Wall clock time and date at job start Tue Mar 31 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34703 * 125.85690 * 2 1 4 4 C 1.36692 * 107.58735 * 179.97438 * 3 2 1 5 5 C 1.47912 * 126.26916 * 179.97438 * 4 3 2 6 6 N 1.29851 * 125.31221 * 176.20111 * 5 4 3 7 7 C 1.32793 * 115.76851 * 179.78708 * 6 5 4 8 8 C 1.47164 * 122.44203 * 180.24166 * 7 6 5 9 9 O 1.21676 * 120.00163 * 174.71419 * 8 7 6 10 10 N 1.34776 * 120.00226 * 354.71519 * 8 7 6 11 11 C 1.36947 * 119.99843 * 6.02912 * 10 8 7 12 12 H 1.08001 * 120.00476 * 318.84302 * 11 10 8 13 13 C 1.38978 * 119.99826 * 138.84075 * 11 10 8 14 14 N 1.31410 * 120.00004 * 344.98690 * 13 11 10 15 15 Si 1.86803 * 120.00139 * 164.98763 * 13 11 10 16 16 H 1.48498 * 109.47100 * 57.49682 * 15 13 11 17 17 H 1.48493 * 109.47267 * 177.49810 * 15 13 11 18 18 H 1.48500 * 109.46963 * 297.50279 * 15 13 11 19 19 C 1.46500 * 120.00162 * 186.03415 * 10 8 7 20 20 C 1.50703 * 109.47134 * 90.88756 * 19 10 8 21 21 C 1.38237 * 119.99908 * 273.37352 * 20 19 10 22 22 C 1.38230 * 120.00021 * 179.76832 * 21 20 19 23 23 C 1.38230 * 120.00015 * 0.48084 * 22 21 20 24 24 C 1.38236 * 120.00232 * 359.79335 * 23 22 21 25 25 C 1.38230 * 120.00344 * 93.64706 * 20 19 10 26 26 C 1.35177 * 115.11338 * 0.50505 * 7 6 5 27 27 S 1.71000 * 109.13290 * 359.73664 * 26 7 6 28 28 C 1.41049 * 107.46588 * 0.25789 * 4 3 2 29 29 N 1.30606 * 108.06207 * 359.56030 * 28 4 3 30 30 H 1.08999 * 109.47459 * 90.00521 * 1 2 3 31 31 H 1.09001 * 109.46782 * 210.00380 * 1 2 3 32 32 H 1.08996 * 109.47294 * 329.99932 * 1 2 3 33 33 H 1.07998 * 126.20231 * 359.96133 * 3 2 1 34 34 H 0.97005 * 120.00352 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.47202 * 210.87889 * 19 10 8 36 36 H 1.08996 * 109.47093 * 330.88623 * 19 10 8 37 37 H 1.08005 * 120.00062 * 359.97438 * 21 20 19 38 38 H 1.08005 * 120.00274 * 180.25402 * 22 21 20 39 39 H 1.08008 * 120.00213 * 179.76894 * 23 22 21 40 40 H 1.08000 * 120.00514 * 179.97438 * 24 23 22 41 41 H 1.08005 * 120.00240 * 359.97438 * 25 20 19 42 42 H 1.07999 * 125.43411 * 179.71118 * 26 7 6 43 43 H 1.08000 * 125.96522 * 179.71613 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2541 1.0917 0.0000 4 6 3.5521 0.6632 0.0006 5 6 4.7568 1.5214 0.0003 6 7 5.9816 1.0957 0.0710 7 6 6.9209 2.0341 0.0516 8 6 8.3562 1.7159 0.1187 9 8 9.1819 2.6018 0.0010 10 7 8.7561 0.4433 0.3106 11 6 7.8348 -0.5699 0.3197 12 1 6.8863 -0.4330 0.8177 13 6 8.1204 -1.7745 -0.3120 14 7 9.1232 -1.8512 -1.1578 15 14 7.0787 -3.2843 0.0411 16 1 5.6576 -2.9900 -0.2738 17 1 7.5474 -4.4163 -0.7979 18 1 7.2029 -3.6469 1.4758 19 6 10.1763 0.1438 0.5096 20 6 10.4958 0.1800 1.9820 21 6 10.8325 1.3765 2.5869 22 6 11.1209 1.4106 3.9384 23 6 11.0823 0.2465 4.6829 24 6 10.7512 -0.9509 4.0768 25 6 10.4577 -0.9841 2.7264 26 6 6.4624 3.3032 -0.0288 27 16 4.7536 3.2791 -0.0884 28 6 3.5323 -0.7471 -0.0051 29 7 2.2851 -1.1346 0.0007 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 1.9214 2.1192 -0.0006 34 1 9.3228 -2.6920 -1.5984 35 1 10.3974 -0.8477 0.1143 36 1 10.7806 0.8860 -0.0117 37 1 10.8670 2.2853 2.0043 38 1 11.3800 2.3461 4.4119 39 1 11.3113 0.2725 5.7381 40 1 10.7214 -1.8605 4.6584 41 1 10.1986 -1.9197 2.2530 42 1 7.0773 4.1908 -0.0513 43 1 4.3974 -1.3936 -0.0105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058200999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:44 Heat of formation + Delta-G solvation = 140.091184 kcal Electronic energy + Delta-G solvation = -30238.574076 eV Core-core repulsion = 26185.466647 eV Total energy + Delta-G solvation = -4053.107429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 368.105 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.17091 -39.60814 -38.59949 -37.27533 -34.86542 -33.50055 -31.81071 -31.34617 -30.65157 -30.25652 -29.13982 -26.91175 -26.25266 -24.99289 -23.97499 -22.09301 -21.88259 -21.19478 -20.53440 -19.78352 -18.69349 -18.00037 -16.95172 -16.89901 -16.03294 -15.60198 -15.19133 -14.90436 -14.69413 -14.46789 -14.45891 -14.23375 -14.15404 -13.84998 -13.35482 -13.30956 -12.92699 -12.79055 -12.76221 -12.66733 -12.45613 -12.08133 -11.94849 -11.57336 -11.35929 -11.10569 -10.90969 -10.81125 -10.67999 -10.41364 -10.30912 -10.15267 -9.61053 -9.48448 -9.25202 -8.90672 -8.81448 -8.53697 -8.30565 -8.06757 -7.69904 -7.35364 -6.26876 -3.93752 0.87888 1.69717 1.84886 1.94866 2.02363 2.12801 2.41343 2.57179 3.18088 3.27221 3.28296 3.39329 4.13936 4.22051 4.35244 4.48981 4.61913 4.72280 4.91290 4.99388 5.11376 5.15886 5.31047 5.44809 5.48384 5.50233 5.60765 5.67250 5.82739 5.90245 5.93800 6.11732 6.16668 6.21773 6.44831 6.62747 6.63871 6.68521 6.81317 6.82928 7.05807 7.08755 7.20497 7.48833 7.64000 7.64392 7.72465 7.95276 8.24416 8.60292 9.15588 9.47740 9.90236 10.75950 Molecular weight = 368.10amu Principal moments of inertia in cm(-1) A = 0.009632 B = 0.003641 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.428870 B = 7688.826872 C = 8977.694181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.374 5.374 3 C 0.077 3.923 4 C -0.162 4.162 5 C 0.129 3.871 6 N -0.387 5.387 7 C 0.065 3.935 8 C 0.529 3.471 9 O -0.601 6.601 10 N -0.406 5.406 11 C -0.307 4.307 12 H 0.122 0.878 13 C 0.039 3.961 14 N -0.871 5.871 15 Si 0.911 3.089 16 H -0.266 1.266 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.140 3.860 20 C -0.077 4.077 21 C -0.107 4.107 22 C -0.132 4.132 23 C -0.134 4.134 24 C -0.132 4.132 25 C -0.095 4.095 26 C -0.238 4.238 27 S 0.086 5.914 28 C 0.100 3.900 29 N -0.299 5.299 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.179 0.821 34 H 0.268 0.732 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.180 0.820 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.142 4.661 4.778 13.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.154 5.154 3 C -0.074 4.074 4 C -0.178 4.178 5 C -0.149 4.149 6 N -0.100 5.100 7 C -0.070 4.070 8 C 0.316 3.684 9 O -0.488 6.488 10 N -0.120 5.120 11 C -0.436 4.436 12 H 0.139 0.861 13 C -0.166 4.166 14 N -0.509 5.509 15 Si 0.738 3.262 16 H -0.192 1.192 17 H -0.212 1.212 18 H -0.199 1.199 19 C 0.017 3.983 20 C -0.078 4.078 21 C -0.125 4.125 22 C -0.150 4.150 23 C -0.153 4.153 24 C -0.150 4.150 25 C -0.113 4.113 26 C -0.380 4.380 27 S 0.342 5.658 28 C -0.090 4.090 29 N -0.119 5.119 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.196 0.804 34 H 0.078 0.922 35 H 0.137 0.863 36 H 0.086 0.914 37 H 0.142 0.858 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.197 0.803 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -13.204 4.134 4.552 14.565 hybrid contribution 0.931 -0.234 0.114 0.967 sum -12.273 3.900 4.666 13.697 Atomic orbital electron populations 1.21874 0.73919 1.04589 1.03495 1.48349 1.06812 1.03769 1.56464 1.22408 0.90234 0.93528 1.01239 1.17782 0.89087 0.92559 1.18391 1.25361 0.93903 0.91404 1.04266 1.67790 0.97171 1.32173 1.12884 1.20390 0.95863 0.87231 1.03502 1.17365 0.84991 0.84267 0.81744 1.90629 1.52797 1.47851 1.57487 1.43294 1.06028 1.04712 1.57965 1.20208 0.98935 0.91607 1.32836 0.86107 1.25421 0.97043 0.99744 0.94351 1.69839 1.29536 1.26832 1.24679 0.86283 0.80479 0.80921 0.78522 1.19162 1.21171 1.19873 1.20549 0.83401 1.05162 0.89159 1.20590 0.96512 0.92759 0.97918 1.21277 0.98481 0.98185 0.94571 1.21035 1.01858 0.97689 0.94453 1.20965 1.02118 0.93134 0.99042 1.21055 1.01275 0.97503 0.95137 1.21131 0.98074 0.98571 0.93568 1.26162 0.97789 1.02622 1.11412 1.83235 1.03106 1.09626 1.69792 1.24389 0.95079 0.93913 0.95582 1.77342 1.01771 1.07445 1.25338 0.90596 0.89116 0.89415 0.80422 0.92156 0.86291 0.91386 0.85848 0.87011 0.87139 0.86902 0.86067 0.80260 0.78502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 11.45 59.85 0.69 1.34 16 2 N -0.37 -4.42 4.00 -67.86 -0.27 -4.69 16 3 C 0.08 0.91 11.25 -16.85 -0.19 0.72 16 4 C -0.16 -2.55 6.09 -105.43 -0.64 -3.19 16 5 C 0.13 2.27 7.45 -14.43 -0.11 2.16 16 6 N -0.39 -8.30 6.82 -8.10 -0.06 -8.35 16 7 C 0.07 1.45 6.50 -84.92 -0.55 0.90 16 8 C 0.53 13.38 7.59 -12.64 -0.10 13.29 16 9 O -0.60 -15.78 15.85 5.21 0.08 -15.70 16 10 N -0.41 -10.29 2.48 -117.40 -0.29 -10.58 16 11 C -0.31 -7.77 7.94 -14.99 -0.12 -7.89 16 12 H 0.12 3.06 5.55 -52.49 -0.29 2.77 16 13 C 0.04 0.97 5.09 -17.46 -0.09 0.88 16 14 N -0.87 -22.82 11.31 55.50 0.63 -22.19 16 15 Si 0.91 19.63 29.58 -169.99 -5.03 14.60 16 16 H -0.27 -5.49 5.79 56.52 0.33 -5.16 16 17 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 C 0.14 3.35 5.18 -5.19 -0.03 3.33 16 20 C -0.08 -1.64 5.46 -104.62 -0.57 -2.21 16 21 C -0.11 -2.13 9.72 -39.58 -0.38 -2.51 16 22 C -0.13 -2.27 10.05 -39.59 -0.40 -2.66 16 23 C -0.13 -2.16 10.05 -39.59 -0.40 -2.56 16 24 C -0.13 -2.25 10.05 -39.58 -0.40 -2.64 16 25 C -0.09 -1.88 9.69 -39.58 -0.38 -2.26 16 26 C -0.24 -4.42 10.56 29.64 0.31 -4.11 16 27 S 0.09 1.25 22.96 -107.50 -2.47 -1.22 16 28 C 0.10 1.70 11.98 -17.01 -0.20 1.49 16 29 N -0.30 -4.68 12.53 30.84 0.39 -4.30 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.12 2.99 5.44 -51.93 -0.28 2.70 16 36 H 0.07 1.67 7.29 -51.93 -0.38 1.29 16 37 H 0.12 2.55 7.71 -52.48 -0.40 2.15 16 38 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 39 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 40 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 42 H 0.18 3.12 8.00 -52.49 -0.42 2.70 16 43 H 0.20 3.63 6.74 -52.49 -0.35 3.28 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -31.83 385.37 -9.49 -41.32 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -4.72 Total: 11.23 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -3.56 Total: -5.93 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.40 Total: -50.12 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.08 Total: -15.70 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.47 Total: -1.22 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.83 -9.49 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058200999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.412 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds