Wall clock time and date at job start Tue Mar 31 2020 07:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99924 * 2 1 4 4 H 1.48506 * 109.46922 * 239.99965 * 3 2 1 5 5 H 1.48493 * 109.47429 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47408 * 120.00302 * 3 2 1 7 7 C 1.37881 * 119.99625 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99681 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00308 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47092 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99864 * 262.35438 * 10 9 7 12 12 C 1.50710 * 109.46960 * 274.92972 * 11 10 9 13 13 C 1.34515 * 125.78461 * 89.99630 * 12 11 10 14 14 C 1.41385 * 106.83928 * 179.97438 * 13 12 11 15 15 C 1.34520 * 106.83762 * 0.02562 * 14 13 12 16 16 O 1.34298 * 125.78960 * 269.69115 * 12 11 10 17 17 C 1.34780 * 120.00401 * 82.35265 * 10 9 7 18 18 O 1.21712 * 120.00146 * 182.11662 * 17 10 9 19 19 C 1.46500 * 119.99853 * 2.11294 * 17 10 9 20 20 C 1.36679 * 125.44767 * 172.24273 * 19 17 10 21 21 C 1.37420 * 113.30623 * 179.73517 * 20 19 17 22 22 C 1.33961 * 115.08153 * 0.02562 * 21 20 19 23 23 Br 1.89103 * 124.52723 * 179.97438 * 22 21 20 24 24 S 1.70615 * 110.94242 * 359.97438 * 22 21 20 25 25 H 0.96996 * 119.99939 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.47379 * 59.99204 * 9 7 2 27 27 H 1.09000 * 109.46589 * 299.99379 * 9 7 2 28 28 H 1.08996 * 109.47042 * 34.93116 * 11 10 9 29 29 H 1.08998 * 109.47210 * 154.93437 * 11 10 9 30 30 H 1.07997 * 126.57940 * 0.04386 * 13 12 11 31 31 H 1.07998 * 126.58335 * 179.97438 * 14 13 12 32 32 H 1.08001 * 125.78515 * 180.02562 * 15 14 13 33 33 H 1.07999 * 123.34804 * 359.74079 * 20 19 17 34 34 H 1.08002 * 122.45255 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.5507 -4.2791 -1.2569 12 6 1.5285 -5.3443 -1.5603 13 6 0.3989 -5.1711 -2.2697 14 6 -0.2570 -6.4231 -2.3075 15 6 0.5109 -7.2862 -1.6184 16 8 1.5939 -6.6285 -1.1730 17 6 2.7590 -4.0240 1.1573 18 8 3.5789 -4.9236 1.1525 19 6 2.3766 -3.3883 2.4206 20 6 2.7512 -3.8101 3.6655 21 6 2.2543 -3.0250 4.6780 22 6 1.4974 -1.9945 4.2782 23 35 0.6813 -0.7486 5.4433 24 16 1.3683 -1.9565 2.5774 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8895 27 1 0.6241 -2.5567 0.8904 28 1 2.5634 -3.5472 -2.0646 29 1 3.5358 -4.7365 -1.1655 30 1 0.0588 -4.2524 -2.7243 31 1 -1.1949 -6.6439 -2.7953 32 1 0.2956 -8.3319 -1.4555 33 1 3.3757 -4.6745 3.8366 34 1 2.4583 -3.2247 5.7196 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040214980.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:51 Heat of formation + Delta-G solvation = 21.331792 kcal Electronic energy + Delta-G solvation = -22747.532185 eV Core-core repulsion = 19206.569920 eV Total energy + Delta-G solvation = -3540.962266 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 368.982 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.25362 -39.23778 -37.00999 -35.33332 -33.16258 -32.62778 -31.50625 -30.59329 -28.18862 -27.68171 -25.65509 -23.81963 -23.12642 -21.42785 -20.87199 -19.83621 -18.24915 -17.42220 -17.29117 -16.65013 -16.05480 -15.40850 -15.22848 -14.78429 -14.64404 -14.40884 -13.74849 -13.03503 -12.82796 -12.68187 -12.57316 -12.49786 -12.45591 -12.36434 -12.14995 -11.62544 -11.47097 -11.11615 -10.96707 -10.45029 -10.40076 -10.17026 -10.10253 -9.65273 -9.45337 -9.32253 -8.90853 -8.34106 -8.19908 -8.00271 -7.72313 -6.49615 -4.53944 1.01662 1.73548 1.94388 2.50256 2.66674 2.81083 2.85820 3.12186 3.17524 3.20779 3.28093 3.77576 3.87373 4.12411 4.85031 4.98847 5.15672 5.28795 5.35920 5.67368 5.74533 5.86772 5.92725 6.04369 6.18759 6.28526 6.35510 6.36860 6.58605 6.73567 6.76627 6.80768 7.15425 7.43620 7.45939 7.59672 7.96670 8.46045 8.73824 9.07088 10.54208 Molecular weight = 368.98amu Principal moments of inertia in cm(-1) A = 0.010374 B = 0.004344 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.384149 B = 6443.385402 C = 8004.771027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.078 3.922 3 Si 0.891 3.109 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.229 3.771 10 N -0.594 5.594 11 C 0.197 3.803 12 C -0.020 4.020 13 C -0.199 4.199 14 C -0.216 4.216 15 C -0.050 4.050 16 O -0.168 6.168 17 C 0.593 3.407 18 O -0.553 6.553 19 C -0.284 4.284 20 C -0.082 4.082 21 C -0.131 4.131 22 C -0.315 4.315 23 Br -0.025 7.025 24 S 0.463 5.537 25 H 0.274 0.726 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.197 0.803 33 H 0.143 0.857 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.480 -4.444 2.957 5.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.129 4.129 3 Si 0.717 3.283 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.588 4.588 8 H 0.091 0.909 9 C 0.106 3.894 10 N -0.324 5.324 11 C 0.074 3.926 12 C -0.071 4.071 13 C -0.219 4.219 14 C -0.235 4.235 15 C -0.118 4.118 16 O -0.063 6.063 17 C 0.382 3.618 18 O -0.434 6.434 19 C -0.407 4.407 20 C -0.116 4.116 21 C -0.165 4.165 22 C -0.514 4.514 23 Br 0.058 6.942 24 S 0.741 5.259 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.132 0.868 29 H 0.115 0.885 30 H 0.167 0.833 31 H 0.162 0.838 32 H 0.214 0.786 33 H 0.161 0.839 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.083 -3.433 2.623 4.797 hybrid contribution 0.911 -0.234 0.825 1.251 sum -1.173 -3.667 3.448 5.168 Atomic orbital electron populations 1.69888 1.05937 1.28474 1.46209 1.24933 0.94957 0.99433 0.93620 0.86606 0.80012 0.82084 0.79613 1.19582 1.20567 1.19250 1.21521 0.94480 0.89898 1.52864 0.90899 1.19699 0.88150 0.83170 0.98386 1.48079 1.45016 1.34060 1.05260 1.19726 0.95143 0.90061 0.87679 1.23164 1.00053 0.83429 1.00485 1.21682 0.95829 0.99376 1.05047 1.21799 1.02428 0.93673 1.05650 1.23985 0.87588 0.98649 1.01571 1.84095 1.40211 1.20917 1.61104 1.16995 0.80560 0.81634 0.82589 1.90734 1.34427 1.31397 1.86867 1.24888 1.12728 1.05706 0.97408 1.20307 1.00883 1.00698 0.89755 1.19641 1.01046 0.95448 1.00401 1.27614 1.11618 1.03412 1.08715 1.96537 1.79845 1.55877 1.61916 1.86331 1.36968 1.16718 0.85877 0.91590 0.92340 0.94394 0.86835 0.88468 0.83251 0.83779 0.78619 0.83899 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -20.74 13.29 55.43 0.74 -20.00 16 2 C 0.08 1.81 5.03 -17.82 -0.09 1.72 16 3 Si 0.89 18.62 29.54 -169.99 -5.02 13.60 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.55 -12.42 6.96 -34.44 -0.24 -12.66 16 8 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.23 4.90 4.76 -5.20 -0.02 4.88 16 10 N -0.59 -12.04 2.46 -178.05 -0.44 -12.48 16 11 C 0.20 3.45 5.97 -5.19 -0.03 3.42 16 12 C -0.02 -0.34 6.90 -35.62 -0.25 -0.58 16 13 C -0.20 -3.14 10.81 -39.70 -0.43 -3.57 16 14 C -0.22 -3.00 10.91 -39.70 -0.43 -3.43 16 15 C -0.05 -0.68 12.09 29.42 0.36 -0.33 16 16 O -0.17 -2.92 10.65 5.72 0.06 -2.86 16 17 C 0.59 12.81 7.56 -12.93 -0.10 12.71 16 18 O -0.55 -12.79 16.34 5.18 0.08 -12.70 16 19 C -0.28 -5.82 6.23 -36.82 -0.23 -6.04 16 20 C -0.08 -1.50 10.02 -40.44 -0.41 -1.91 16 21 C -0.13 -2.26 10.05 -41.38 -0.42 -2.67 16 22 C -0.32 -5.77 6.70 29.23 0.20 -5.57 16 23 Br -0.03 -0.41 34.04 -68.01 -2.32 -2.72 16 24 S 0.46 9.37 15.86 -107.50 -1.71 7.66 16 25 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 26 H 0.06 1.28 8.01 -51.93 -0.42 0.87 16 27 H 0.04 0.87 4.48 -22.24 -0.10 0.77 16 28 H 0.11 1.76 8.11 -51.93 -0.42 1.34 16 29 H 0.10 1.70 7.25 -51.93 -0.38 1.32 16 30 H 0.15 2.21 8.06 -52.49 -0.42 1.78 16 31 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.20 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.14 2.44 8.06 -52.49 -0.42 2.02 16 34 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -26.31 331.76 -8.66 -34.97 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -2.97 Total: 3.56 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -2.09 Total: -14.03 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.30 Total: -32.48 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.15 Total: -15.56 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.60 kcal Atomic # 16 Polarization: 9.37 SS G_CDS: -1.71 Total: 7.66 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -2.32 Total: -2.72 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.31 -8.66 -34.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040214980.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.299 kcal (2) G-P(sol) polarization free energy of solvation -26.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds