Wall clock time and date at job start Tue Mar 31 2020 05:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34889 * 125.64669 * 2 1 4 4 C 1.40724 * 107.06090 * 179.75020 * 3 2 1 5 5 C 1.36186 * 106.72577 * 0.36770 * 4 3 2 6 6 C 1.47430 * 125.94916 * 179.88470 * 5 4 3 7 7 C 1.39838 * 119.51905 * 179.71774 * 6 5 4 8 8 C 1.36903 * 119.54173 * 180.02562 * 7 6 5 9 9 C 1.50703 * 120.69005 * 179.97438 * 8 7 6 10 10 F 1.39905 * 109.47157 * 0.02562 * 9 8 7 11 11 F 1.39900 * 109.47159 * 240.00514 * 9 8 7 12 12 F 1.39897 * 109.47274 * 120.00205 * 9 8 7 13 13 C 1.40235 * 118.61646 * 0.25730 * 8 7 6 14 14 C 1.43207 * 120.48067 * 179.72319 * 13 8 7 15 15 N 8.88509 * 147.38734 * 179.73997 * 2 1 3 16 16 C 1.40764 * 119.03107 * 359.52646 * 13 8 7 17 17 S 1.76204 * 119.81889 * 180.24976 * 16 13 8 18 18 C 1.81006 * 99.99601 * 180.22719 * 17 16 13 19 19 C 1.50703 * 109.46655 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00282 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99405 * 179.97438 * 19 18 17 22 22 N 1.31508 * 120.00436 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99813 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47040 * 89.99993 * 23 21 19 25 25 H 1.48501 * 109.47530 * 210.00334 * 23 21 19 26 26 H 1.48506 * 109.47016 * 330.00450 * 23 21 19 27 27 N 1.32284 * 120.35588 * 0.47679 * 16 13 8 28 28 O 1.34180 * 125.64862 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47715 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47267 * 300.00204 * 1 2 3 31 31 H 1.09000 * 109.47168 * 59.99662 * 1 2 3 32 32 H 1.07996 * 126.47071 * 359.97271 * 3 2 1 33 33 H 1.07993 * 126.63630 * 180.26775 * 4 3 2 34 34 H 1.07993 * 120.22850 * 0.03184 * 7 6 5 35 35 H 1.09000 * 109.47564 * 300.00003 * 18 17 16 36 36 H 1.08998 * 109.47137 * 60.00206 * 18 17 16 37 37 H 0.97001 * 120.00513 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2930 1.0961 0.0000 4 6 3.6269 0.6476 0.0059 5 6 3.5827 -0.7135 0.0008 6 6 4.7475 -1.6173 0.0017 7 6 4.5459 -3.0011 0.0020 8 6 5.6272 -3.8407 0.0034 9 6 5.4399 -5.3361 0.0043 10 9 4.0731 -5.6348 0.0029 11 9 6.0353 -5.8800 1.1474 12 9 6.0371 -5.8816 -1.1371 13 6 6.9127 -3.2804 0.0100 14 6 8.0717 -4.1215 0.0176 15 7 8.9911 -4.7886 0.0217 16 6 7.0471 -1.8792 0.0048 17 16 8.6526 -1.1530 0.0063 18 6 8.2042 0.6007 0.0052 19 6 9.4564 1.4392 0.0069 20 1 10.4255 0.9626 0.0080 21 6 9.3646 2.8150 0.0059 22 7 8.1845 3.3954 0.0039 23 14 10.9166 3.8545 0.0073 24 1 11.3298 4.1291 -1.3925 25 1 10.6524 5.1378 0.7062 26 1 12.0018 3.1229 0.7091 27 7 5.9747 -1.1047 0.0033 28 8 2.2890 -1.0904 0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.9614 2.1239 -0.0004 33 1 4.5139 1.2636 0.0115 34 1 3.5442 -3.4045 0.0010 35 1 7.6173 0.8252 -0.8855 36 1 7.6154 0.8257 0.8944 37 1 8.1200 4.3632 0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038142885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:39 Heat of formation + Delta-G solvation = -73.184198 kcal Electronic energy + Delta-G solvation = -29653.337046 eV Core-core repulsion = 24880.998717 eV Total energy + Delta-G solvation = -4772.338329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 368.055 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.44794 -47.96305 -47.88440 -42.70161 -40.42203 -36.66976 -34.02625 -33.33634 -33.29996 -32.90852 -31.15210 -28.80967 -27.57045 -26.70090 -24.59732 -23.22223 -23.05801 -21.58294 -20.58209 -19.72488 -18.85438 -18.76192 -18.70123 -17.03661 -16.81148 -16.51021 -16.42475 -16.01150 -15.03759 -14.90447 -14.82268 -14.57830 -14.53440 -14.30986 -14.27854 -14.03191 -13.99224 -13.42507 -13.41324 -13.40707 -13.12123 -13.02597 -12.91629 -12.83527 -12.60101 -12.48042 -12.41375 -12.38568 -12.01309 -11.02374 -10.95919 -10.66249 -10.62769 -10.31091 -9.87361 -9.80121 -9.75921 -9.43561 -8.73643 -8.19433 -7.22765 -6.32168 -4.39549 -0.11807 0.57715 1.56324 1.72849 2.23644 2.39847 2.45033 2.56715 3.02148 3.18226 3.19170 3.25307 3.27575 3.32818 3.50991 3.61979 3.66132 4.09842 4.18305 4.24567 4.56022 4.66390 4.73512 4.80359 4.97149 5.05583 5.06987 5.18067 5.18158 5.38768 5.44532 5.67220 5.89645 5.98597 6.05229 6.47906 6.92444 6.94316 7.04661 7.33900 7.47458 7.57239 7.80230 8.61053 9.25133 10.78128 Molecular weight = 368.05amu Principal moments of inertia in cm(-1) A = 0.006995 B = 0.003953 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4002.154977 B = 7081.900768 C =10898.944104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.009 3.991 3 C -0.217 4.217 4 C -0.114 4.114 5 C -0.009 4.009 6 C 0.268 3.732 7 C -0.144 4.144 8 C -0.071 4.071 9 C 0.510 3.490 10 F -0.168 7.168 11 F -0.167 7.167 12 F -0.167 7.167 13 C -0.045 4.045 14 C 0.248 3.752 15 N -0.377 5.377 16 C 0.185 3.815 17 S -0.052 6.052 18 C 0.070 3.930 19 C -0.530 4.530 20 H 0.067 0.933 21 C 0.074 3.926 22 N -0.882 5.882 23 Si 0.906 3.094 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.270 1.270 27 N -0.444 5.444 28 O -0.167 6.167 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.155 0.845 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.615 -9.631 -0.014 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.043 4.043 3 C -0.236 4.236 4 C -0.135 4.135 5 C -0.059 4.059 6 C 0.125 3.875 7 C -0.169 4.169 8 C -0.084 4.084 9 C 0.455 3.545 10 F -0.149 7.149 11 F -0.148 7.148 12 F -0.148 7.148 13 C -0.061 4.061 14 C -0.068 4.068 15 N -0.052 5.052 16 C -0.066 4.066 17 S 0.197 5.803 18 C -0.077 4.077 19 C -0.570 4.570 20 H 0.085 0.915 21 C -0.132 4.132 22 N -0.519 5.519 23 Si 0.732 3.268 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.195 1.195 27 N -0.157 5.157 28 O -0.063 6.063 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.173 0.827 33 H 0.187 0.813 34 H 0.178 0.822 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.948 -10.325 -0.001 17.354 hybrid contribution -0.948 0.570 -0.013 1.106 sum -14.896 -9.755 -0.014 17.806 Atomic orbital electron populations 1.20368 0.84665 1.04204 1.03891 1.22668 0.93984 0.83961 1.03669 1.21661 0.92582 0.99824 1.09503 1.22245 0.98985 0.93209 0.99042 1.19328 0.80825 0.92299 1.13420 1.18363 0.88889 0.88366 0.91870 1.21393 0.99654 0.92894 1.02990 1.19827 0.93849 0.91873 1.02802 1.18049 0.74330 0.87547 0.74530 1.93201 1.31260 1.94218 1.96220 1.93266 1.83617 1.87430 1.50498 1.93265 1.83551 1.87367 1.50632 1.16108 0.87362 0.91243 1.11345 1.24879 0.93248 0.93823 0.94896 1.81178 1.08575 1.08120 1.07316 1.23863 0.99878 0.89732 0.93134 1.86193 0.97261 1.12088 1.84720 1.21448 1.00800 0.82679 1.02740 1.20632 0.91336 0.90747 1.54292 0.91500 1.24893 0.96825 0.97292 0.94156 1.69938 1.22986 1.10648 1.48296 0.86367 0.82484 0.79444 0.78494 1.20215 1.20802 1.19502 1.68287 0.96484 1.37103 1.13853 1.83924 1.15438 1.34914 1.72033 0.90425 0.89329 0.89330 0.82714 0.81278 0.82161 0.92452 0.92448 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.41 36.00 0.37 -0.07 16 2 C 0.01 0.09 7.31 -35.50 -0.26 -0.17 16 3 C -0.22 -2.51 10.78 -39.83 -0.43 -2.94 16 4 C -0.11 -1.65 10.57 -39.38 -0.42 -2.07 16 5 C -0.01 -0.13 7.03 -36.58 -0.26 -0.39 16 6 C 0.27 4.01 6.74 -83.02 -0.56 3.45 16 7 C -0.14 -1.83 9.07 -39.47 -0.36 -2.18 16 8 C -0.07 -0.97 5.39 -104.35 -0.56 -1.53 16 9 C 0.51 6.38 2.91 36.01 0.10 6.48 16 10 F -0.17 -1.84 16.04 2.25 0.04 -1.80 16 11 F -0.17 -2.20 16.59 2.25 0.04 -2.17 16 12 F -0.17 -2.20 16.63 2.25 0.04 -2.16 16 13 C -0.05 -0.72 5.77 -106.26 -0.61 -1.33 16 14 C 0.25 4.16 12.35 -22.47 -0.28 3.88 16 15 N -0.38 -6.68 18.54 41.84 0.78 -5.90 16 16 C 0.19 3.29 7.01 -16.40 -0.12 3.18 16 17 S -0.05 -1.05 20.97 -107.50 -2.25 -3.31 16 18 C 0.07 1.68 4.59 36.01 0.17 1.84 16 19 C -0.53 -13.88 9.13 -34.44 -0.31 -14.19 16 20 H 0.07 1.74 7.71 -52.49 -0.40 1.33 16 21 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 22 N -0.88 -23.89 13.29 55.43 0.74 -23.16 16 23 Si 0.91 20.24 29.54 -169.99 -5.02 15.22 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 N -0.44 -7.80 8.80 -8.33 -0.07 -7.87 16 28 O -0.17 -2.06 10.36 4.80 0.05 -2.01 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.17 2.74 8.06 -52.49 -0.42 2.31 16 34 H 0.16 1.63 7.02 -52.49 -0.37 1.26 16 35 H 0.06 1.44 8.12 -51.92 -0.42 1.01 16 36 H 0.06 1.44 8.12 -51.92 -0.42 1.02 16 37 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -27.95 366.42 -6.63 -34.58 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -2.87 Total: -2.76 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -3.61 Total: -4.19 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 1.44 Total: -36.92 kcal Atomic # 8 Polarization: -2.06 SS G_CDS: 0.05 Total: -2.01 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 0.11 Total: -6.13 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -2.25 Total: -3.31 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.95 -6.63 -34.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038142885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.605 kcal (2) G-P(sol) polarization free energy of solvation -27.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds