Wall clock time and date at job start Tue Mar 31 2020 06:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99830 * 2 1 4 4 H 1.48501 * 109.47018 * 239.99869 * 3 2 1 5 5 H 1.48503 * 109.47070 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47096 * 119.99925 * 3 2 1 7 7 C 1.37876 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99792 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99915 * 359.71965 * 7 2 1 10 10 C 1.50695 * 109.47426 * 300.27869 * 9 7 2 11 11 C 1.38246 * 119.97239 * 115.29269 * 10 9 7 12 12 C 1.38205 * 120.02463 * 179.76992 * 11 10 9 13 13 C 1.38461 * 119.97178 * 0.50622 * 12 11 10 14 14 F 1.35103 * 120.02282 * 179.76984 * 13 12 11 15 15 C 1.38461 * 119.94666 * 359.74685 * 13 12 11 16 16 C 1.38194 * 119.97705 * 359.97438 * 15 13 12 17 17 C 1.50706 * 109.46990 * 60.28102 * 9 7 2 18 18 C 1.38249 * 119.97474 * 182.96541 * 17 9 7 19 19 C 1.38188 * 120.02468 * 179.76635 * 18 17 9 20 20 C 1.38459 * 119.97525 * 0.51111 * 19 18 17 21 21 F 1.35105 * 120.03051 * 179.76882 * 20 19 18 22 22 C 1.38461 * 119.94880 * 359.74354 * 20 19 18 23 23 C 1.38195 * 119.97351 * 0.02562 * 22 20 19 24 24 C 1.50701 * 109.47135 * 180.27659 * 9 7 2 25 25 C 1.38247 * 119.97461 * 127.58144 * 24 9 7 26 26 C 1.38193 * 120.02680 * 179.76797 * 25 24 9 27 27 C 1.38459 * 119.97487 * 0.51446 * 26 25 24 28 28 F 1.35101 * 120.02676 * 179.76602 * 27 26 25 29 29 C 1.38462 * 119.94591 * 359.73716 * 27 26 25 30 30 C 1.38194 * 119.97440 * 0.02562 * 29 27 26 31 31 H 0.96995 * 120.00071 * 0.02562 * 1 2 3 32 32 H 1.08000 * 119.98995 * 0.02562 * 11 10 9 33 33 H 1.07997 * 120.01291 * 180.25559 * 12 11 10 34 34 H 1.08001 * 120.00671 * 179.97438 * 15 13 12 35 35 H 1.08003 * 119.98767 * 180.02562 * 16 15 13 36 36 H 1.08001 * 119.98727 * 0.02562 * 18 17 9 37 37 H 1.08003 * 120.01754 * 180.25758 * 19 18 17 38 38 H 1.08007 * 120.01365 * 179.97438 * 22 20 19 39 39 H 1.08000 * 119.99055 * 180.02562 * 23 22 20 40 40 H 1.08005 * 119.98563 * 0.02708 * 25 24 9 41 41 H 1.08004 * 120.01662 * 180.25584 * 26 25 24 42 42 H 1.08001 * 120.00937 * 179.97438 * 29 27 26 43 43 H 1.08005 * 119.98640 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 0.0053 10 6 0.3847 -2.5736 1.2360 11 6 -0.9917 -2.6023 1.1110 12 6 -1.7872 -2.6754 2.2388 13 6 -1.2053 -2.7093 3.4947 14 9 -1.9820 -2.7760 4.5981 15 6 0.1734 -2.6751 3.6188 16 6 0.9669 -2.6079 2.4894 17 6 0.3847 -2.5844 -1.2249 18 6 -0.4500 -3.6712 -1.4078 19 6 -1.2485 -3.7481 -2.5331 20 6 -1.2045 -2.7414 -3.4827 21 9 -1.9812 -2.8178 -4.5855 22 6 -0.3642 -1.6560 -3.3010 23 6 0.4299 -1.5789 -2.1726 24 6 2.2304 -3.6445 0.0103 25 6 2.1242 -4.6399 0.9637 26 6 3.0187 -5.6933 0.9664 27 6 4.0282 -5.7460 0.0202 28 9 4.9062 -6.7728 0.0247 29 6 4.1368 -4.7457 -0.9311 30 6 3.2381 -3.6959 -0.9348 31 1 -0.4850 0.8400 -0.0004 32 1 -1.4456 -2.5718 0.1314 33 1 -2.8624 -2.7020 2.1407 34 1 0.6283 -2.7011 4.5980 35 1 2.0423 -2.5816 2.5860 36 1 -0.4812 -4.4583 -0.6690 37 1 -1.9036 -4.5951 -2.6738 38 1 -0.3288 -0.8703 -4.0412 39 1 1.0851 -0.7322 -2.0303 40 1 1.3392 -4.5965 1.7043 41 1 2.9331 -6.4730 1.7088 42 1 4.9240 -4.7856 -1.6694 43 1 3.3223 -2.9158 -1.6769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035049787.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:31 Heat of formation + Delta-G solvation = -48.639059 kcal Electronic energy + Delta-G solvation = -33549.225212 eV Core-core repulsion = 28881.880726 eV Total energy + Delta-G solvation = -4667.344486 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.108 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.55486 -48.30643 -48.28857 -40.20684 -37.97329 -37.61850 -34.48734 -32.14670 -30.92767 -30.59747 -30.04907 -29.04741 -28.81867 -26.55219 -24.02210 -22.78019 -22.28236 -21.92034 -21.44166 -21.28623 -19.55882 -17.32821 -17.17280 -17.00032 -16.79557 -15.94213 -15.74622 -15.44833 -15.24990 -15.14394 -14.99555 -14.98158 -14.83866 -14.64112 -13.98092 -13.69031 -13.46850 -13.31645 -13.07608 -12.84098 -12.78152 -12.70792 -12.52233 -12.43800 -12.17478 -11.93290 -11.39154 -11.35678 -11.17617 -11.05992 -10.86061 -10.73858 -10.45160 -10.30384 -10.20241 -9.94617 -9.60802 -8.79829 -8.66840 -8.31582 -8.23979 -8.04264 -7.66724 -7.55720 -6.33116 -4.50209 1.61258 1.67151 1.91416 1.99863 2.05357 2.10517 3.10842 3.18883 3.21338 4.03363 4.16386 4.38835 4.47878 4.65252 4.88165 4.95032 4.96559 5.16238 5.22699 5.43154 5.44844 5.48597 5.51438 5.54183 5.76719 5.80497 5.91316 6.01040 6.05009 6.15630 6.23104 6.25536 6.34965 6.50485 6.55241 6.61147 6.66891 6.75861 6.79234 6.81603 6.87279 6.91419 7.04410 7.15410 7.25263 7.32880 7.40887 7.52632 7.57800 7.72631 7.74685 7.94998 8.52734 9.15386 10.64094 Molecular weight = 368.11amu Principal moments of inertia in cm(-1) A = 0.005758 B = 0.005443 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4861.984514 B = 5142.936266 C = 6379.915244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.073 3.927 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.071 0.929 9 C 0.173 3.827 10 C -0.012 4.012 11 C -0.063 4.063 12 C -0.162 4.162 13 C 0.064 3.936 14 F -0.158 7.158 15 C -0.167 4.167 16 C -0.085 4.085 17 C -0.030 4.030 18 C -0.105 4.105 19 C -0.173 4.173 20 C 0.072 3.928 21 F -0.157 7.157 22 C -0.175 4.175 23 C -0.021 4.021 24 C -0.040 4.040 25 C -0.104 4.104 26 C -0.156 4.156 27 C 0.071 3.929 28 F -0.152 7.152 29 C -0.158 4.158 30 C -0.074 4.074 31 H 0.269 0.731 32 H 0.134 0.866 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.149 0.851 40 H 0.135 0.865 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.427 -5.964 -0.527 6.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.089 0.911 9 C 0.173 3.827 10 C -0.012 4.012 11 C -0.081 4.081 12 C -0.181 4.181 13 C 0.045 3.955 14 F -0.137 7.137 15 C -0.186 4.186 16 C -0.103 4.103 17 C -0.031 4.031 18 C -0.123 4.123 19 C -0.192 4.192 20 C 0.053 3.947 21 F -0.136 7.136 22 C -0.194 4.194 23 C -0.039 4.039 24 C -0.041 4.041 25 C -0.122 4.122 26 C -0.175 4.175 27 C 0.052 3.948 28 F -0.131 7.131 29 C -0.176 4.176 30 C -0.092 4.092 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.166 0.834 40 H 0.152 0.848 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.217 -5.864 -0.520 6.012 hybrid contribution 0.066 0.992 0.203 1.015 sum 1.283 -4.872 -0.317 5.048 Atomic orbital electron populations 1.69993 1.05544 1.27587 1.45837 1.24938 0.94956 0.99129 0.94299 0.86676 0.79812 0.82832 0.79129 1.19838 1.21087 1.19940 1.20859 0.93053 0.87842 1.53942 0.91073 1.15259 0.88524 0.91993 0.86935 1.19931 0.93390 0.93128 0.94801 1.21131 0.93354 0.95702 0.97914 1.20999 1.00059 1.05648 0.91439 1.17618 0.88709 1.06800 0.82357 1.91402 1.75250 1.94456 1.52550 1.20889 0.91692 1.06496 0.99558 1.20760 0.99694 0.98660 0.91189 1.19996 0.95273 0.92184 0.95636 1.20913 0.96357 0.98599 0.96420 1.20800 1.03479 0.99248 0.95711 1.17684 0.94544 0.97618 0.84820 1.91405 1.73687 1.96639 1.51894 1.21148 0.99741 0.97812 1.00685 1.21313 0.95447 0.97824 0.89308 1.20142 0.95584 0.94857 0.93470 1.21299 0.98895 0.92910 0.99075 1.21027 0.96218 1.00594 0.99643 1.17681 0.90980 0.87085 0.99007 1.91435 1.67769 1.57541 1.96360 1.21083 1.01841 0.95127 0.99595 1.20940 0.92985 0.96609 0.98650 0.92098 0.84882 0.86438 0.86292 0.85750 0.86420 0.86354 0.86411 0.83386 0.84755 0.85694 0.85616 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -19.22 9.69 55.43 0.54 -18.68 16 2 C 0.07 1.58 3.40 -17.82 -0.06 1.52 16 3 Si 0.89 17.92 29.54 -169.99 -5.02 12.90 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.29 -5.96 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.52 -10.77 6.25 -34.44 -0.22 -10.99 16 8 H 0.07 1.49 7.36 -52.48 -0.39 1.11 16 9 C 0.17 3.24 0.29 -159.12 -0.05 3.19 16 10 C -0.01 -0.22 2.70 -104.62 -0.28 -0.50 16 11 C -0.06 -1.19 7.40 -39.59 -0.29 -1.48 16 12 C -0.16 -2.92 10.03 -39.51 -0.40 -3.31 16 13 C 0.06 1.15 7.30 -39.42 -0.29 0.86 16 14 F -0.16 -2.79 17.27 2.25 0.04 -2.75 16 15 C -0.17 -2.88 10.03 -39.52 -0.40 -3.27 16 16 C -0.08 -1.52 6.81 -39.60 -0.27 -1.79 16 17 C -0.03 -0.56 3.10 -104.61 -0.32 -0.89 16 18 C -0.10 -1.80 6.71 -39.60 -0.27 -2.06 16 19 C -0.17 -2.89 10.03 -39.52 -0.40 -3.29 16 20 C 0.07 1.28 7.30 -39.42 -0.29 0.99 16 21 F -0.16 -2.74 17.27 2.25 0.04 -2.71 16 22 C -0.17 -3.14 10.03 -39.51 -0.40 -3.53 16 23 C -0.02 -0.40 7.59 -39.59 -0.30 -0.70 16 24 C -0.04 -0.69 4.24 -104.62 -0.44 -1.13 16 25 C -0.10 -1.63 8.22 -39.59 -0.33 -1.96 16 26 C -0.16 -2.28 10.03 -39.52 -0.40 -2.68 16 27 C 0.07 1.08 7.30 -39.42 -0.29 0.80 16 28 F -0.15 -2.30 17.27 2.25 0.04 -2.26 16 29 C -0.16 -2.34 10.03 -39.51 -0.40 -2.73 16 30 C -0.07 -1.19 8.74 -39.60 -0.35 -1.54 16 31 H 0.27 6.11 8.31 -40.82 -0.34 5.77 16 32 H 0.13 2.60 5.16 -52.49 -0.27 2.33 16 33 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 34 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 35 H 0.12 2.18 7.59 -52.48 -0.40 1.78 16 36 H 0.12 1.90 7.62 -52.49 -0.40 1.50 16 37 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.12 1.92 8.06 -52.48 -0.42 1.49 16 39 H 0.15 3.01 5.19 -52.49 -0.27 2.74 16 40 H 0.13 2.07 5.30 -52.48 -0.28 1.80 16 41 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 42 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.14 2.16 7.83 -52.48 -0.41 1.74 16 LS Contribution 362.57 15.07 5.46 5.46 Total: -1.00 -22.32 362.57 -9.41 -31.73 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -4.09 Total: 10.82 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: -6.41 Total: -34.51 kcal Atomic # 7 Polarization: -19.22 SS G_CDS: 0.54 Total: -18.68 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 0.12 Total: -7.72 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.02 Total: 12.90 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -22.32 -9.41 -31.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035049787.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.909 kcal (2) G-P(sol) polarization free energy of solvation -22.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds