Wall clock time and date at job start Tue Mar 31 2020 06:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.50991 * 2 1 4 4 C 1.52875 * 109.62754 * 240.00726 * 2 1 3 5 5 N 1.47154 * 108.60692 * 187.89802 * 4 2 1 6 6 C 1.34779 * 120.97900 * 230.50080 * 5 4 2 7 7 O 1.21550 * 120.00054 * 5.52586 * 6 5 4 8 8 C 1.47851 * 119.99814 * 185.52599 * 6 5 4 9 9 C 1.39581 * 120.14105 * 218.49995 * 8 6 5 10 10 C 1.37952 * 119.84895 * 179.97438 * 9 8 6 11 11 C 1.38360 * 120.14607 * 359.97438 * 10 9 8 12 12 S 1.76202 * 119.85221 * 179.74394 * 11 10 9 13 13 O 1.42104 * 106.40246 * 203.54298 * 12 11 10 14 14 O 1.42100 * 106.40122 * 336.45769 * 12 11 10 15 15 N 1.65603 * 107.21785 * 90.00284 * 12 11 10 16 16 C 1.46495 * 120.00009 * 65.00160 * 15 12 11 17 17 C 1.50699 * 109.46892 * 165.00344 * 16 15 12 18 18 H 1.07999 * 120.00232 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00037 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99805 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00375 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46975 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47297 * 119.99773 * 21 19 17 24 24 H 1.48493 * 109.47469 * 240.00237 * 21 19 17 25 25 C 1.38358 * 120.29473 * 0.02562 * 11 10 9 26 26 C 1.37957 * 120.14418 * 0.02562 * 25 11 10 27 27 C 1.47143 * 118.03600 * 50.22757 * 5 4 2 28 28 C 1.53299 * 108.38643 * 309.71298 * 27 5 4 29 29 O 1.42959 * 109.21736 * 52.30396 * 28 27 5 30 30 H 1.08990 * 109.47364 * 299.89985 * 1 2 3 31 31 H 1.09001 * 109.46635 * 59.90131 * 1 2 3 32 32 H 1.08997 * 109.46746 * 179.89545 * 1 2 3 33 33 H 1.08997 * 109.61692 * 68.07612 * 4 2 1 34 34 H 1.08999 * 109.52469 * 307.66210 * 4 2 1 35 35 H 1.07993 * 120.07395 * 0.02562 * 9 8 6 36 36 H 1.07997 * 119.92836 * 179.97438 * 10 9 8 37 37 H 0.97003 * 119.99725 * 244.99698 * 15 12 11 38 38 H 1.08999 * 109.46603 * 284.99700 * 16 15 12 39 39 H 1.08996 * 109.47823 * 44.99854 * 16 15 12 40 40 H 0.97000 * 119.99741 * 179.97438 * 20 19 17 41 41 H 1.07998 * 119.92688 * 179.97438 * 25 11 10 42 42 H 1.08002 * 120.07445 * 180.02562 * 26 25 11 43 43 H 1.08999 * 109.68444 * 69.44099 * 27 5 4 44 44 H 1.09000 * 109.68072 * 189.99370 * 27 5 4 45 45 H 1.08999 * 109.51358 * 172.22630 * 28 27 5 46 46 H 1.09003 * 109.51013 * 292.38324 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0435 -0.7198 -1.2471 5 7 3.5024 -0.8749 -1.1325 6 6 4.3207 -0.5016 -2.1362 7 8 3.8669 0.0627 -3.1125 8 6 5.7705 -0.7784 -2.0497 9 6 6.6923 0.1590 -2.5187 10 6 8.0436 -0.1053 -2.4346 11 6 8.4859 -1.2962 -1.8864 12 16 10.2135 -1.6287 -1.7890 13 8 10.3473 -3.0421 -1.7275 14 8 10.8325 -0.8323 -2.7899 15 7 10.7437 -1.0450 -0.3327 16 6 10.2578 -1.6390 0.9152 17 6 11.1402 -1.2024 2.0562 18 1 11.9792 -0.5483 1.8703 19 6 10.8763 -1.6380 3.3374 20 7 9.8542 -2.4341 3.5639 21 14 11.9704 -1.0975 4.7517 22 1 13.0429 -0.2090 4.2362 23 1 11.1575 -0.3616 5.7532 24 1 12.5803 -2.2914 5.3901 25 6 7.5775 -2.2296 -1.4197 26 6 6.2233 -1.9783 -1.4988 27 6 4.0417 -1.4439 0.1128 28 6 3.4312 -0.6838 1.2958 29 8 2.0075 -0.6758 1.1658 30 1 -0.3633 0.5122 0.8908 31 1 -0.3632 0.5154 -0.8891 32 1 -0.3633 -1.0277 -0.0019 33 1 1.8054 -0.1316 -2.1333 34 1 1.5747 -1.7011 -1.3203 35 1 6.3483 1.0894 -2.9456 36 1 8.7579 0.6189 -2.7974 37 1 11.3760 -0.3099 -0.3060 38 1 9.2353 -1.3098 1.1001 39 1 10.2805 -2.7256 0.8335 40 1 9.6688 -2.7409 4.4652 41 1 7.9293 -3.1574 -0.9933 42 1 5.5152 -2.7075 -1.1338 43 1 3.7775 -2.4993 0.1788 44 1 5.1261 -1.3348 0.1267 45 1 3.7089 -1.1766 2.2275 46 1 3.8021 0.3412 1.3005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024840645.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:41 Heat of formation + Delta-G solvation = -142.079649 kcal Electronic energy + Delta-G solvation = -31424.353480 eV Core-core repulsion = 27019.408534 eV Total energy + Delta-G solvation = -4404.944945 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.128 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.96520 -40.18570 -39.20873 -38.32187 -36.94847 -36.45543 -36.12722 -34.18423 -34.09828 -32.66653 -32.29643 -29.88504 -28.69784 -27.93330 -25.31026 -24.53641 -24.46290 -23.85822 -22.41305 -20.88892 -20.62903 -19.31368 -18.92231 -18.63837 -17.93798 -17.70024 -17.38075 -17.23427 -16.87844 -16.51049 -16.32672 -15.98509 -15.92899 -15.59191 -15.36923 -15.18429 -14.73312 -14.64927 -14.49761 -14.22310 -14.12558 -13.97888 -13.72028 -13.56219 -13.22655 -13.19632 -13.13565 -13.01488 -12.77894 -12.77250 -12.50432 -12.47190 -12.25503 -12.12941 -12.04565 -11.82942 -11.37285 -11.32968 -11.14903 -10.84160 -10.57384 -10.20868 -10.08838 -9.77634 -8.22206 -6.32472 -0.83164 -0.50563 0.10602 1.27407 1.45779 1.48623 1.56216 1.59261 2.06747 2.36553 2.45277 2.66542 2.76118 3.07959 3.13296 3.27282 3.56852 3.65343 3.69431 3.84477 3.93970 4.00477 4.06949 4.10714 4.21467 4.30010 4.38403 4.41845 4.59656 4.62788 4.67759 4.74581 4.75746 4.81124 4.85635 4.88678 4.95341 4.97303 5.13749 5.27905 5.31476 5.35293 5.54180 5.78157 5.97252 6.00920 6.07804 6.33068 6.72984 6.80814 7.36666 8.88651 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.008813 B = 0.003015 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.214820 B = 9285.764934 C =11833.132503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.072 3.928 3 H 0.056 0.944 4 C 0.081 3.919 5 N -0.605 5.605 6 C 0.564 3.436 7 O -0.561 6.561 8 C -0.089 4.089 9 C -0.091 4.091 10 C -0.025 4.025 11 C -0.656 4.656 12 S 2.708 3.292 13 O -0.989 6.989 14 O -0.983 6.983 15 N -1.101 6.101 16 C 0.257 3.743 17 C -0.548 4.548 18 H 0.072 0.928 19 C 0.013 3.987 20 N -0.920 5.920 21 Si 0.965 3.035 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.282 1.282 25 C -0.031 4.031 26 C -0.104 4.104 27 C 0.056 3.944 28 C 0.047 3.953 29 O -0.387 6.387 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.153 0.847 36 H 0.163 0.837 37 H 0.419 0.581 38 H 0.019 0.981 39 H 0.016 0.984 40 H 0.268 0.732 41 H 0.150 0.850 42 H 0.165 0.835 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.127 0.873 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.795 4.264 -6.319 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.014 3.986 3 H 0.074 0.926 4 C -0.040 4.040 5 N -0.337 5.337 6 C 0.353 3.647 7 O -0.440 6.440 8 C -0.092 4.092 9 C -0.111 4.111 10 C -0.045 4.045 11 C -0.744 4.744 12 S 2.799 3.201 13 O -0.979 6.979 14 O -0.974 6.974 15 N -0.863 5.863 16 C 0.133 3.867 17 C -0.588 4.588 18 H 0.090 0.910 19 C -0.187 4.187 20 N -0.559 5.559 21 Si 0.790 3.210 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.208 1.208 25 C -0.050 4.050 26 C -0.123 4.123 27 C -0.066 4.066 28 C -0.030 4.030 29 O -0.306 6.306 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.171 0.829 36 H 0.181 0.819 37 H 0.255 0.745 38 H 0.036 0.964 39 H 0.034 0.966 40 H 0.077 0.923 41 H 0.168 0.832 42 H 0.183 0.817 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.145 0.855 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.902 3.800 -7.190 18.756 hybrid contribution 0.429 0.683 0.877 1.191 sum -16.473 4.483 -6.313 18.202 Atomic orbital electron populations 1.21732 0.90201 1.03888 1.03795 1.22502 0.97117 0.94825 0.84177 0.92597 1.22450 0.78370 1.03049 1.00167 1.48131 1.07421 1.61930 1.16258 1.18410 0.86114 0.77742 0.82478 1.90770 1.77279 1.42968 1.33024 1.20237 0.92875 0.96526 0.99555 1.21450 0.92050 0.99860 0.97732 1.21111 0.96817 0.94107 0.92416 1.31105 1.26007 1.04230 1.13049 1.01176 0.73869 0.73035 0.72070 1.93536 1.86088 1.31498 1.86770 1.93523 1.75426 1.70829 1.57587 1.55266 1.58741 1.50698 1.21588 1.18730 0.94694 0.92817 0.80477 1.21631 1.13842 1.30841 0.92467 0.91033 1.25762 0.96725 0.94855 1.01372 1.70025 1.29195 1.34195 1.22470 0.85391 0.78786 0.78101 0.78676 1.18868 1.20295 1.20779 1.21125 0.93132 0.97887 0.92899 1.21718 0.95994 0.96751 0.97835 1.23067 1.01019 0.99737 0.82785 1.23083 0.80610 1.00398 0.98944 1.87981 1.21368 1.77488 1.43737 0.91133 0.89225 0.91009 0.88457 0.88944 0.82900 0.81936 0.74506 0.96352 0.96604 0.92270 0.83186 0.81715 0.87888 0.87625 0.85541 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.57 71.98 0.69 -0.82 16 2 C 0.07 1.14 3.38 30.55 0.10 1.24 16 3 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 4 C 0.08 1.38 5.92 86.21 0.51 1.89 16 5 N -0.61 -12.15 3.03 -821.58 -2.49 -14.64 16 6 C 0.56 14.13 7.36 86.79 0.64 14.77 16 7 O -0.56 -17.17 16.37 -3.87 -0.06 -17.24 16 8 C -0.09 -2.20 5.17 -20.09 -0.10 -2.30 16 9 C -0.09 -2.26 9.63 22.53 0.22 -2.04 16 10 C -0.03 -0.66 9.50 22.23 0.21 -0.45 16 11 C -0.66 -19.61 5.95 22.33 0.13 -19.48 16 12 S 2.71 93.80 5.74 -56.49 -0.32 93.48 16 13 O -0.99 -40.33 16.73 -128.00 -2.14 -42.47 16 14 O -0.98 -35.29 17.27 -128.00 -2.21 -37.50 16 15 N -1.10 -41.27 5.99 -190.81 -1.14 -42.41 16 16 C 0.26 11.90 5.98 85.63 0.51 12.41 16 17 C -0.55 -27.73 9.27 25.60 0.24 -27.50 16 18 H 0.07 3.45 7.65 -2.91 -0.02 3.43 16 19 C 0.01 0.69 5.46 84.65 0.46 1.15 16 20 N -0.92 -49.48 13.29 21.45 0.28 -49.19 16 21 Si 0.97 40.41 29.54 68.60 2.03 42.44 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 23 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 25 C -0.03 -0.87 9.50 22.23 0.21 -0.66 16 26 C -0.10 -2.43 7.41 22.53 0.17 -2.27 16 27 C 0.06 0.95 5.00 86.36 0.43 1.38 16 28 C 0.05 0.80 6.99 72.08 0.50 1.30 16 29 O -0.39 -7.21 10.38 -148.98 -1.55 -8.76 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 1.78 7.06 -2.39 -0.02 1.76 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.15 3.30 8.05 -2.91 -0.02 3.27 16 36 H 0.16 3.65 7.61 -2.91 -0.02 3.63 16 37 H 0.42 14.21 8.54 -96.74 -0.83 13.38 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.02 0.81 7.75 -2.39 -0.02 0.79 16 40 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 41 H 0.15 4.19 7.60 -2.91 -0.02 4.17 16 42 H 0.17 2.90 6.37 -2.91 -0.02 2.88 16 43 H 0.10 1.42 8.01 -2.39 -0.02 1.40 16 44 H 0.11 1.92 4.91 -2.39 -0.01 1.91 16 45 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -69.39 392.73 -2.49 -71.88 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.19 Total: 25.79 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 4.92 Total: -21.39 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -3.34 Total: -106.24 kcal Atomic # 8 Polarization: -100.00 SS G_CDS: -5.96 Total: -105.97 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Atomic # 16 Polarization: 93.80 SS G_CDS: -0.32 Total: 93.48 kcal Total: -69.39 -2.49 -71.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024840645.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.200 kcal (2) G-P(sol) polarization free energy of solvation -69.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds