Wall clock time and date at job start Tue Mar 31 2020 07:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35949 * 116.99512 * 2 1 4 4 C 1.38182 * 120.01059 * 359.72808 * 3 2 1 5 5 C 1.39774 * 119.85451 * 179.79552 * 4 3 2 6 6 C 1.47339 * 120.06435 * 180.22666 * 5 4 3 7 7 N 1.29884 * 119.99719 * 199.83901 * 6 5 4 8 8 N 1.40098 * 120.00214 * 18.14143 * 7 6 5 9 9 C 1.37982 * 120.00350 * 188.14736 * 8 7 6 10 10 N 1.28952 * 124.82014 * 359.69389 * 9 8 7 11 11 C 1.34726 * 117.89015 * 179.83960 * 10 9 8 12 12 C 1.41133 * 128.73605 * 180.16177 * 11 10 9 13 13 C 1.37184 * 120.43255 * 180.31218 * 12 11 10 14 14 C 1.38731 * 120.60225 * 359.97438 * 13 12 11 15 15 C 1.37710 * 119.98949 * 0.02562 * 14 13 12 16 16 C 1.39272 * 120.20207 * 0.02562 * 15 14 13 17 17 S 1.75803 * 124.82475 * 179.97438 * 9 8 7 18 18 C 1.39839 * 119.86648 * 0.50089 * 5 4 3 19 19 C 1.37764 * 120.01112 * 359.72609 * 18 5 4 20 20 C 1.38958 * 120.14888 * 0.02562 * 19 18 5 21 21 O 1.35704 * 119.93256 * 179.97438 * 20 19 18 22 22 C 1.34794 * 117.00365 * 5.69992 * 21 20 19 23 23 H 1.08005 * 119.99324 * 4.44755 * 22 21 20 24 24 C 1.38593 * 120.00079 * 184.45070 * 22 21 20 25 25 N 1.31594 * 120.00162 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99694 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46933 * 90.00047 * 26 24 22 28 28 H 1.48502 * 109.46676 * 209.99574 * 26 24 22 29 29 H 1.48490 * 109.47181 * 329.99997 * 26 24 22 30 30 H 1.09007 * 109.46859 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47557 * 59.99833 * 1 2 3 32 32 H 1.08998 * 109.47319 * 299.99433 * 1 2 3 33 33 H 1.07997 * 120.07211 * 359.97438 * 4 3 2 34 34 H 1.07995 * 119.99884 * 19.84232 * 6 5 4 35 35 H 0.97012 * 119.99817 * 8.14616 * 8 7 6 36 36 H 1.08007 * 119.78790 * 0.28873 * 12 11 10 37 37 H 1.07999 * 119.69815 * 180.02562 * 13 12 11 38 38 H 1.07996 * 120.00136 * 180.02562 * 14 13 12 39 39 H 1.07998 * 119.89757 * 180.02562 * 15 14 13 40 40 H 1.08001 * 119.99477 * 179.75071 * 18 5 4 41 41 H 1.08004 * 119.92284 * 180.02562 * 19 18 5 42 42 H 0.96998 * 120.00108 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2937 2.3703 -0.0057 5 6 1.9315 3.6140 -0.0013 6 6 1.1336 4.8527 -0.0023 7 7 1.6730 5.9722 -0.3803 8 7 2.8546 5.9616 -1.1328 9 6 3.5187 7.1432 -1.3913 10 7 3.1331 8.3071 -0.9918 11 6 3.8921 9.3701 -1.3221 12 6 3.6906 10.7310 -1.0073 13 6 4.5777 11.6833 -1.4410 14 6 5.6861 11.3250 -2.1946 15 6 5.9032 10.0032 -2.5139 16 6 5.0126 9.0229 -2.0831 17 16 5.0067 7.2766 -2.3178 18 6 3.3283 3.6803 -0.0019 19 6 4.0731 2.5214 -0.0010 20 6 3.4396 1.2846 0.0000 21 8 4.1776 0.1458 0.0003 22 6 5.5133 0.2821 0.1191 23 1 5.9441 1.2593 0.2804 24 6 6.3339 -0.8316 0.0341 25 7 5.8089 -2.0222 -0.1621 26 14 8.1850 -0.6426 0.1993 27 1 8.5705 -0.7755 1.6273 28 1 8.8631 -1.6970 -0.5967 29 1 8.5926 0.6947 -0.3011 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 0.5137 0.8900 33 1 0.2151 2.3153 -0.0105 34 1 0.1005 4.8298 0.3113 35 1 3.2061 5.1235 -1.4722 36 1 2.8322 11.0249 -0.4214 37 1 4.4122 12.7213 -1.1929 38 1 6.3785 12.0826 -2.5306 39 1 6.7667 9.7258 -3.1003 40 1 3.8233 4.6402 -0.0026 41 1 5.1518 2.5742 -0.0009 42 1 6.3831 -2.8017 -0.2212 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034889174.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:02 Heat of formation + Delta-G solvation = 89.936864 kcal Electronic energy + Delta-G solvation = -28714.559635 eV Core-core repulsion = 24561.558689 eV Total energy + Delta-G solvation = -4153.000945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 369.093 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.23652 -39.93503 -38.31360 -37.78730 -36.77703 -35.27203 -32.73512 -32.29196 -31.13303 -29.92423 -29.23875 -28.68003 -26.80280 -25.66783 -24.50497 -23.20025 -22.67048 -21.88127 -21.44785 -20.12379 -18.87205 -18.31118 -17.98150 -17.37868 -16.70844 -16.26124 -15.64297 -15.47357 -15.33891 -15.25102 -15.09720 -14.72590 -14.57811 -14.12224 -14.02088 -13.86597 -13.69583 -13.48755 -13.05070 -12.69589 -12.59165 -12.16791 -12.04133 -11.91940 -11.81947 -11.49059 -11.41629 -11.10201 -11.06021 -10.97642 -10.68797 -10.60114 -10.20264 -10.18385 -9.75455 -9.58213 -9.36015 -9.01286 -8.25935 -8.21298 -7.77759 -7.05034 -6.69730 -4.22513 0.45038 0.75691 1.02670 1.28255 1.54475 1.88108 2.34063 2.64403 2.91237 3.01160 3.04215 3.06665 3.66051 3.76509 3.80892 4.09176 4.25344 4.57641 4.79412 4.80859 4.86273 4.92567 5.04654 5.18405 5.23190 5.29817 5.36579 5.39008 5.43578 5.57149 5.70610 5.76495 5.81632 6.01995 6.06185 6.08813 6.19291 6.26200 6.28750 6.56254 6.61179 6.66220 6.82282 6.93739 7.01353 7.29297 7.65338 7.69682 7.93657 8.22835 8.73248 9.39085 10.45730 Molecular weight = 369.09amu Principal moments of inertia in cm(-1) A = 0.009692 B = 0.002417 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.369842 B =11580.679283 C =14174.819028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.302 6.302 3 C 0.060 3.940 4 C -0.133 4.133 5 C -0.191 4.191 6 C 0.145 3.855 7 N -0.253 5.253 8 N -0.535 5.535 9 C 0.398 3.602 10 N -0.521 5.521 11 C 0.133 3.867 12 C -0.087 4.087 13 C -0.099 4.099 14 C -0.128 4.128 15 C -0.058 4.058 16 C -0.195 4.195 17 S 0.045 5.955 18 C -0.095 4.095 19 C -0.215 4.215 20 C 0.147 3.853 21 O -0.145 6.145 22 C -0.391 4.391 23 H 0.097 0.903 24 C 0.043 3.957 25 N -0.843 5.843 26 Si 0.944 3.056 27 H -0.270 1.270 28 H -0.275 1.275 29 H -0.264 1.264 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.128 0.872 34 H 0.179 0.821 35 H 0.413 0.587 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.117 0.883 41 H 0.139 0.861 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.246 17.846 -3.259 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.216 6.216 3 C 0.015 3.985 4 C -0.154 4.154 5 C -0.196 4.196 6 C -0.064 4.064 7 N -0.058 5.058 8 N -0.267 5.267 9 C 0.021 3.979 10 N -0.245 5.245 11 C 0.012 3.988 12 C -0.108 4.108 13 C -0.120 4.120 14 C -0.150 4.150 15 C -0.081 4.081 16 C -0.315 4.315 17 S 0.293 5.707 18 C -0.116 4.116 19 C -0.235 4.235 20 C 0.089 3.911 21 O -0.045 6.045 22 C -0.467 4.467 23 H 0.114 0.886 24 C -0.165 4.165 25 N -0.475 5.475 26 Si 0.768 3.232 27 H -0.195 1.195 28 H -0.199 1.199 29 H -0.189 1.189 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.146 0.854 34 H 0.195 0.805 35 H 0.262 0.738 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.135 0.865 41 H 0.156 0.844 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.127 17.389 -3.480 18.207 hybrid contribution 0.859 -0.289 0.258 0.942 sum -3.268 17.099 -3.222 17.705 Atomic orbital electron populations 1.22940 0.80000 1.03243 1.00459 1.86253 1.19722 1.26100 1.89484 1.18096 0.89379 0.84700 1.06342 1.20787 0.98715 0.90620 1.05297 1.18682 0.92799 0.92530 1.15547 1.25236 0.98654 0.87738 0.94817 1.75315 0.96744 1.24512 1.09256 1.45451 1.25181 1.04874 1.51220 1.23423 0.91396 0.88892 0.94141 1.66314 1.32207 0.96298 1.29673 1.18960 0.89990 0.93504 0.96353 1.20610 1.00435 0.88772 1.01026 1.20898 0.94222 0.99239 0.97595 1.20970 0.98573 0.95181 1.00272 1.20259 0.97489 0.91425 0.98956 1.23444 1.02914 0.95985 1.09158 1.85137 1.24978 1.01991 1.58599 1.21161 0.92719 0.97899 0.99836 1.20815 1.00757 0.90552 1.11381 1.18842 0.88383 0.87619 0.96273 1.84038 1.19769 1.25567 1.75138 1.21491 0.78326 0.96159 1.50675 0.88561 1.25403 1.00909 0.94186 0.95961 1.70071 1.36648 0.98522 1.42230 0.85652 0.79692 0.78886 0.78961 1.19544 1.19947 1.18861 0.88887 0.93367 0.93299 0.85447 0.80478 0.73847 0.85036 0.85138 0.85157 0.85576 0.86513 0.84360 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.38 16 2 O -0.30 -6.00 10.28 -34.19 -0.35 -6.35 16 3 C 0.06 1.20 6.70 -39.12 -0.26 0.94 16 4 C -0.13 -2.12 8.77 -39.03 -0.34 -2.46 16 5 C -0.19 -3.00 5.59 -105.02 -0.59 -3.59 16 6 C 0.14 1.95 11.20 -14.67 -0.16 1.78 16 7 N -0.25 -3.91 11.31 32.14 0.36 -3.55 16 8 N -0.54 -8.22 4.56 30.47 0.14 -8.08 16 9 C 0.40 6.20 8.42 -88.88 -0.75 5.45 16 10 N -0.52 -8.61 10.40 -11.16 -0.12 -8.72 16 11 C 0.13 1.92 6.94 -84.90 -0.59 1.34 16 12 C -0.09 -1.01 10.10 -38.87 -0.39 -1.40 16 13 C -0.10 -0.88 9.99 -39.78 -0.40 -1.27 16 14 C -0.13 -1.11 10.05 -39.59 -0.40 -1.50 16 15 C -0.06 -0.60 10.06 -39.39 -0.40 -1.00 16 16 C -0.20 -2.57 6.52 -38.60 -0.25 -2.82 16 17 S 0.05 0.60 23.39 -107.50 -2.51 -1.92 16 18 C -0.10 -1.64 7.77 -39.16 -0.30 -1.94 16 19 C -0.21 -4.30 9.11 -39.49 -0.36 -4.66 16 20 C 0.15 3.33 6.67 -38.83 -0.26 3.07 16 21 O -0.15 -3.94 9.53 -14.32 -0.14 -4.07 16 22 C -0.39 -10.25 9.44 30.86 0.29 -9.95 16 23 H 0.10 2.30 5.26 -52.48 -0.28 2.02 16 24 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 25 N -0.84 -23.46 13.67 55.48 0.76 -22.70 16 26 Si 0.94 19.29 29.55 -169.99 -5.02 14.26 16 27 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 28 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 29 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 32 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 33 H 0.13 1.57 6.28 -52.49 -0.33 1.24 16 34 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.41 6.08 5.78 -182.59 -1.06 5.02 16 36 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 1.91 5.64 -52.49 -0.30 1.61 16 41 H 0.14 2.74 5.68 -52.48 -0.30 2.45 16 42 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 377.34 15.07 5.69 5.69 Total: -1.00 -32.34 377.34 -10.18 -42.52 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.72 Total: 8.56 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -4.27 Total: -15.64 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 1.15 Total: -43.05 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.49 Total: -10.42 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.51 Total: -1.92 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.34 -10.18 -42.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034889174.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.461 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds