Wall clock time and date at job start Tue Mar 31 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99830 * 2 1 4 4 H 1.48501 * 109.47018 * 239.99869 * 3 2 1 5 5 H 1.48503 * 109.47070 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47096 * 119.99925 * 3 2 1 7 7 C 1.37876 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99792 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99915 * 359.71965 * 7 2 1 10 10 C 1.50695 * 109.47426 * 300.27869 * 9 7 2 11 11 C 1.38246 * 119.97239 * 115.29269 * 10 9 7 12 12 C 1.38205 * 120.02463 * 179.76992 * 11 10 9 13 13 C 1.38461 * 119.97178 * 0.50622 * 12 11 10 14 14 F 1.35103 * 120.02282 * 179.76984 * 13 12 11 15 15 C 1.38461 * 119.94666 * 359.74685 * 13 12 11 16 16 C 1.38194 * 119.97705 * 359.97438 * 15 13 12 17 17 C 1.50706 * 109.46990 * 60.28102 * 9 7 2 18 18 C 1.38249 * 119.97474 * 182.96541 * 17 9 7 19 19 C 1.38188 * 120.02468 * 179.76635 * 18 17 9 20 20 C 1.38459 * 119.97525 * 0.51111 * 19 18 17 21 21 F 1.35105 * 120.03051 * 179.76882 * 20 19 18 22 22 C 1.38461 * 119.94880 * 359.74354 * 20 19 18 23 23 C 1.38195 * 119.97351 * 0.02562 * 22 20 19 24 24 C 1.50701 * 109.47135 * 180.27659 * 9 7 2 25 25 C 1.38247 * 119.97461 * 127.58144 * 24 9 7 26 26 C 1.38193 * 120.02680 * 179.76797 * 25 24 9 27 27 C 1.38459 * 119.97487 * 0.51446 * 26 25 24 28 28 F 1.35101 * 120.02676 * 179.76602 * 27 26 25 29 29 C 1.38462 * 119.94591 * 359.73716 * 27 26 25 30 30 C 1.38194 * 119.97440 * 0.02562 * 29 27 26 31 31 H 0.96995 * 120.00071 * 0.02562 * 1 2 3 32 32 H 1.08000 * 119.98995 * 0.02562 * 11 10 9 33 33 H 1.07997 * 120.01291 * 180.25559 * 12 11 10 34 34 H 1.08001 * 120.00671 * 179.97438 * 15 13 12 35 35 H 1.08003 * 119.98767 * 180.02562 * 16 15 13 36 36 H 1.08001 * 119.98727 * 0.02562 * 18 17 9 37 37 H 1.08003 * 120.01754 * 180.25758 * 19 18 17 38 38 H 1.08007 * 120.01365 * 179.97438 * 22 20 19 39 39 H 1.08000 * 119.99055 * 180.02562 * 23 22 20 40 40 H 1.08005 * 119.98563 * 0.02708 * 25 24 9 41 41 H 1.08004 * 120.01662 * 180.25584 * 26 25 24 42 42 H 1.08001 * 120.00937 * 179.97438 * 29 27 26 43 43 H 1.08005 * 119.98640 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 0.0053 10 6 0.3847 -2.5736 1.2360 11 6 -0.9917 -2.6023 1.1110 12 6 -1.7872 -2.6754 2.2388 13 6 -1.2053 -2.7093 3.4947 14 9 -1.9820 -2.7760 4.5981 15 6 0.1734 -2.6751 3.6188 16 6 0.9669 -2.6079 2.4894 17 6 0.3847 -2.5844 -1.2249 18 6 -0.4500 -3.6712 -1.4078 19 6 -1.2485 -3.7481 -2.5331 20 6 -1.2045 -2.7414 -3.4827 21 9 -1.9812 -2.8178 -4.5855 22 6 -0.3642 -1.6560 -3.3010 23 6 0.4299 -1.5789 -2.1726 24 6 2.2304 -3.6445 0.0103 25 6 2.1242 -4.6399 0.9637 26 6 3.0187 -5.6933 0.9664 27 6 4.0282 -5.7460 0.0202 28 9 4.9062 -6.7728 0.0247 29 6 4.1368 -4.7457 -0.9311 30 6 3.2381 -3.6959 -0.9348 31 1 -0.4850 0.8400 -0.0004 32 1 -1.4456 -2.5718 0.1314 33 1 -2.8624 -2.7020 2.1407 34 1 0.6283 -2.7011 4.5980 35 1 2.0423 -2.5816 2.5860 36 1 -0.4812 -4.4583 -0.6690 37 1 -1.9036 -4.5951 -2.6738 38 1 -0.3288 -0.8703 -4.0412 39 1 1.0851 -0.7322 -2.0303 40 1 1.3392 -4.5965 1.7043 41 1 2.9331 -6.4730 1.7088 42 1 4.9240 -4.7856 -1.6694 43 1 3.3223 -2.9158 -1.6769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035049787.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:30 Heat of formation + Delta-G solvation = -51.663593 kcal Electronic energy + Delta-G solvation = -33549.356365 eV Core-core repulsion = 28881.880726 eV Total energy + Delta-G solvation = -4667.475639 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.108 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.73855 -49.68716 -49.67880 -41.57339 -39.25263 -38.99493 -35.94163 -33.66237 -32.22531 -31.92344 -31.42835 -30.34926 -30.20262 -28.05300 -25.49014 -24.06642 -23.65600 -23.25615 -22.75082 -22.66752 -20.94554 -18.62677 -18.54039 -18.39312 -18.26357 -17.27463 -17.09855 -16.86797 -16.50054 -16.43231 -16.37746 -16.36348 -16.19776 -16.12786 -15.29326 -15.07808 -14.84096 -14.72349 -14.30003 -14.21349 -14.14890 -13.97307 -13.87609 -13.82216 -13.65826 -13.26637 -12.80841 -12.75352 -12.69034 -12.60273 -12.38493 -12.06955 -11.84827 -11.73701 -11.56864 -11.37796 -11.11462 -10.42647 -9.86547 -9.70579 -9.62034 -9.33772 -9.08741 -8.96026 -7.98075 -6.16345 0.37724 0.46714 0.52063 0.59389 0.66560 0.71564 1.46647 1.53961 1.54750 2.45709 2.85831 2.97541 3.06550 3.25121 3.46412 3.56000 3.57082 3.97907 4.07118 4.09700 4.12816 4.16988 4.19405 4.20322 4.50858 4.51315 4.60634 4.67929 4.71946 4.78764 4.84613 4.87563 5.15123 5.22630 5.25314 5.30959 5.34363 5.38631 5.43290 5.46862 5.51229 5.53236 5.66947 5.71388 5.81798 5.92599 5.96410 6.10762 6.18622 6.30877 6.33513 6.44685 6.88407 7.49241 8.95335 Molecular weight = 368.11amu Principal moments of inertia in cm(-1) A = 0.005758 B = 0.005443 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4861.984514 B = 5142.936266 C = 6379.915244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.050 3.950 3 Si 0.922 3.078 4 H -0.270 1.270 5 H -0.296 1.296 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.064 0.936 9 C 0.173 3.827 10 C -0.017 4.017 11 C -0.072 4.072 12 C -0.165 4.165 13 C 0.056 3.944 14 F -0.156 7.156 15 C -0.162 4.162 16 C -0.091 4.091 17 C -0.035 4.035 18 C -0.104 4.104 19 C -0.167 4.167 20 C 0.063 3.937 21 F -0.156 7.156 22 C -0.179 4.179 23 C -0.037 4.037 24 C -0.054 4.054 25 C -0.104 4.104 26 C -0.150 4.150 27 C 0.066 3.934 28 F -0.151 7.151 29 C -0.154 4.154 30 C -0.084 4.084 31 H 0.260 0.740 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.142 0.858 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.143 0.857 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.631 -7.441 -0.069 7.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.154 4.154 3 Si 0.750 3.250 4 H -0.195 1.195 5 H -0.223 1.223 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.173 3.827 10 C -0.018 4.018 11 C -0.090 4.090 12 C -0.184 4.184 13 C 0.037 3.963 14 F -0.135 7.135 15 C -0.181 4.181 16 C -0.109 4.109 17 C -0.035 4.035 18 C -0.122 4.122 19 C -0.186 4.186 20 C 0.044 3.956 21 F -0.135 7.135 22 C -0.198 4.198 23 C -0.055 4.055 24 C -0.054 4.054 25 C -0.122 4.122 26 C -0.169 4.169 27 C 0.047 3.953 28 F -0.130 7.130 29 C -0.172 4.172 30 C -0.102 4.102 31 H 0.069 0.931 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.159 0.841 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.161 0.839 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.166 0.834 42 H 0.163 0.837 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.435 -7.347 -0.068 7.486 hybrid contribution 0.041 1.410 0.059 1.412 sum 1.477 -5.936 -0.008 6.117 Atomic orbital electron populations 1.70076 1.05975 1.26942 1.47448 1.25214 0.95180 1.00277 0.94687 0.86166 0.78810 0.81342 0.78658 1.19543 1.22255 1.20772 1.20996 0.92823 0.88885 1.52534 0.91808 1.15199 0.88785 0.91668 0.87079 1.19969 0.93444 0.93267 0.95079 1.21068 0.93508 0.96627 0.97807 1.21160 1.00836 1.05118 0.91303 1.17720 0.89092 1.07139 0.82384 1.91404 1.75249 1.94480 1.52399 1.21109 0.91429 1.05196 1.00375 1.20827 0.99940 0.98962 0.91193 1.20017 0.95590 0.92502 0.95423 1.20999 0.95998 0.98400 0.96819 1.21056 1.03106 0.99528 0.94876 1.17772 0.94727 0.97887 0.85209 1.91406 1.73612 1.96642 1.51845 1.21256 0.99551 0.98372 1.00604 1.21197 0.96183 0.97827 0.90332 1.20082 0.95772 0.94997 0.94532 1.21286 0.99262 0.92909 0.98763 1.21233 0.95329 1.00578 0.99712 1.17797 0.91141 0.87138 0.99193 1.91441 1.67735 1.57449 1.96359 1.21245 1.01767 0.94386 0.99815 1.20939 0.93432 0.97146 0.98684 0.93061 0.85782 0.85087 0.84052 0.85483 0.85302 0.83887 0.85404 0.85076 0.84541 0.83411 0.83657 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -39.51 9.69 21.45 0.21 -39.30 16 2 C 0.05 2.19 3.40 84.65 0.29 2.48 16 3 Si 0.92 37.14 29.54 68.60 2.03 39.16 16 4 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 5 H -0.30 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.51 -21.43 6.25 25.60 0.16 -21.27 16 8 H 0.06 2.70 7.36 -2.91 -0.02 2.68 16 9 C 0.17 6.41 0.29 -55.17 -0.02 6.39 16 10 C -0.02 -0.62 2.70 -19.86 -0.05 -0.68 16 11 C -0.07 -2.66 7.40 22.26 0.16 -2.50 16 12 C -0.17 -5.74 10.03 22.32 0.22 -5.52 16 13 C 0.06 1.90 7.30 22.38 0.16 2.07 16 14 F -0.16 -5.25 17.27 44.97 0.78 -4.47 16 15 C -0.16 -5.29 10.03 22.31 0.22 -5.06 16 16 C -0.09 -3.16 6.81 22.26 0.15 -3.01 16 17 C -0.03 -1.28 3.10 -19.86 -0.06 -1.34 16 18 C -0.10 -3.46 6.71 22.26 0.15 -3.31 16 19 C -0.17 -5.31 10.03 22.31 0.22 -5.08 16 20 C 0.06 2.16 7.30 22.38 0.16 2.32 16 21 F -0.16 -5.25 17.27 44.97 0.78 -4.47 16 22 C -0.18 -6.39 10.03 22.31 0.22 -6.17 16 23 C -0.04 -1.44 7.59 22.26 0.17 -1.27 16 24 C -0.05 -1.78 4.24 -19.86 -0.08 -1.86 16 25 C -0.10 -3.10 8.22 22.26 0.18 -2.91 16 26 C -0.15 -4.02 10.03 22.31 0.22 -3.80 16 27 C 0.07 1.86 7.30 22.38 0.16 2.02 16 28 F -0.15 -4.20 17.27 44.97 0.78 -3.42 16 29 C -0.15 -4.28 10.03 22.31 0.22 -4.06 16 30 C -0.08 -2.64 8.74 22.26 0.19 -2.44 16 31 H 0.26 12.03 8.31 -92.71 -0.77 11.26 16 32 H 0.12 4.79 5.16 -2.91 -0.02 4.78 16 33 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 34 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 35 H 0.13 4.30 7.59 -2.91 -0.02 4.28 16 36 H 0.13 3.96 7.62 -2.91 -0.02 3.94 16 37 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 38 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 39 H 0.13 5.48 5.19 -2.91 -0.02 5.46 16 40 H 0.14 3.98 5.30 -2.91 -0.02 3.96 16 41 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 42 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 43 H 0.13 4.15 7.83 -2.91 -0.02 4.13 16 Total: -1.00 -45.85 362.57 8.72 -37.14 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 1.08 Total: 30.37 kcal Atomic # 6 Polarization: -58.07 SS G_CDS: 3.08 Total: -55.00 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.21 Total: -39.30 kcal Atomic # 9 Polarization: -14.70 SS G_CDS: 2.33 Total: -12.37 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.16 kcal Total: -45.85 8.72 -37.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035049787.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.526 kcal (2) G-P(sol) polarization free energy of solvation -45.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds