Wall clock time and date at job start Tue Mar 31 2020 07:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00281 * 2 1 4 4 H 1.48493 * 109.47486 * 264.62365 * 3 2 1 5 5 H 1.48503 * 109.46912 * 24.62232 * 3 2 1 6 6 H 1.48501 * 109.47141 * 144.62004 * 3 2 1 7 7 C 1.37883 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00064 * 356.67640 * 7 2 1 9 9 C 1.50700 * 119.99779 * 176.67838 * 7 2 1 10 10 N 1.46496 * 109.46778 * 174.56326 * 9 7 2 11 11 C 1.46499 * 119.99999 * 263.02000 * 10 9 7 12 12 C 1.50703 * 109.47363 * 270.00300 * 11 10 9 13 13 C 1.38679 * 120.41710 * 269.72108 * 12 11 10 14 14 C 1.38621 * 118.41981 * 179.78073 * 13 12 11 15 15 C 1.38229 * 119.16234 * 0.51438 * 14 13 12 16 16 N 1.31860 * 120.75947 * 359.72788 * 15 14 13 17 17 C 1.31884 * 121.72852 * 359.97438 * 16 15 14 18 18 C 1.34776 * 120.00114 * 83.02619 * 10 9 7 19 19 O 1.21636 * 120.00302 * 182.65553 * 18 10 9 20 20 C 1.47296 * 120.00008 * 2.64518 * 18 10 9 21 21 C 1.35165 * 122.41867 * 184.66770 * 20 18 10 22 22 S 1.71011 * 109.16330 * 179.75399 * 21 20 18 23 23 C 1.76005 * 90.59216 * 0.34280 * 22 21 20 24 24 C 1.47135 * 125.32631 * 179.91510 * 23 22 21 25 25 C 1.36232 * 125.96342 * 354.39666 * 24 23 22 26 26 C 1.40770 * 106.72802 * 179.97438 * 25 24 23 27 27 C 1.34835 * 107.06701 * 359.97438 * 26 25 24 28 28 O 1.34247 * 108.72628 * 0.26465 * 27 26 25 29 29 N 1.30123 * 109.33704 * 359.65104 * 23 22 21 30 30 H 0.97000 * 119.99851 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.46845 * 54.56638 * 9 7 2 32 32 H 1.08998 * 109.47303 * 294.56466 * 9 7 2 33 33 H 1.08997 * 109.47270 * 30.00352 * 11 10 9 34 34 H 1.09004 * 109.46910 * 150.00294 * 11 10 9 35 35 H 1.08002 * 120.78537 * 0.02562 * 13 12 11 36 36 H 1.07996 * 120.42052 * 180.21868 * 14 13 12 37 37 H 1.07998 * 119.62242 * 179.74613 * 15 14 13 38 38 H 1.08002 * 119.61976 * 179.97438 * 17 16 15 39 39 H 1.08001 * 125.42092 * 0.02562 * 21 20 18 40 40 H 1.07997 * 126.63540 * 0.02562 * 25 24 23 41 41 H 1.07998 * 126.46397 * 180.02562 * 26 25 24 42 42 H 1.08003 * 125.63784 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6104 1.9808 -1.3938 5 1 1.3945 2.6828 0.5833 6 1 3.4853 1.4755 0.8106 7 6 2.0045 -1.1941 -0.0005 8 1 1.4659 -2.1287 0.0533 9 6 3.5096 -1.1952 -0.0762 10 7 4.0048 -2.5662 0.0692 11 6 4.4602 -3.0459 1.3764 12 6 5.9331 -2.7660 1.5291 13 6 6.8715 -3.7044 1.1265 14 6 8.2154 -3.4020 1.2817 15 6 8.5728 -2.1885 1.8386 16 7 7.6528 -1.3220 2.2149 17 6 6.3655 -1.5735 2.0769 18 6 4.0417 -3.3863 -0.9997 19 8 4.4072 -4.5392 -0.8695 20 6 3.6391 -2.8867 -2.3255 21 6 3.5688 -3.6885 -3.4114 22 16 3.0633 -2.7652 -4.7592 23 6 2.9841 -1.3178 -3.7610 24 6 2.5932 0.0202 -4.2321 25 6 2.3374 0.3706 -5.5235 26 6 2.0019 1.7377 -5.5136 27 6 2.0674 2.1519 -4.2321 28 8 2.4300 1.1141 -3.4617 29 7 3.3199 -1.6174 -2.5401 30 1 -0.4850 0.8401 0.0004 31 1 3.9140 -0.5760 0.7245 32 1 3.8253 -0.7951 -1.0396 33 1 3.9092 -2.5320 2.1641 34 1 4.2846 -4.1191 1.4510 35 1 6.5625 -4.6466 0.6984 36 1 8.9735 -4.1077 0.9758 37 1 9.6176 -1.9470 1.9668 38 1 5.6409 -0.8394 2.3972 39 1 3.7917 -4.7452 -3.4247 40 1 2.3823 -0.2757 -6.3876 41 1 1.7404 2.3407 -6.3705 42 1 1.8657 3.1541 -3.8836 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058201112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:42 Heat of formation + Delta-G solvation = 94.103808 kcal Electronic energy + Delta-G solvation = -30940.953224 eV Core-core repulsion = 26788.132971 eV Total energy + Delta-G solvation = -4152.820253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 369.093 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.31209 -40.37819 -39.78187 -38.02095 -35.43412 -33.01412 -32.88875 -32.12535 -31.59183 -31.28328 -28.72991 -28.07696 -26.78262 -24.91031 -23.44147 -23.06777 -22.26481 -21.72106 -21.39927 -19.94749 -18.75440 -17.94961 -17.37576 -17.02464 -16.79522 -16.20730 -15.93295 -15.89009 -15.40347 -15.28986 -15.09090 -14.52385 -14.08985 -13.86542 -13.50045 -13.44667 -13.21324 -12.96250 -12.88399 -12.79159 -12.74755 -12.37751 -12.36437 -12.14693 -11.88961 -11.60067 -11.23856 -10.92108 -10.55818 -10.21404 -9.97351 -9.81343 -9.67098 -9.62255 -9.48365 -9.30769 -9.11685 -9.02187 -8.80171 -8.43748 -7.94546 -7.72773 -6.04927 -4.01020 0.42476 1.16596 1.20543 1.43506 1.71544 1.77896 2.46867 2.94477 3.21206 3.35769 3.37584 3.49918 3.64990 3.86421 4.06327 4.22968 4.46062 4.58275 4.92334 4.98218 5.02630 5.06628 5.13224 5.18026 5.23178 5.30226 5.31541 5.45270 5.56152 5.76239 5.81243 5.84113 5.93126 6.01046 6.08604 6.16085 6.26721 6.44830 6.50488 6.53444 6.84413 7.08007 7.21611 7.41587 7.64434 7.79223 8.05259 8.09975 8.48705 8.71370 8.96916 9.56513 11.07980 Molecular weight = 369.09amu Principal moments of inertia in cm(-1) A = 0.009092 B = 0.004167 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.961901 B = 6717.454797 C = 7997.939023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.083 3.917 3 Si 0.861 3.139 4 H -0.248 1.248 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.069 0.931 9 C 0.186 3.814 10 N -0.565 5.565 11 C 0.158 3.842 12 C -0.146 4.146 13 C -0.055 4.055 14 C -0.180 4.180 15 C 0.091 3.909 16 N -0.489 5.489 17 C 0.113 3.887 18 C 0.593 3.407 19 O -0.563 6.563 20 C 0.037 3.963 21 C -0.223 4.223 22 S 0.180 5.820 23 C 0.102 3.898 24 C 0.063 3.937 25 C -0.183 4.183 26 C -0.217 4.217 27 C -0.021 4.021 28 O -0.129 6.129 29 N -0.365 5.365 30 H 0.262 0.738 31 H 0.024 0.976 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.190 0.810 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.727 -1.792 -8.935 13.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.119 4.119 3 Si 0.688 3.312 4 H -0.173 1.173 5 H -0.219 1.219 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.087 0.913 9 C 0.065 3.935 10 N -0.293 5.293 11 C 0.034 3.966 12 C -0.149 4.149 13 C -0.082 4.082 14 C -0.200 4.200 15 C -0.067 4.067 16 N -0.198 5.198 17 C -0.044 4.044 18 C 0.379 3.621 19 O -0.444 6.444 20 C -0.100 4.100 21 C -0.365 4.365 22 S 0.437 5.563 23 C -0.174 4.174 24 C 0.009 3.991 25 C -0.206 4.206 26 C -0.236 4.236 27 C -0.092 4.092 28 O -0.022 6.022 29 N -0.079 5.079 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.157 0.843 36 H 0.149 0.851 37 H 0.168 0.832 38 H 0.173 0.827 39 H 0.207 0.793 40 H 0.169 0.831 41 H 0.170 0.830 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 9.868 -1.316 -8.776 13.271 hybrid contribution 0.013 -0.050 0.421 0.424 sum 9.881 -1.365 -8.355 13.011 Atomic orbital electron populations 1.69910 1.06251 1.26744 1.50797 1.24693 0.94472 0.98601 0.94175 0.87088 0.79980 0.84067 0.80045 1.17327 1.21882 1.19581 1.21153 0.88938 0.94526 1.50545 0.91293 1.20656 0.96041 0.77010 0.99756 1.47862 1.59524 1.15435 1.06450 1.20245 0.88437 1.01547 0.86352 1.21418 0.97907 0.95728 0.99884 1.21674 0.92453 0.99485 0.94589 1.22113 0.96869 0.98911 1.02094 1.22712 0.99019 0.90168 0.94754 1.67702 1.01986 1.33036 1.17043 1.22785 0.92324 0.94842 0.94439 1.17079 0.77541 0.84648 0.82848 1.90694 1.50823 1.17527 1.85403 1.20149 1.05371 0.88352 0.96109 1.26490 1.07500 1.06403 0.96110 1.83409 1.60900 1.00089 1.11884 1.24622 1.06244 0.94739 0.91746 1.18961 1.06734 0.84859 0.88596 1.21683 1.06797 0.96672 0.95433 1.21618 1.08951 0.95394 0.97662 1.24252 1.02459 0.92562 0.89916 1.84567 1.65269 1.16143 1.36221 1.67749 1.09639 1.15857 1.14628 0.92843 0.95842 0.89894 0.88654 0.89226 0.84340 0.85133 0.83199 0.82668 0.79278 0.83112 0.83046 0.78143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 2 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 3 Si 0.86 20.61 27.46 -169.99 -4.67 15.94 16 4 H -0.25 -5.59 5.11 56.52 0.29 -5.30 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.34 6.51 56.52 0.37 -5.97 16 7 C -0.51 -13.92 9.02 -34.44 -0.31 -14.23 16 8 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 9 C 0.19 4.34 3.88 -5.20 -0.02 4.32 16 10 N -0.57 -11.84 2.46 -177.75 -0.44 -12.28 16 11 C 0.16 2.80 5.55 -5.19 -0.03 2.77 16 12 C -0.15 -2.38 5.48 -104.48 -0.57 -2.95 16 13 C -0.06 -0.82 9.86 -39.28 -0.39 -1.21 16 14 C -0.18 -2.29 10.11 -39.44 -0.40 -2.69 16 15 C 0.09 1.21 11.18 -17.54 -0.20 1.01 16 16 N -0.49 -7.84 10.36 -13.25 -0.14 -7.98 16 17 C 0.11 1.86 10.86 -17.55 -0.19 1.67 16 18 C 0.59 12.46 7.58 -12.58 -0.10 12.36 16 19 O -0.56 -11.80 16.00 5.25 0.08 -11.72 16 20 C 0.04 0.73 6.43 -84.94 -0.55 0.19 16 21 C -0.22 -3.57 10.56 29.64 0.31 -3.26 16 22 S 0.18 2.44 22.94 -107.50 -2.47 -0.02 16 23 C 0.10 1.85 7.46 -14.67 -0.11 1.74 16 24 C 0.06 1.11 7.24 -36.69 -0.27 0.84 16 25 C -0.18 -2.52 10.63 -39.35 -0.42 -2.94 16 26 C -0.22 -2.73 10.88 -39.83 -0.43 -3.16 16 27 C -0.02 -0.30 12.08 29.53 0.36 0.06 16 28 O -0.13 -2.49 8.70 4.52 0.04 -2.45 16 29 N -0.36 -7.67 5.99 -8.28 -0.05 -7.72 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.02 0.55 6.66 -51.93 -0.35 0.20 16 32 H 0.08 2.01 4.77 -53.37 -0.25 1.75 16 33 H 0.10 1.63 8.02 -51.93 -0.42 1.21 16 34 H 0.09 1.54 7.34 -51.93 -0.38 1.16 16 35 H 0.14 2.02 7.84 -52.49 -0.41 1.61 16 36 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.16 2.47 8.06 -52.49 -0.42 2.04 16 39 H 0.19 2.61 8.00 -52.49 -0.42 2.19 16 40 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 41 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.20 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -33.93 378.20 -9.03 -42.96 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -4.47 Total: 6.86 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -3.40 Total: -3.27 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.15 Total: -54.01 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.12 Total: -14.16 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.47 Total: -0.02 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.93 -9.03 -42.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058201112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.068 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds