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.128 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.64899 -38.36757 -38.09743 -37.68877 -37.28774 -35.85892 -34.41477 -32.32722 -31.72982 -31.14583 -30.75403 -28.97112 -27.83549 -25.34129 -25.08596 -23.49193 -23.30042 -21.90149 -21.64176 -20.18105 -19.39734 -18.65992 -18.07359 -17.69917 -17.37129 -16.64798 -16.38660 -15.87003 -15.73743 -15.38139 -14.86755 -14.81837 -14.57299 -14.43965 -14.28298 -14.19362 -14.11256 -13.88535 -13.77734 -13.46752 -13.20543 -12.51898 -12.36405 -12.25092 -12.07798 -11.99937 -11.86639 -11.78014 -11.51855 -11.30713 -11.25776 -11.05752 -10.84991 -10.82936 -10.77707 -10.59305 -10.38246 -9.87782 -9.33769 -9.16063 -8.84523 -8.60721 -8.46758 -7.30695 -6.06604 -4.08379 0.27811 0.58660 0.94154 2.50893 2.77352 2.86850 3.24279 3.31309 3.35755 3.38445 3.73773 3.74792 4.17218 4.24708 4.36676 4.38759 4.45187 4.71304 4.75006 4.83202 4.91882 4.92867 5.00635 5.03406 5.28916 5.38934 5.40080 5.50070 5.53861 5.65358 5.70498 5.72978 5.78371 5.80941 6.03540 6.13907 6.18695 6.32250 6.41215 6.46696 6.51178 6.73802 6.96304 7.23019 7.28265 7.74616 8.02568 8.13325 8.48565 8.98903 9.56226 11.04154 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.009593 B = 0.003135 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.194818 B = 8927.894715 C =10479.137884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.532 5.532 11 C 0.040 3.960 12 C 0.128 3.872 13 N -0.993 5.993 14 S 2.696 3.304 15 O -0.957 6.957 16 O -0.955 6.955 17 C -0.674 4.674 18 C -0.013 4.013 19 C -0.134 4.134 20 C 0.104 3.896 21 C 0.029 3.971 22 C -0.010 4.010 23 O -0.303 6.303 24 C 0.018 3.982 25 C 0.018 3.982 26 O -0.303 6.303 27 C 0.124 3.876 28 C 0.050 3.950 29 H 0.262 0.738 30 H -0.010 1.010 31 H 0.031 0.969 32 H 0.025 0.975 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.151 0.849 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.126 0.874 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.025 0.975 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.953 -18.845 -10.422 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.258 5.258 11 C -0.090 4.090 12 C 0.002 3.998 13 N -0.833 5.833 14 S 2.785 3.215 15 O -0.948 6.948 16 O -0.946 6.946 17 C -0.760 4.760 18 C -0.032 4.032 19 C -0.153 4.153 20 C 0.058 3.942 21 C -0.017 4.017 22 C -0.030 4.030 23 O -0.218 6.218 24 C -0.057 4.057 25 C -0.057 4.057 26 O -0.216 6.216 27 C -0.001 4.001 28 C -0.080 4.080 29 H 0.071 0.929 30 H 0.008 0.992 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.168 0.832 37 H 0.163 0.837 38 H 0.169 0.831 39 H 0.144 0.856 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.144 0.856 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.043 0.957 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.199 -19.264 -9.915 21.667 hybrid contribution -1.330 1.044 -1.283 2.122 sum -1.529 -18.220 -11.198 21.440 Atomic orbital electron populations 1.69951 1.06104 1.26925 1.50831 1.24988 0.94852 0.99343 0.95371 0.86555 0.79422 0.82697 0.78686 1.20248 1.21429 1.20126 1.21116 0.93492 0.89877 1.50317 0.91774 1.19716 0.90002 0.87237 0.96112 1.62004 1.27828 1.02495 1.33434 1.22399 0.94824 0.90984 1.00790 1.21618 0.91394 0.98975 0.87764 1.57702 1.60216 1.24392 1.40945 1.01922 0.73701 0.72775 0.73055 1.93566 1.85998 1.51575 1.63635 1.93569 1.38856 1.85664 1.76489 1.31008 1.15625 1.13051 1.16311 1.20695 0.98543 0.93675 0.90295 1.20560 0.90667 1.02758 1.01331 1.19175 0.90436 0.98211 0.86423 1.18852 0.88660 1.00998 0.93199 1.20092 0.90057 0.94728 0.98112 1.86347 1.18588 1.64188 1.52685 1.23693 0.88823 1.04492 0.88710 1.23739 0.90927 0.92539 0.98495 1.86351 1.37138 1.55632 1.42503 1.21823 0.95670 0.81738 1.00868 1.22423 0.95133 0.99183 0.91236 0.92865 0.99227 0.95091 0.95635 0.90100 0.89754 0.89953 0.83185 0.83712 0.83101 0.85633 0.90022 0.90093 0.85628 0.89945 0.89672 0.95724 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -13.73 8.41 -34.44 -0.29 -14.02 16 8 H 0.06 1.69 7.13 -52.48 -0.37 1.32 16 9 C 0.19 4.85 4.72 -4.98 -0.02 4.83 16 10 N -0.53 -10.75 4.62 -235.47 -1.09 -11.84 16 11 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 12 C 0.13 1.79 6.53 -3.60 -0.02 1.76 16 13 N -0.99 -13.98 3.32 -112.97 -0.38 -14.36 16 14 S 2.70 37.24 5.70 -107.50 -0.61 36.63 16 15 O -0.96 -14.77 16.05 -57.17 -0.92 -15.69 16 16 O -0.96 -14.60 16.05 -57.17 -0.92 -15.52 16 17 C -0.67 -8.76 5.97 -39.60 -0.24 -9.00 16 18 C -0.01 -0.15 9.51 -39.59 -0.38 -0.53 16 19 C -0.13 -1.54 9.96 -39.43 -0.39 -1.93 16 20 C 0.10 1.27 6.49 -39.14 -0.25 1.01 16 21 C 0.03 0.36 6.49 -39.14 -0.25 0.11 16 22 C -0.01 -0.13 9.44 -39.43 -0.37 -0.50 16 23 O -0.30 -3.45 10.42 -32.89 -0.34 -3.79 16 24 C 0.02 0.13 7.26 37.40 0.27 0.41 16 25 C 0.02 0.12 7.26 37.40 0.27 0.40 16 26 O -0.30 -3.24 10.42 -32.88 -0.34 -3.58 16 27 C 0.12 1.80 6.56 -3.36 -0.02 1.78 16 28 C 0.05 0.90 5.47 -3.46 -0.02 0.88 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 31 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 34 H 0.08 1.01 7.22 -51.93 -0.37 0.64 16 35 H 0.08 1.12 8.14 -51.92 -0.42 0.69 16 36 H 0.15 1.52 7.61 -52.48 -0.40 1.12 16 37 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 38 H 0.15 1.80 7.60 -52.49 -0.40 1.40 16 39 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.09 1.06 7.21 -51.93 -0.37 0.69 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.10 1.84 6.67 -51.93 -0.35 1.50 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -34.36 384.90 -11.38 -45.74 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -6.46 Total: -1.39 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -1.84 Total: -12.72 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.73 Total: -51.57 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -2.52 Total: -38.58 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 37.24 SS G_CDS: -0.61 Total: 36.63 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.36 -11.38 -45.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024084001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.305 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds