Wall clock time and date at job start Tue Mar 31 2020 06:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.50936 * 2 1 4 4 C 1.53711 * 109.44453 * 120.28656 * 2 1 3 5 5 N 1.47152 * 108.16154 * 172.37561 * 4 2 1 6 6 C 1.34779 * 120.98074 * 129.43546 * 5 4 2 7 7 O 1.21558 * 119.99542 * 3.53183 * 6 5 4 8 8 C 1.47836 * 120.00014 * 183.52756 * 6 5 4 9 9 C 1.39579 * 120.14230 * 131.54215 * 8 6 5 10 10 C 1.37961 * 119.85115 * 180.25631 * 9 8 6 11 11 C 1.38359 * 120.14459 * 359.51718 * 10 9 8 12 12 S 1.76198 * 119.85143 * 180.25499 * 11 10 9 13 13 O 1.42108 * 106.40207 * 203.53906 * 12 11 10 14 14 O 1.42100 * 106.40445 * 336.46047 * 12 11 10 15 15 N 1.65598 * 107.21892 * 90.00203 * 12 11 10 16 16 C 1.46508 * 119.99965 * 65.00064 * 15 12 11 17 17 C 1.50694 * 109.46988 * 165.00063 * 16 15 12 18 18 H 1.07996 * 120.00156 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99953 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99481 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99930 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46989 * 90.00297 * 21 19 17 23 23 H 1.48500 * 109.46889 * 209.99723 * 21 19 17 24 24 H 1.48495 * 109.47548 * 329.99984 * 21 19 17 25 25 C 1.38353 * 120.29327 * 0.23673 * 11 10 9 26 26 C 1.37960 * 120.14764 * 359.97438 * 25 11 10 27 27 C 1.47144 * 118.03577 * 309.16105 * 5 4 2 28 28 C 1.53290 * 108.38894 * 50.78593 * 27 5 4 29 29 O 1.42955 * 109.51528 * 239.90231 * 2 1 3 30 30 H 1.08997 * 109.46986 * 180.09649 * 1 2 3 31 31 H 1.08994 * 109.47269 * 300.10050 * 1 2 3 32 32 H 1.08999 * 109.47071 * 60.10155 * 1 2 3 33 33 H 1.09003 * 109.83439 * 52.69457 * 4 2 1 34 34 H 1.09003 * 109.74321 * 292.00670 * 4 2 1 35 35 H 1.07998 * 120.07949 * 0.03224 * 9 8 6 36 36 H 1.08002 * 119.92800 * 179.79476 * 10 9 8 37 37 H 0.96996 * 120.00518 * 244.99550 * 15 12 11 38 38 H 1.09005 * 109.46512 * 284.99647 * 16 15 12 39 39 H 1.08996 * 109.47141 * 44.99906 * 16 15 12 40 40 H 0.97003 * 119.99326 * 179.97438 * 20 19 17 41 41 H 1.08005 * 119.92915 * 180.02562 * 25 11 10 42 42 H 1.07995 * 120.07949 * 180.02562 * 26 25 11 43 43 H 1.08997 * 109.68225 * 170.51310 * 27 5 4 44 44 H 1.09012 * 109.68188 * 291.06112 * 27 5 4 45 45 H 1.09003 * 109.51255 * 67.62290 * 28 27 5 46 46 H 1.08995 * 109.51602 * 187.72317 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0417 -0.7310 1.2516 5 7 3.5012 -0.8766 1.1332 6 6 4.3193 -0.5051 2.1378 7 8 3.8516 -0.1020 3.1849 8 6 5.7854 -0.5880 1.9662 9 6 6.5934 0.4980 2.3068 10 6 7.9603 0.4161 2.1393 11 6 8.5315 -0.7429 1.6444 12 16 10.2788 -0.8415 1.4399 13 8 10.5118 -1.8382 0.4541 14 8 10.7447 0.4955 1.3186 15 7 10.9057 -1.4286 2.8557 16 6 10.5820 -2.7894 3.2914 17 6 11.5384 -3.2099 4.3775 18 1 12.3103 -2.5315 4.7096 19 6 11.4279 -4.4606 4.9471 20 7 10.4875 -5.2865 4.5429 21 14 12.6139 -4.9821 6.2929 22 1 12.0580 -4.6029 7.6167 23 1 12.8065 -6.4536 6.2400 24 1 13.9198 -4.3044 6.0918 25 6 7.7367 -1.8247 1.3096 26 6 6.3680 -1.7544 1.4681 27 6 4.0407 -1.4456 -0.1120 28 6 3.4313 -0.6848 -1.2951 29 8 2.0076 -0.6757 -1.1658 30 1 -0.3633 -1.0276 0.0017 31 1 -0.3633 0.5154 0.8890 32 1 -0.3633 0.5122 -0.8909 33 1 1.5789 -1.7155 1.3201 34 1 1.8018 -0.1493 2.1417 35 1 6.1492 1.4017 2.6972 36 1 8.5864 1.2568 2.3994 37 1 11.4872 -0.8716 3.3965 38 1 9.5622 -2.8150 3.6754 39 1 10.6693 -3.4720 2.4462 40 1 10.4101 -6.1666 4.9435 41 1 8.1888 -2.7267 0.9241 42 1 5.7488 -2.5997 1.2069 43 1 5.1252 -1.3374 -0.1254 44 1 3.7757 -2.5009 -0.1785 45 1 3.8031 0.3399 -1.2993 46 1 3.7099 -1.1769 -2.2268 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024840650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:47 Heat of formation + Delta-G solvation = -118.667551 kcal Electronic energy + Delta-G solvation = -31156.480472 eV Core-core repulsion = 26752.550752 eV Total energy + Delta-G solvation = -4403.929720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.128 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.04241 -39.32288 -38.23236 -36.83289 -35.44999 -35.25917 -34.70064 -33.51749 -32.21094 -31.65195 -31.25973 -29.22734 -27.16296 -26.80154 -24.36151 -23.74685 -22.95323 -22.51797 -21.69565 -19.99636 -19.23012 -18.01612 -17.74155 -17.31530 -17.11093 -16.57181 -16.10016 -15.99890 -15.74848 -15.51525 -15.20761 -15.06032 -14.77005 -14.47339 -14.43076 -13.77433 -13.60245 -13.56814 -13.32724 -13.05689 -13.04147 -12.73810 -12.64093 -12.33636 -12.19205 -12.15350 -11.88634 -11.73254 -11.69173 -11.63046 -11.40312 -11.14549 -10.99190 -10.85627 -10.76736 -10.59769 -10.22411 -10.14916 -9.49080 -9.45630 -9.16313 -9.00076 -8.96767 -8.30224 -6.22636 -4.27226 0.34093 0.88693 1.15182 2.26318 2.40725 3.21317 3.23004 3.27366 3.29848 3.32946 3.63908 3.98379 4.14762 4.19083 4.31039 4.43282 4.49080 4.51643 4.63899 4.65627 4.70703 4.85905 4.88816 5.05482 5.12998 5.14374 5.15354 5.25556 5.32485 5.32556 5.36211 5.41665 5.48607 5.66875 5.77693 5.83028 5.93398 5.99265 6.04074 6.34800 6.60064 6.66897 6.84552 7.21045 7.26360 7.69349 7.71283 7.75188 8.11207 8.76638 9.38079 10.87743 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.013289 B = 0.002347 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.506681 B =11926.785221 C =12915.015209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 H 0.064 0.936 4 C 0.083 3.917 5 N -0.611 5.611 6 C 0.564 3.436 7 O -0.525 6.525 8 C -0.083 4.083 9 C -0.095 4.095 10 C -0.021 4.021 11 C -0.650 4.650 12 S 2.689 3.311 13 O -0.958 6.958 14 O -0.976 6.976 15 N -1.100 6.100 16 C 0.245 3.755 17 C -0.530 4.530 18 H 0.066 0.934 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.015 4.015 26 C -0.116 4.116 27 C 0.058 3.942 28 C 0.049 3.951 29 O -0.377 6.377 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.412 0.588 38 H 0.022 0.978 39 H 0.040 0.960 40 H 0.266 0.734 41 H 0.152 0.848 42 H 0.138 0.862 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.057 0.943 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.293 9.958 -10.642 22.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 H 0.082 0.918 4 C -0.039 4.039 5 N -0.346 5.346 6 C 0.352 3.648 7 O -0.401 6.401 8 C -0.086 4.086 9 C -0.114 4.114 10 C -0.040 4.040 11 C -0.734 4.734 12 S 2.776 3.224 13 O -0.948 6.948 14 O -0.967 6.967 15 N -0.863 5.863 16 C 0.122 3.878 17 C -0.570 4.570 18 H 0.085 0.915 19 C -0.142 4.142 20 N -0.528 5.528 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.034 4.034 26 C -0.135 4.135 27 C -0.065 4.065 28 C -0.029 4.029 29 O -0.295 6.295 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.247 0.753 38 H 0.040 0.960 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.169 0.831 42 H 0.156 0.844 43 H 0.126 0.874 44 H 0.103 0.897 45 H 0.076 0.924 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.451 10.001 -11.033 22.941 hybrid contribution 0.274 -0.287 1.623 1.671 sum -17.177 9.713 -9.410 21.862 Atomic orbital electron populations 1.21733 0.91969 1.03420 1.03013 1.22584 0.95764 0.95334 0.84799 0.91793 1.22487 0.79295 1.02295 0.99831 1.48051 1.06811 1.63204 1.16495 1.18449 0.86326 0.76822 0.83164 1.90813 1.76855 1.46092 1.26309 1.20055 0.92589 0.96138 0.99812 1.21192 0.93311 0.98185 0.98710 1.20898 0.94967 0.96014 0.92105 1.31521 1.28490 1.00934 1.12486 1.01990 0.73375 0.73013 0.74022 1.93578 1.83673 1.59993 1.57542 1.93537 1.79573 1.37151 1.86390 1.55442 1.61942 1.25915 1.43029 1.19121 0.96706 0.75518 0.96464 1.21177 1.15659 1.00426 1.19742 0.91538 1.24972 0.95819 0.96198 0.97194 1.69931 1.32400 1.08193 1.42268 0.86401 0.81064 0.77827 0.81576 1.20499 1.21006 1.19665 1.20996 0.93118 0.96954 0.92306 1.21415 0.95591 0.97105 0.99378 1.22879 1.01228 0.98785 0.83628 1.22994 0.81157 1.00381 0.98349 1.87975 1.20868 1.77423 1.43266 0.91393 0.90614 0.91279 0.90237 0.87930 0.84522 0.83500 0.75325 0.96001 0.94232 0.92421 0.83055 0.84407 0.87369 0.89713 0.92442 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.57 37.16 0.36 -0.45 16 2 C 0.07 0.56 3.41 -26.36 -0.09 0.47 16 3 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 4 C 0.08 0.73 5.94 -3.32 -0.02 0.71 16 5 N -0.61 -6.26 3.01 -173.14 -0.52 -6.78 16 6 C 0.56 7.40 7.27 -12.33 -0.09 7.31 16 7 O -0.52 -8.51 16.51 5.31 0.09 -8.42 16 8 C -0.08 -1.08 5.06 -104.97 -0.53 -1.61 16 9 C -0.09 -1.22 9.72 -39.18 -0.38 -1.60 16 10 C -0.02 -0.28 9.50 -39.64 -0.38 -0.66 16 11 C -0.65 -9.85 5.95 -39.49 -0.24 -10.09 16 12 S 2.69 46.47 5.73 -107.50 -0.62 45.85 16 13 O -0.96 -19.03 16.74 -57.17 -0.96 -19.99 16 14 O -0.98 -17.58 17.27 -57.17 -0.99 -18.57 16 15 N -1.10 -21.10 5.99 -11.65 -0.07 -21.17 16 16 C 0.24 5.80 5.98 -5.19 -0.03 5.77 16 17 C -0.53 -13.85 9.27 -34.44 -0.32 -14.17 16 18 H 0.07 1.66 7.65 -52.49 -0.40 1.26 16 19 C 0.06 1.65 5.46 -17.81 -0.10 1.55 16 20 N -0.89 -24.86 13.29 55.43 0.74 -24.12 16 21 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 C -0.01 -0.21 9.50 -39.64 -0.38 -0.59 16 26 C -0.12 -1.44 7.38 -39.18 -0.29 -1.73 16 27 C 0.06 0.45 5.42 -3.54 -0.02 0.44 16 28 C 0.05 0.35 6.99 37.31 0.26 0.61 16 29 O -0.38 -3.27 10.38 -35.23 -0.37 -3.63 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.97 7.11 -51.93 -0.37 0.60 16 35 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.15 1.74 7.60 -52.49 -0.40 1.34 16 37 H 0.41 7.21 8.54 -34.47 -0.29 6.91 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.04 1.00 7.75 -51.93 -0.40 0.60 16 40 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.15 2.10 7.60 -52.48 -0.40 1.70 16 42 H 0.14 1.37 6.91 -52.49 -0.36 1.01 16 43 H 0.11 0.84 4.69 -51.93 -0.24 0.60 16 44 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 393.70 15.07 5.93 5.93 Total: -1.00 -34.37 393.70 -10.26 -44.63 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.23 Total: 4.79 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -2.24 Total: -14.02 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.14 Total: -52.07 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -2.22 Total: -50.62 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 46.47 SS G_CDS: -0.62 Total: 45.85 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.37 -10.26 -44.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024840650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.037 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds