Wall clock time and date at job start Tue Mar 31 2020 05:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.53004 * 109.47487 * 59.99455 * 3 2 1 5 5 C 1.53001 * 109.47239 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46736 * 60.00467 * 5 4 3 7 7 C 1.53006 * 109.47368 * 299.99585 * 6 5 4 8 8 C 1.53001 * 109.46527 * 60.00290 * 7 6 5 9 9 S 1.65599 * 120.00145 * 179.97438 * 2 1 3 10 10 O 1.42101 * 106.40069 * 203.54073 * 9 2 1 11 11 O 1.42101 * 106.40241 * 336.46277 * 9 2 1 12 12 N 1.65604 * 107.21451 * 90.00096 * 9 2 1 13 13 C 1.46492 * 119.99955 * 269.99503 * 12 9 2 14 14 C 1.50712 * 109.46837 * 95.00659 * 13 12 9 15 15 H 1.07992 * 119.99293 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99782 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99647 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00037 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.46907 * 90.00171 * 18 16 14 20 20 H 1.48501 * 109.46687 * 209.99611 * 18 16 14 21 21 H 1.48496 * 109.47242 * 329.99666 * 18 16 14 22 22 C 1.46499 * 119.99836 * 90.00117 * 12 9 2 23 23 C 1.50709 * 109.47052 * 94.99441 * 22 12 9 24 24 C 1.38669 * 120.42067 * 269.72231 * 23 22 12 25 25 C 1.38629 * 118.41919 * 179.78615 * 24 23 22 26 26 C 1.38230 * 119.16044 * 0.50685 * 25 24 23 27 27 N 1.31849 * 120.76311 * 359.73423 * 26 25 24 28 28 C 1.31892 * 121.72901 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 30 30 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 31 31 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 32 32 H 1.09003 * 109.47380 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47015 * 300.00345 * 4 3 2 34 34 H 1.09000 * 109.46385 * 60.00312 * 4 3 2 35 35 H 1.08995 * 109.47114 * 300.00810 * 5 4 3 36 36 H 1.08993 * 109.47156 * 180.02562 * 5 4 3 37 37 H 1.09007 * 109.47077 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.47454 * 59.99930 * 6 5 4 39 39 H 1.08993 * 109.46907 * 300.00168 * 7 6 5 40 40 H 1.09000 * 109.46878 * 179.97438 * 7 6 5 41 41 H 1.09001 * 109.46671 * 179.97438 * 8 7 6 42 42 H 1.08993 * 109.47626 * 60.00318 * 8 7 6 43 43 H 1.09006 * 109.47370 * 215.00122 * 13 12 9 44 44 H 1.08997 * 109.47387 * 335.00723 * 13 12 9 45 45 H 0.96998 * 120.00132 * 179.97438 * 17 16 14 46 46 H 1.08998 * 109.47341 * 214.99574 * 22 12 9 47 47 H 1.08999 * 109.46862 * 335.00193 * 22 12 9 48 48 H 1.08002 * 120.79024 * 0.02562 * 24 23 22 49 49 H 1.07995 * 120.41721 * 180.22245 * 25 24 23 50 50 H 1.08000 * 119.61745 * 179.75122 * 26 25 24 51 51 H 1.08000 * 119.61832 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 1.8278 2.0712 1.2492 5 6 2.5932 3.3959 1.2494 6 6 2.2241 4.1983 0.0002 7 6 2.5938 3.3960 -1.2491 8 6 1.8284 2.0712 -1.2493 9 16 2.2931 -1.4341 0.0006 10 8 3.5760 -1.1564 0.5450 11 8 1.4114 -2.4063 0.5455 12 7 2.5382 -1.8592 -1.5810 13 6 1.5479 -2.6817 -2.2803 14 6 0.6018 -1.7896 -3.0421 15 1 0.7257 -0.7173 -3.0082 16 6 -0.4217 -2.3425 -3.7821 17 7 -1.2476 -1.5640 -4.4465 18 14 -0.6362 -4.1973 -3.8400 19 1 -1.5346 -4.6262 -2.7381 20 1 -1.2313 -4.5862 -5.1437 21 1 0.6867 -4.8536 -3.6842 22 6 3.7453 -1.4129 -2.2808 23 6 4.7976 -2.4890 -2.2037 24 6 5.7043 -2.5105 -1.1547 25 6 6.6520 -3.5218 -1.1224 26 6 6.6681 -4.4623 -2.1353 27 7 5.7933 -4.4078 -3.1202 28 6 4.8744 -3.4636 -3.1803 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 3.2692 1.0696 -0.0005 33 1 0.7562 2.2702 1.2491 34 1 2.0912 1.4996 2.1391 35 1 3.6648 3.1964 1.2496 36 1 2.3302 3.9673 2.1395 37 1 2.7691 5.1424 0.0005 38 1 1.1525 4.3979 -0.0001 39 1 3.6654 3.1966 -1.2488 40 1 2.3304 3.9676 -2.1391 41 1 2.0914 1.4998 -2.1395 42 1 0.7568 2.2707 -1.2495 43 1 2.0563 -3.3499 -2.9755 44 1 0.9871 -3.2706 -1.5546 45 1 -1.9675 -1.9529 -4.9674 46 1 3.5067 -1.2123 -3.3253 47 1 4.1212 -0.5031 -1.8128 48 1 5.6706 -1.7595 -0.3793 49 1 7.3713 -3.5716 -0.3185 50 1 7.4058 -5.2510 -2.1196 51 1 4.1742 -3.4517 -4.0025 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048301487.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:52 Heat of formation + Delta-G solvation = -51.665665 kcal Electronic energy + Delta-G solvation = -33750.709978 eV Core-core repulsion = 29583.237434 eV Total energy + Delta-G solvation = -4167.472544 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.172 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -39.95431 -38.87485 -36.84221 -36.12557 -35.36690 -34.80376 -32.90878 -32.05369 -31.18597 -30.71382 -29.36581 -28.09846 -25.85567 -25.47986 -23.37991 -22.56676 -22.27949 -22.00356 -21.40200 -19.51991 -18.44137 -17.58839 -17.11095 -16.86503 -16.64752 -16.18833 -15.94109 -15.37250 -15.02869 -14.58688 -14.21939 -14.20119 -14.11252 -13.80925 -13.67308 -13.34524 -13.33003 -12.97412 -12.81610 -12.54256 -12.41699 -12.22743 -12.21978 -12.09835 -11.99179 -11.65641 -11.60709 -11.47005 -11.31281 -11.19658 -11.08671 -11.03294 -10.88923 -10.54589 -10.53266 -10.25778 -10.21398 -10.11222 -9.65576 -9.58198 -9.26952 -8.86338 -8.68062 -8.58707 -8.21252 -6.19599 -4.20013 1.02955 1.35028 1.50285 3.24684 3.30317 3.35242 3.37253 3.87483 4.12546 4.32886 4.62813 4.68111 4.74247 4.79374 4.91867 4.97357 5.06596 5.10891 5.13247 5.16237 5.27744 5.30163 5.38960 5.44719 5.51827 5.52924 5.55085 5.65156 5.73887 5.78647 5.92366 5.93770 5.99009 6.03284 6.06244 6.12098 6.18728 6.20198 6.24530 6.34494 6.37674 6.45846 6.53850 6.54590 6.63809 6.79098 6.89690 6.92450 7.06404 7.32046 7.49545 8.15484 8.36675 8.83869 9.41711 10.92182 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.007356 B = 0.005152 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3805.739201 B = 5433.524811 C = 7762.990803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.999 5.999 3 C 0.154 3.846 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.117 4.117 8 C -0.129 4.129 9 S 2.785 3.215 10 O -0.995 6.995 11 O -0.980 6.980 12 N -0.982 5.982 13 C 0.214 3.786 14 C -0.538 4.538 15 H 0.084 0.916 16 C 0.080 3.920 17 N -0.891 5.891 18 Si 0.864 3.136 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.263 1.263 22 C 0.176 3.824 23 C -0.152 4.152 24 C -0.062 4.062 25 C -0.182 4.182 26 C 0.091 3.909 27 N -0.491 5.491 28 C 0.117 3.883 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.036 0.964 44 H 0.041 0.959 45 H 0.265 0.735 46 H 0.097 0.903 47 H 0.078 0.922 48 H 0.147 0.853 49 H 0.131 0.869 50 H 0.150 0.850 51 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.502 7.839 7.972 15.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.837 5.837 3 C 0.047 3.953 4 C -0.166 4.166 5 C -0.155 4.155 6 C -0.158 4.158 7 C -0.156 4.156 8 C -0.168 4.168 9 S 2.795 3.205 10 O -0.979 6.979 11 O -0.964 6.964 12 N -0.820 5.820 13 C 0.091 3.909 14 C -0.577 4.577 15 H 0.102 0.898 16 C -0.124 4.124 17 N -0.529 5.529 18 Si 0.690 3.310 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.188 1.188 22 C 0.049 3.951 23 C -0.156 4.156 24 C -0.088 4.088 25 C -0.201 4.201 26 C -0.067 4.067 27 N -0.200 5.200 28 C -0.040 4.040 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.116 0.884 47 H 0.096 0.904 48 H 0.165 0.835 49 H 0.149 0.851 50 H 0.167 0.833 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.587 6.678 7.956 14.832 hybrid contribution -0.543 -0.191 0.167 0.599 sum 10.045 6.487 8.123 14.456 Atomic orbital electron populations 1.21555 0.78166 1.02356 1.03783 1.57782 1.15682 1.20822 1.89369 1.20818 0.95953 0.83443 0.95072 1.21874 1.00984 0.95871 0.97850 1.21503 1.00357 0.95742 0.97853 1.21563 1.01384 0.98083 0.94761 1.21523 1.00191 0.96112 0.97748 1.21916 1.01301 0.95582 0.98016 1.01739 0.72610 0.72770 0.73349 1.93496 1.40958 1.85690 1.77773 1.93553 1.66833 1.58718 1.77260 1.57631 1.27874 1.65345 1.31145 1.19610 0.86920 0.91107 0.93295 1.21394 1.11591 0.95362 1.29383 0.89796 1.24801 0.95302 0.97556 0.94728 1.69875 1.17013 1.35072 1.30946 0.87036 0.79430 0.86605 0.77905 1.19815 1.21035 1.18769 1.19894 0.81965 0.92826 1.00419 1.21472 0.98013 0.99812 0.96330 1.21867 0.92455 0.97697 0.96828 1.22124 1.00685 0.96760 1.00572 1.22721 0.96397 0.97426 0.90120 1.67713 1.04064 1.23431 1.24758 1.22817 0.94533 0.89034 0.97661 0.90583 0.90724 0.91894 0.89052 0.91290 0.91816 0.91844 0.92013 0.92278 0.91968 0.92028 0.91768 0.90781 0.91124 0.94649 0.94076 0.92502 0.88435 0.90375 0.83490 0.85125 0.83255 0.82434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 9.72 59.85 0.58 1.98 16 2 N -1.00 -16.07 3.13 -114.60 -0.36 -16.43 16 3 C 0.15 2.06 2.51 -67.93 -0.17 1.89 16 4 C -0.13 -1.46 5.18 -26.73 -0.14 -1.60 16 5 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 6 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 7 C -0.12 -1.22 5.92 -26.73 -0.16 -1.37 16 8 C -0.13 -1.65 5.21 -26.73 -0.14 -1.79 16 9 S 2.79 52.12 6.06 -107.50 -0.65 51.47 16 10 O -1.00 -18.05 13.91 -57.17 -0.80 -18.84 16 11 O -0.98 -21.71 15.29 -57.17 -0.87 -22.59 16 12 N -0.98 -18.52 2.81 -116.94 -0.33 -18.85 16 13 C 0.21 4.75 4.50 -5.19 -0.02 4.73 16 14 C -0.54 -13.30 9.77 -34.43 -0.34 -13.63 16 15 H 0.08 2.17 7.95 -52.49 -0.42 1.76 16 16 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 17 N -0.89 -24.90 13.96 55.43 0.77 -24.13 16 18 Si 0.86 20.38 27.47 -169.99 -4.67 15.71 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.26 -6.01 6.54 56.52 0.37 -5.65 16 22 C 0.18 2.80 5.50 -5.19 -0.03 2.77 16 23 C -0.15 -2.41 5.48 -104.48 -0.57 -2.98 16 24 C -0.06 -0.91 9.43 -39.28 -0.37 -1.28 16 25 C -0.18 -2.35 10.11 -39.44 -0.40 -2.75 16 26 C 0.09 1.23 11.18 -17.55 -0.20 1.03 16 27 N -0.49 -7.93 10.36 -13.25 -0.14 -8.07 16 28 C 0.12 1.90 10.55 -17.55 -0.19 1.72 16 29 H 0.08 1.39 7.87 -51.93 -0.41 0.99 16 30 H 0.07 1.28 7.02 -51.93 -0.36 0.91 16 31 H 0.06 0.83 6.43 -51.93 -0.33 0.49 16 32 H 0.09 1.23 6.91 -51.93 -0.36 0.87 16 33 H 0.07 0.77 6.66 -51.93 -0.35 0.43 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 0.95 7.67 -51.93 -0.40 0.55 16 43 H 0.04 0.78 6.70 -51.93 -0.35 0.43 16 44 H 0.04 0.98 6.34 -51.93 -0.33 0.65 16 45 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.10 1.52 8.06 -51.93 -0.42 1.10 16 47 H 0.08 1.08 7.56 -51.93 -0.39 0.68 16 48 H 0.15 2.12 6.72 -52.49 -0.35 1.77 16 49 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 50 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 51 H 0.16 2.48 7.90 -52.49 -0.41 2.07 16 LS Contribution 409.47 15.07 6.17 6.17 Total: -1.00 -30.45 409.47 -11.70 -42.14 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -8.28 Total: 5.25 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -2.55 Total: -11.84 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -0.05 Total: -67.48 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -1.67 Total: -41.43 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.67 Total: 15.71 kcal Atomic # 16 Polarization: 52.12 SS G_CDS: -0.65 Total: 51.47 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.45 -11.70 -42.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048301487.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.522 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds