Wall clock time and date at job start Tue Mar 31 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.50991 * 2 1 4 4 C 1.52875 * 109.62754 * 240.00726 * 2 1 3 5 5 N 1.47154 * 108.60692 * 187.89802 * 4 2 1 6 6 C 1.34779 * 120.97900 * 230.50080 * 5 4 2 7 7 O 1.21550 * 120.00054 * 5.52586 * 6 5 4 8 8 C 1.47851 * 119.99814 * 185.52599 * 6 5 4 9 9 C 1.39581 * 120.14105 * 218.49995 * 8 6 5 10 10 C 1.37952 * 119.84895 * 179.97438 * 9 8 6 11 11 C 1.38360 * 120.14607 * 359.97438 * 10 9 8 12 12 S 1.76202 * 119.85221 * 179.74394 * 11 10 9 13 13 O 1.42104 * 106.40246 * 203.54298 * 12 11 10 14 14 O 1.42100 * 106.40122 * 336.45769 * 12 11 10 15 15 N 1.65603 * 107.21785 * 90.00284 * 12 11 10 16 16 C 1.46495 * 120.00009 * 65.00160 * 15 12 11 17 17 C 1.50699 * 109.46892 * 165.00344 * 16 15 12 18 18 H 1.07999 * 120.00232 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00037 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99805 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00375 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46975 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47297 * 119.99773 * 21 19 17 24 24 H 1.48493 * 109.47469 * 240.00237 * 21 19 17 25 25 C 1.38358 * 120.29473 * 0.02562 * 11 10 9 26 26 C 1.37957 * 120.14418 * 0.02562 * 25 11 10 27 27 C 1.47143 * 118.03600 * 50.22757 * 5 4 2 28 28 C 1.53299 * 108.38643 * 309.71298 * 27 5 4 29 29 O 1.42959 * 109.21736 * 52.30396 * 28 27 5 30 30 H 1.08990 * 109.47364 * 299.89985 * 1 2 3 31 31 H 1.09001 * 109.46635 * 59.90131 * 1 2 3 32 32 H 1.08997 * 109.46746 * 179.89545 * 1 2 3 33 33 H 1.08997 * 109.61692 * 68.07612 * 4 2 1 34 34 H 1.08999 * 109.52469 * 307.66210 * 4 2 1 35 35 H 1.07993 * 120.07395 * 0.02562 * 9 8 6 36 36 H 1.07997 * 119.92836 * 179.97438 * 10 9 8 37 37 H 0.97003 * 119.99725 * 244.99698 * 15 12 11 38 38 H 1.08999 * 109.46603 * 284.99700 * 16 15 12 39 39 H 1.08996 * 109.47823 * 44.99854 * 16 15 12 40 40 H 0.97000 * 119.99741 * 179.97438 * 20 19 17 41 41 H 1.07998 * 119.92688 * 179.97438 * 25 11 10 42 42 H 1.08002 * 120.07445 * 180.02562 * 26 25 11 43 43 H 1.08999 * 109.68444 * 69.44099 * 27 5 4 44 44 H 1.09000 * 109.68072 * 189.99370 * 27 5 4 45 45 H 1.08999 * 109.51358 * 172.22630 * 28 27 5 46 46 H 1.09003 * 109.51013 * 292.38324 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0435 -0.7198 -1.2471 5 7 3.5024 -0.8749 -1.1325 6 6 4.3207 -0.5016 -2.1362 7 8 3.8669 0.0627 -3.1125 8 6 5.7705 -0.7784 -2.0497 9 6 6.6923 0.1590 -2.5187 10 6 8.0436 -0.1053 -2.4346 11 6 8.4859 -1.2962 -1.8864 12 16 10.2135 -1.6287 -1.7890 13 8 10.3473 -3.0421 -1.7275 14 8 10.8325 -0.8323 -2.7899 15 7 10.7437 -1.0450 -0.3327 16 6 10.2578 -1.6390 0.9152 17 6 11.1402 -1.2024 2.0562 18 1 11.9792 -0.5483 1.8703 19 6 10.8763 -1.6380 3.3374 20 7 9.8542 -2.4341 3.5639 21 14 11.9704 -1.0975 4.7517 22 1 13.0429 -0.2090 4.2362 23 1 11.1575 -0.3616 5.7532 24 1 12.5803 -2.2914 5.3901 25 6 7.5775 -2.2296 -1.4197 26 6 6.2233 -1.9783 -1.4988 27 6 4.0417 -1.4439 0.1128 28 6 3.4312 -0.6838 1.2958 29 8 2.0075 -0.6758 1.1658 30 1 -0.3633 0.5122 0.8908 31 1 -0.3632 0.5154 -0.8891 32 1 -0.3633 -1.0277 -0.0019 33 1 1.8054 -0.1316 -2.1333 34 1 1.5747 -1.7011 -1.3203 35 1 6.3483 1.0894 -2.9456 36 1 8.7579 0.6189 -2.7974 37 1 11.3760 -0.3099 -0.3060 38 1 9.2353 -1.3098 1.1001 39 1 10.2805 -2.7256 0.8335 40 1 9.6688 -2.7409 4.4652 41 1 7.9293 -3.1574 -0.9933 42 1 5.5152 -2.7075 -1.1338 43 1 3.7775 -2.4993 0.1788 44 1 5.1261 -1.3348 0.1267 45 1 3.7089 -1.1766 2.2275 46 1 3.8021 0.3412 1.3005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024840645.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:42 Heat of formation + Delta-G solvation = -118.143101 kcal Electronic energy + Delta-G solvation = -31423.315513 eV Core-core repulsion = 27019.408534 eV Total energy + Delta-G solvation = -4403.906979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.128 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.02605 -39.28001 -38.19994 -36.83455 -35.44944 -35.23195 -34.72786 -33.47683 -32.24148 -31.62515 -31.23839 -29.13709 -27.13327 -26.83061 -24.33294 -23.68541 -22.92126 -22.54115 -21.62753 -19.96835 -19.23268 -17.97243 -17.69928 -17.33452 -17.04486 -16.51403 -16.08819 -16.00304 -15.70453 -15.44952 -15.12659 -15.02917 -14.72735 -14.46262 -14.40013 -13.78172 -13.66179 -13.55333 -13.23726 -13.10740 -12.91877 -12.69151 -12.65332 -12.28280 -12.20698 -12.09072 -11.90038 -11.72145 -11.64529 -11.58035 -11.38267 -11.04305 -11.03741 -10.86461 -10.75684 -10.49446 -10.21317 -10.16642 -9.51035 -9.47830 -9.15630 -8.99999 -8.92976 -8.33356 -6.26647 -4.30854 0.30747 0.87466 1.16206 2.30857 2.45612 3.19068 3.27154 3.28638 3.31546 3.35628 3.65564 4.01723 4.14930 4.27803 4.28529 4.44453 4.57947 4.61210 4.70101 4.71859 4.78092 4.85750 5.00081 5.10366 5.11056 5.15471 5.26040 5.30372 5.35320 5.40868 5.43458 5.46309 5.56279 5.73368 5.78605 5.85083 5.94460 6.00300 6.07124 6.32506 6.60706 6.78422 6.89255 7.16686 7.23276 7.69237 7.71494 7.71818 8.07979 8.73365 9.34660 10.83695 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.008813 B = 0.003015 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.214820 B = 9285.764934 C =11833.132503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.063 0.937 4 C 0.083 3.917 5 N -0.610 5.610 6 C 0.564 3.436 7 O -0.530 6.530 8 C -0.087 4.087 9 C -0.090 4.090 10 C -0.023 4.023 11 C -0.647 4.647 12 S 2.689 3.311 13 O -0.958 6.958 14 O -0.976 6.976 15 N -1.101 6.101 16 C 0.245 3.755 17 C -0.529 4.529 18 H 0.067 0.933 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.903 3.097 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.282 1.282 25 C -0.017 4.017 26 C -0.115 4.115 27 C 0.058 3.942 28 C 0.048 3.952 29 O -0.376 6.376 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.412 0.588 38 H 0.022 0.978 39 H 0.040 0.960 40 H 0.265 0.735 41 H 0.152 0.848 42 H 0.139 0.861 43 H 0.085 0.915 44 H 0.110 0.890 45 H 0.115 0.885 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.838 3.708 -6.745 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.014 3.986 3 H 0.081 0.919 4 C -0.039 4.039 5 N -0.344 5.344 6 C 0.353 3.647 7 O -0.407 6.407 8 C -0.090 4.090 9 C -0.110 4.110 10 C -0.042 4.042 11 C -0.732 4.732 12 S 2.776 3.224 13 O -0.948 6.948 14 O -0.966 6.966 15 N -0.864 5.864 16 C 0.122 3.878 17 C -0.569 4.569 18 H 0.085 0.915 19 C -0.141 4.141 20 N -0.528 5.528 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.208 1.208 25 C -0.036 4.036 26 C -0.134 4.134 27 C -0.064 4.064 28 C -0.029 4.029 29 O -0.295 6.295 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.156 0.844 36 H 0.165 0.835 37 H 0.247 0.753 38 H 0.040 0.960 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.169 0.831 42 H 0.157 0.843 43 H 0.103 0.897 44 H 0.128 0.872 45 H 0.133 0.867 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.985 3.246 -7.634 18.009 hybrid contribution 0.236 0.846 1.050 1.369 sum -15.749 4.092 -6.584 17.554 Atomic orbital electron populations 1.21723 0.92006 1.03340 1.02983 1.22405 0.95741 0.95497 0.84949 0.91874 1.22309 0.79358 1.02247 1.00021 1.48037 1.06824 1.63064 1.16508 1.18428 0.86059 0.77839 0.82382 1.90783 1.76877 1.41327 1.31724 1.20073 0.92626 0.96358 0.99952 1.21240 0.92373 0.99229 0.98138 1.20906 0.96065 0.94451 0.92790 1.31530 1.27851 1.02839 1.10961 1.02013 0.73349 0.74131 0.72953 1.93579 1.85070 1.29535 1.86567 1.93540 1.74425 1.70840 1.57771 1.55451 1.57946 1.50642 1.22334 1.19113 0.95057 0.94141 0.79482 1.21222 1.13380 1.30819 0.91473 0.91518 1.24956 0.95480 0.94783 0.98894 1.69932 1.27835 1.33244 1.21792 0.86365 0.80365 0.78545 0.81702 1.19591 1.20857 1.20753 1.21000 0.92300 0.97906 0.92434 1.21525 0.96443 0.96559 0.98885 1.22942 1.01303 0.98745 0.83447 1.23029 0.80842 1.00556 0.98517 1.87984 1.21059 1.77318 1.43127 0.91245 0.90712 0.91443 0.87962 0.90326 0.84372 0.83502 0.75329 0.96040 0.94233 0.92489 0.83072 0.84285 0.89701 0.87162 0.86741 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.57 37.16 0.36 -0.55 16 2 C 0.07 0.63 3.38 -26.79 -0.09 0.54 16 3 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 4 C 0.08 0.77 5.92 -3.75 -0.02 0.75 16 5 N -0.61 -6.61 3.03 -173.65 -0.53 -7.13 16 6 C 0.56 7.42 7.36 -12.33 -0.09 7.33 16 7 O -0.53 -8.35 16.37 5.32 0.09 -8.26 16 8 C -0.09 -1.13 5.17 -104.96 -0.54 -1.68 16 9 C -0.09 -1.18 9.63 -39.19 -0.38 -1.55 16 10 C -0.02 -0.31 9.50 -39.64 -0.38 -0.69 16 11 C -0.65 -9.82 5.95 -39.49 -0.24 -10.06 16 12 S 2.69 46.44 5.74 -107.50 -0.62 45.82 16 13 O -0.96 -19.19 16.73 -57.17 -0.96 -20.15 16 14 O -0.98 -17.74 17.27 -57.17 -0.99 -18.73 16 15 N -1.10 -20.55 5.99 -11.66 -0.07 -20.62 16 16 C 0.25 5.60 5.98 -5.20 -0.03 5.57 16 17 C -0.53 -13.40 9.27 -34.44 -0.32 -13.72 16 18 H 0.07 1.63 7.65 -52.49 -0.40 1.23 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -23.88 13.29 55.43 0.74 -23.15 16 21 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 C -0.02 -0.25 9.50 -39.64 -0.38 -0.62 16 26 C -0.11 -1.42 7.41 -39.19 -0.29 -1.71 16 27 C 0.06 0.55 5.00 -3.54 -0.02 0.53 16 28 C 0.05 0.44 6.99 37.31 0.26 0.70 16 29 O -0.38 -3.81 10.38 -35.23 -0.37 -4.18 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 1.00 7.06 -51.93 -0.37 0.63 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.14 1.59 8.05 -52.49 -0.42 1.17 16 36 H 0.15 1.75 7.61 -52.49 -0.40 1.35 16 37 H 0.41 7.02 8.54 -34.47 -0.29 6.72 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.04 0.98 7.75 -51.93 -0.40 0.57 16 40 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 41 H 0.15 2.09 7.60 -52.49 -0.40 1.69 16 42 H 0.14 1.37 6.37 -52.49 -0.33 1.03 16 43 H 0.08 0.69 8.01 -51.93 -0.42 0.28 16 44 H 0.11 1.09 4.91 -51.93 -0.26 0.83 16 45 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -33.13 392.73 -10.26 -43.39 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.21 Total: 5.83 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -2.25 Total: -13.66 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.14 Total: -50.90 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -2.22 Total: -51.31 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 46.44 SS G_CDS: -0.62 Total: 45.82 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.13 -10.26 -43.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024840645.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.749 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds