Wall clock time and date at job start Tue Mar 31 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 111.00003 * 2 1 4 4 C 1.46898 * 111.00113 * 123.95782 * 2 1 3 5 5 C 1.53001 * 109.47186 * 66.04659 * 4 2 1 6 6 C 1.53002 * 109.47039 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47034 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00345 * 278.46162 * 7 6 5 9 9 C 1.50704 * 109.47315 * 267.94135 * 8 7 6 10 10 H 1.07998 * 119.99364 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99929 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99448 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 120.00119 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.47193 * 90.00514 * 13 11 9 15 15 H 1.48505 * 109.46913 * 210.00390 * 13 11 9 16 16 H 1.48491 * 109.47237 * 330.00111 * 13 11 9 17 17 C 1.34777 * 120.00118 * 98.46151 * 7 6 5 18 18 O 1.21554 * 120.00530 * 186.54778 * 17 7 6 19 19 C 1.47803 * 119.99635 * 6.54240 * 17 7 6 20 20 C 1.39607 * 120.13526 * 330.24854 * 19 17 7 21 21 C 1.37914 * 119.86042 * 180.24842 * 20 19 17 22 22 C 1.38476 * 120.13262 * 359.45872 * 21 20 19 23 23 Br 1.89100 * 119.86136 * 180.27260 * 22 21 20 24 24 C 1.38477 * 120.27457 * 0.24979 * 22 21 20 25 25 C 1.37908 * 120.13280 * 0.02562 * 24 22 21 26 26 H 1.08999 * 109.47291 * 296.04422 * 1 2 3 27 27 H 1.09004 * 109.47304 * 56.04517 * 1 2 3 28 28 H 1.09006 * 109.47372 * 176.04308 * 1 2 3 29 29 H 1.09005 * 109.47071 * 183.95440 * 3 2 1 30 30 H 1.08996 * 109.47407 * 303.95513 * 3 2 1 31 31 H 1.08996 * 109.47019 * 63.95785 * 3 2 1 32 32 H 1.09001 * 109.47056 * 306.04530 * 4 2 1 33 33 H 1.09000 * 109.47148 * 186.04131 * 4 2 1 34 34 H 1.08997 * 109.47589 * 59.99666 * 5 4 2 35 35 H 1.09000 * 109.46646 * 299.99779 * 5 4 2 36 36 H 1.09001 * 109.47190 * 59.99879 * 6 5 4 37 37 H 1.08998 * 109.46954 * 299.99895 * 6 5 4 38 38 H 1.09003 * 109.46963 * 27.93585 * 8 7 6 39 39 H 1.09002 * 109.47464 * 147.93686 * 8 7 6 40 40 H 0.97003 * 119.99287 * 179.97438 * 12 11 9 41 41 H 1.08000 * 120.06731 * 359.97438 * 20 19 17 42 42 H 1.08001 * 119.92561 * 179.72817 * 21 20 19 43 43 H 1.07994 * 119.93020 * 180.02562 * 24 22 21 44 44 H 1.07998 * 120.06392 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6314 -2.2427 0.9702 6 6 2.1792 -3.0404 2.1553 7 7 1.8302 -4.4542 1.9954 8 6 0.4984 -4.9280 2.3800 9 6 0.5279 -5.4032 3.8099 10 1 1.4469 -5.3571 4.3753 11 6 -0.6182 -5.8975 4.3958 12 7 -0.5923 -6.3126 5.6435 13 14 -2.2075 -5.9777 3.4174 14 1 -2.2956 -7.2872 2.7228 15 1 -3.3633 -5.8267 4.3376 16 1 -2.2270 -4.8830 2.4144 17 6 2.7344 -5.3191 1.4943 18 8 2.4094 -6.4646 1.2501 19 6 4.1211 -4.8745 1.2417 20 6 4.3813 -3.5430 0.9124 21 6 5.6769 -3.1354 0.6728 22 6 6.7197 -4.0414 0.7694 23 35 8.4941 -3.4725 0.4468 24 6 6.4687 -5.3621 1.1016 25 6 5.1768 -5.7829 1.3379 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0827 1.3432 -0.0709 30 1 1.5898 1.9163 -0.8524 31 1 1.7044 1.8723 0.9233 32 1 1.5611 -0.3873 2.0628 33 1 3.0797 -0.6612 1.1755 34 1 2.0657 -2.6214 0.0450 35 1 0.5472 -2.3475 0.9322 36 1 1.7445 -2.6616 3.0803 37 1 3.2635 -2.9356 2.1937 38 1 -0.2192 -4.1134 2.2826 39 1 0.2038 -5.7515 1.7295 40 1 -1.3987 -6.6600 6.0558 41 1 3.5692 -2.8346 0.8410 42 1 5.8789 -2.1066 0.4136 43 1 7.2862 -6.0638 1.1758 44 1 4.9823 -6.8131 1.5974 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048333429.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:25 Heat of formation + Delta-G solvation = 30.831017 kcal Electronic energy + Delta-G solvation = -25421.620155 eV Core-core repulsion = 21807.701787 eV Total energy + Delta-G solvation = -3613.918368 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 368.084 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.39527 -38.18526 -37.81491 -35.69191 -33.17569 -32.31792 -31.66714 -31.04151 -29.74251 -27.94673 -27.73400 -26.19335 -23.68455 -23.13394 -22.61304 -21.75082 -20.88696 -19.21459 -17.12325 -16.95088 -16.87604 -15.79969 -15.56620 -15.41680 -15.09064 -14.87987 -14.58824 -14.24931 -14.11136 -13.93666 -13.29216 -13.21127 -13.01355 -12.58220 -12.46436 -12.42390 -12.06519 -11.84725 -11.76173 -11.66854 -11.53815 -11.34726 -11.16134 -11.01154 -10.83835 -10.59254 -10.51446 -10.38748 -10.19936 -9.61003 -9.25919 -9.06167 -8.73038 -8.63515 -8.53383 -7.83757 -6.13430 -4.12933 0.71579 1.19649 1.42844 3.06121 3.25185 3.30944 3.33464 3.53327 3.73225 3.96999 4.35047 4.61940 4.72858 4.75049 4.83997 4.97550 5.07245 5.15547 5.19586 5.23087 5.26427 5.32468 5.33624 5.45020 5.47316 5.52477 5.60041 5.65126 5.79490 5.82954 5.83936 5.99052 6.05612 6.08795 6.27704 6.34652 6.59718 6.65823 6.83355 6.86250 6.89023 7.21778 7.54308 8.09353 8.40425 8.78357 8.90418 9.46199 10.99787 Molecular weight = 368.08amu Principal moments of inertia in cm(-1) A = 0.008485 B = 0.003300 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3299.040638 B = 8483.340286 C =11228.083878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.547 5.547 3 C 0.024 3.976 4 C 0.054 3.946 5 C -0.145 4.145 6 C 0.079 3.921 7 N -0.580 5.580 8 C 0.217 3.783 9 C -0.532 4.532 10 H 0.075 0.925 11 C 0.074 3.926 12 N -0.895 5.895 13 Si 0.875 3.125 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.266 1.266 17 C 0.549 3.451 18 O -0.531 6.531 19 C -0.100 4.100 20 C -0.117 4.117 21 C -0.100 4.100 22 C -0.078 4.078 23 Br -0.057 7.057 24 C -0.099 4.099 25 C -0.060 4.060 26 H 0.027 0.973 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.025 0.975 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.032 0.968 39 H 0.039 0.961 40 H 0.265 0.735 41 H 0.170 0.830 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.539 13.949 -12.027 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.271 5.271 3 C -0.124 4.124 4 C -0.074 4.074 5 C -0.184 4.184 6 C -0.045 4.045 7 N -0.309 5.309 8 C 0.097 3.903 9 C -0.570 4.570 10 H 0.093 0.907 11 C -0.129 4.129 12 N -0.534 5.534 13 Si 0.702 3.298 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.191 1.191 17 C 0.336 3.664 18 O -0.408 6.408 19 C -0.104 4.104 20 C -0.135 4.135 21 C -0.120 4.120 22 C -0.157 4.157 23 Br 0.029 6.971 24 C -0.119 4.119 25 C -0.080 4.080 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.186 0.814 42 H 0.153 0.847 43 H 0.154 0.846 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 15.027 13.242 -12.540 23.631 hybrid contribution -1.554 0.230 0.592 1.679 sum 13.473 13.472 -11.948 22.489 Atomic orbital electron populations 1.22463 0.87259 1.02829 1.00363 1.61978 1.08244 1.13605 1.43269 1.22379 1.00735 0.88902 1.00416 1.22124 1.00139 0.93516 0.91663 1.22158 1.03099 0.93708 0.99406 1.22270 1.01878 0.81739 0.98590 1.47738 1.15226 1.07059 1.60915 1.19702 0.78373 0.95422 0.96843 1.21313 0.98132 1.42340 0.95235 0.90672 1.24841 0.98742 0.94472 0.94795 1.69897 1.28962 1.42178 1.12329 0.86868 0.83350 0.79383 0.80209 1.19807 1.21033 1.19063 1.18099 0.84338 0.85523 0.78411 1.90761 1.79672 1.18479 1.51922 1.20387 0.94850 0.94198 1.00969 1.22529 0.97887 0.95942 0.97144 1.21067 0.91544 0.99477 0.99910 1.21968 0.90889 0.96447 1.06418 1.96701 1.14933 1.90524 1.94979 1.21061 0.97440 0.94056 0.99351 1.21298 0.90693 1.00243 0.95736 0.95464 0.91593 0.90758 0.91337 0.91501 0.95674 0.94048 0.90596 0.90495 0.90480 0.89783 0.88421 0.95016 0.94319 0.92498 0.81356 0.84662 0.84576 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.32 60.06 0.56 0.75 16 2 N -0.55 -5.56 5.02 -251.27 -1.26 -6.82 16 3 C 0.02 0.19 9.57 60.06 0.57 0.77 16 4 C 0.05 0.55 4.88 -3.82 -0.02 0.53 16 5 C -0.15 -1.80 4.49 -26.73 -0.12 -1.92 16 6 C 0.08 1.18 4.85 -4.04 -0.02 1.16 16 7 N -0.58 -11.54 2.47 -176.19 -0.43 -11.98 16 8 C 0.22 5.14 4.27 -5.19 -0.02 5.11 16 9 C -0.53 -14.94 9.93 -34.44 -0.34 -15.28 16 10 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 11 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 12 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 13 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 14 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 17 C 0.55 11.23 7.45 -12.35 -0.09 11.13 16 18 O -0.53 -12.95 16.30 5.32 0.09 -12.86 16 19 C -0.10 -1.61 5.59 -104.96 -0.59 -2.19 16 20 C -0.12 -1.48 7.49 -39.19 -0.29 -1.78 16 21 C -0.10 -1.11 9.77 -39.61 -0.39 -1.50 16 22 C -0.08 -0.89 6.23 -39.41 -0.25 -1.14 16 23 Br -0.06 -0.56 33.69 -68.01 -2.29 -2.85 16 24 C -0.10 -1.19 9.77 -39.61 -0.39 -1.58 16 25 C -0.06 -0.87 9.60 -39.19 -0.38 -1.25 16 26 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.57 8.12 -51.93 -0.42 0.14 16 28 H 0.07 0.79 6.47 -51.93 -0.34 0.46 16 29 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 30 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 31 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 33 H 0.08 0.66 7.77 -51.93 -0.40 0.26 16 34 H 0.08 0.97 7.08 -51.93 -0.37 0.60 16 35 H 0.08 1.05 6.37 -51.93 -0.33 0.72 16 36 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 37 H 0.10 1.28 4.01 -52.12 -0.21 1.07 16 38 H 0.03 0.71 6.93 -51.93 -0.36 0.35 16 39 H 0.04 0.99 6.83 -51.93 -0.35 0.63 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.17 1.95 2.19 -52.49 -0.12 1.84 16 42 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 43 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 44 H 0.14 2.11 7.93 -52.49 -0.42 1.69 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -32.74 373.27 -10.31 -43.05 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.28 Total: 0.93 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.85 Total: -5.15 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.92 Total: -45.23 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.29 Total: -2.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.74 -10.31 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048333429.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.880 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds