Wall clock time and date at job start Tue Mar 31 2020 06:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34775 * 120.00035 * 2 1 4 4 O 1.21550 * 119.99951 * 359.97438 * 3 2 1 5 5 C 1.47873 * 120.00182 * 180.02562 * 3 2 1 6 6 C 1.39674 * 119.97453 * 180.02562 * 5 3 2 7 7 C 1.37648 * 120.02298 * 179.97438 * 6 5 3 8 8 C 1.39891 * 119.97650 * 359.97438 * 7 6 5 9 9 C 1.47255 * 120.02430 * 179.97438 * 8 7 6 10 10 C 1.34741 * 119.99880 * 179.72157 * 9 8 7 11 11 C 1.46615 * 120.00138 * 180.27723 * 10 9 8 12 12 O 1.21673 * 119.99934 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00056 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99871 * 359.97438 * 13 11 10 15 15 C 1.50693 * 109.47589 * 89.99995 * 14 13 11 16 16 H 1.08005 * 119.99578 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00422 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00176 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00066 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47478 * 89.99398 * 19 17 15 21 21 H 1.48499 * 109.47229 * 210.00067 * 19 17 15 22 22 H 1.48509 * 109.46914 * 329.99436 * 19 17 15 23 23 C 1.46495 * 119.99663 * 180.02562 * 13 11 10 24 24 C 1.50700 * 109.47656 * 89.99870 * 23 13 11 25 25 C 1.34511 * 125.78767 * 89.99235 * 24 23 13 26 26 C 1.41387 * 106.83760 * 180.02562 * 25 24 23 27 27 C 1.34518 * 106.84069 * 0.02562 * 26 25 24 28 28 O 1.34302 * 125.78422 * 269.69409 * 24 23 13 29 29 C 1.39880 * 119.94705 * 0.25226 * 8 7 6 30 30 C 1.37653 * 119.97728 * 359.51280 * 29 8 7 31 31 H 1.09007 * 109.46708 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46925 * 299.99814 * 1 2 3 33 33 H 1.08998 * 109.47162 * 60.00122 * 1 2 3 34 34 H 0.96995 * 119.99631 * 180.02562 * 2 1 3 35 35 H 1.07994 * 119.98794 * 359.97128 * 6 5 3 36 36 H 1.08001 * 120.01510 * 180.02562 * 7 6 5 37 37 H 1.08002 * 120.00427 * 0.02562 * 9 8 7 38 38 H 1.08002 * 119.99639 * 0.27545 * 10 9 8 39 39 H 1.09002 * 109.47055 * 210.00577 * 14 13 11 40 40 H 1.09004 * 109.47419 * 329.99956 * 14 13 11 41 41 H 0.96999 * 120.00170 * 180.02562 * 18 17 15 42 42 H 1.09006 * 109.46816 * 209.99848 * 23 13 11 43 43 H 1.08996 * 109.47232 * 329.99390 * 23 13 11 44 44 H 1.07998 * 126.58383 * 359.96836 * 25 24 23 45 45 H 1.07997 * 126.57768 * 179.97438 * 26 25 24 46 46 H 1.07995 * 125.78789 * 180.02562 * 27 26 25 47 47 H 1.08009 * 120.01258 * 179.74421 * 29 8 7 48 48 H 1.08003 * 119.98620 * 180.20355 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5312 2.2198 -0.0005 5 6 3.6177 1.1672 -0.0006 6 6 4.3155 2.3772 0.0000 7 6 5.6920 2.3784 0.0000 8 6 6.3920 1.1672 0.0000 9 6 7.8645 1.1672 -0.0006 10 6 8.5383 0.0004 0.0051 11 6 10.0044 0.0004 0.0106 12 8 10.6127 1.0541 0.0097 13 7 10.6783 -1.1668 0.0158 14 6 9.9458 -2.4355 0.0164 15 6 9.6994 -2.8740 -1.4041 16 1 10.0535 -2.2684 -2.2253 17 6 9.0230 -4.0488 -1.6555 18 7 8.8084 -4.4318 -2.8952 19 14 8.4112 -5.0966 -0.2352 20 1 7.0364 -4.6746 0.1351 21 1 8.3978 -6.5244 -0.6432 22 1 9.3132 -4.9238 0.9318 23 6 12.1432 -1.1667 0.0219 24 6 12.6397 -1.1638 1.4448 25 6 12.8988 -2.2534 2.1897 26 6 13.3389 -1.7917 3.4515 27 6 13.3218 -0.4475 3.4023 28 8 12.9039 -0.0728 2.1821 29 6 5.6920 -0.0439 -0.0054 30 6 4.3155 -0.0427 -0.0005 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.9500 -0.8400 -0.0004 35 1 3.7749 3.3120 0.0003 36 1 6.2314 3.3140 0.0008 37 1 8.4046 2.1025 -0.0006 38 1 7.9982 -0.9349 0.0055 39 1 10.5331 -3.1938 0.5342 40 1 8.9916 -2.3039 0.5267 41 1 8.3322 -5.2581 -3.0721 42 1 12.5087 -2.0577 -0.4886 43 1 12.5086 -0.2778 -0.4922 44 1 12.7906 -3.2833 1.8832 45 1 13.6316 -2.4012 4.2936 46 1 13.6023 0.2175 4.2057 47 1 6.2314 -0.9796 -0.0095 48 1 3.7749 -0.9777 -0.0013 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058201374.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:56 Heat of formation + Delta-G solvation = -2.154974 kcal Electronic energy + Delta-G solvation = -31804.550333 eV Core-core repulsion = 27406.062121 eV Total energy + Delta-G solvation = -4398.488213 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.30167 -40.31732 -39.36046 -38.46378 -35.47375 -34.91918 -33.97990 -32.87136 -32.60173 -31.28309 -30.84706 -29.77152 -28.02755 -27.25252 -25.90382 -24.05730 -22.81292 -22.72446 -21.48064 -21.41662 -20.53567 -19.94466 -18.48602 -18.13925 -17.39551 -17.09103 -16.86414 -16.29000 -15.97772 -15.46688 -15.43030 -15.19442 -15.07501 -14.83944 -14.51382 -14.27331 -13.95389 -13.65386 -13.40220 -13.39296 -13.17904 -12.77222 -12.65839 -12.62202 -12.60479 -12.53720 -12.46066 -12.33378 -11.93442 -11.58806 -11.50019 -11.07309 -10.95121 -10.73940 -10.43290 -10.23186 -10.18177 -9.78143 -9.69688 -9.43628 -9.42546 -9.12074 -8.83730 -8.32941 -8.27557 -7.95811 -6.31783 -4.34628 0.31888 1.29869 1.81368 1.91699 2.77342 2.83968 2.95907 3.05898 3.16502 3.18124 3.23672 3.66507 3.79018 3.99570 4.15565 4.46831 4.62141 4.74896 4.82282 4.94582 4.95946 4.98050 5.18663 5.20801 5.21378 5.22840 5.27639 5.42774 5.44361 5.48744 5.63634 5.72099 5.93742 5.94028 5.98345 6.07181 6.12288 6.13665 6.19001 6.20589 6.26237 6.31293 6.51703 6.53917 6.69515 6.70387 6.79498 7.11355 7.20179 7.30727 7.39235 7.92840 7.96856 8.26648 8.67761 8.77004 9.26203 10.80499 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.008620 B = 0.002538 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.302017 B =11029.336014 C =13048.668805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.560 3.440 4 O -0.540 6.540 5 C -0.143 4.143 6 C -0.061 4.061 7 C -0.112 4.112 8 C -0.025 4.025 9 C -0.066 4.066 10 C -0.158 4.158 11 C 0.548 3.452 12 O -0.559 6.559 13 N -0.580 5.580 14 C 0.207 3.793 15 C -0.544 4.544 16 H 0.081 0.919 17 C 0.079 3.921 18 N -0.886 5.886 19 Si 0.866 3.134 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.263 1.263 23 C 0.196 3.804 24 C -0.016 4.016 25 C -0.205 4.205 26 C -0.218 4.218 27 C -0.050 4.050 28 O -0.165 6.165 29 C -0.112 4.112 30 C -0.083 4.083 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.403 0.597 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.037 0.963 40 H 0.031 0.969 41 H 0.267 0.733 42 H 0.116 0.884 43 H 0.094 0.906 44 H 0.148 0.852 45 H 0.144 0.856 46 H 0.197 0.803 47 H 0.140 0.860 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.934 4.949 9.721 12.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.349 3.651 4 O -0.418 6.418 5 C -0.146 4.146 6 C -0.079 4.079 7 C -0.130 4.130 8 C -0.026 4.026 9 C -0.086 4.086 10 C -0.178 4.178 11 C 0.339 3.661 12 O -0.440 6.440 13 N -0.310 5.310 14 C 0.087 3.913 15 C -0.582 4.582 16 H 0.099 0.901 17 C -0.125 4.125 18 N -0.523 5.523 19 Si 0.692 3.308 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.187 1.187 23 C 0.072 3.928 24 C -0.067 4.067 25 C -0.225 4.225 26 C -0.237 4.237 27 C -0.118 4.118 28 O -0.060 6.060 29 C -0.130 4.130 30 C -0.102 4.102 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.239 0.761 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.078 0.922 42 H 0.134 0.866 43 H 0.112 0.888 44 H 0.166 0.834 45 H 0.162 0.838 46 H 0.214 0.786 47 H 0.158 0.842 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.211 6.344 9.473 12.983 hybrid contribution -0.157 -1.691 0.806 1.880 sum -6.368 4.653 10.279 12.957 Atomic orbital electron populations 1.21554 0.79261 1.02365 1.02416 1.45740 1.07928 1.08830 1.76089 1.18376 0.87406 0.83619 0.75724 1.90756 1.70057 1.31196 1.49817 1.19914 0.92295 0.94686 1.07688 1.21129 0.93723 0.97538 0.95551 1.21329 0.93679 0.97699 1.00331 1.19286 0.93086 0.93290 0.96915 1.22243 0.91175 0.99091 0.96109 1.23362 0.93988 0.99647 1.00799 1.18305 0.88119 0.83379 0.76333 1.90740 1.70416 1.31196 1.51661 1.47840 1.05019 1.07516 1.70592 1.19913 0.92013 0.80806 0.98600 1.21371 1.37950 1.07850 0.91060 0.90098 1.24847 0.95245 0.96994 0.95400 1.69885 1.40491 1.23302 1.18639 0.87010 0.80000 0.80598 0.83183 1.19799 1.20751 1.18729 1.19736 0.81021 1.05240 0.86806 1.23222 1.03346 0.84011 0.96162 1.21669 1.06840 0.99685 0.94287 1.21793 1.07885 0.94762 0.99243 1.23988 1.04669 0.96049 0.87105 1.84118 1.64659 1.35134 1.22134 1.21506 0.93868 0.98490 0.99159 1.21179 0.94469 0.96732 0.97821 0.90499 0.92135 0.92075 0.76145 0.84584 0.84763 0.84685 0.84129 0.94486 0.95115 0.92248 0.86613 0.88753 0.83417 0.83830 0.78624 0.84238 0.85539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.70 59.85 0.64 1.30 16 2 N -0.73 -6.78 5.66 -68.03 -0.39 -7.16 16 3 C 0.56 7.05 7.77 -12.32 -0.10 6.95 16 4 O -0.54 -8.47 16.33 5.32 0.09 -8.38 16 5 C -0.14 -1.75 5.88 -104.88 -0.62 -2.36 16 6 C -0.06 -0.74 9.57 -39.26 -0.38 -1.11 16 7 C -0.11 -1.34 9.77 -39.18 -0.38 -1.72 16 8 C -0.03 -0.34 5.87 -105.00 -0.62 -0.96 16 9 C -0.07 -1.01 9.45 -37.16 -0.35 -1.36 16 10 C -0.16 -2.75 8.61 -37.44 -0.32 -3.07 16 11 C 0.55 10.93 7.61 -12.88 -0.10 10.83 16 12 O -0.56 -12.10 15.81 5.21 0.08 -12.01 16 13 N -0.58 -11.39 2.44 -178.02 -0.43 -11.82 16 14 C 0.21 4.28 3.94 -5.20 -0.02 4.26 16 15 C -0.54 -13.35 9.94 -34.45 -0.34 -13.69 16 16 H 0.08 2.25 8.06 -52.48 -0.42 1.82 16 17 C 0.08 2.00 5.47 -17.82 -0.10 1.91 16 18 N -0.89 -24.36 13.96 55.43 0.77 -23.59 16 19 Si 0.87 18.38 27.47 -169.99 -4.67 13.71 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 22 H -0.26 -5.31 6.54 56.52 0.37 -4.94 16 23 C 0.20 3.43 5.94 -5.20 -0.03 3.40 16 24 C -0.02 -0.26 6.90 -35.63 -0.25 -0.51 16 25 C -0.20 -3.15 10.81 -39.70 -0.43 -3.58 16 26 C -0.22 -2.92 10.91 -39.70 -0.43 -3.35 16 27 C -0.05 -0.66 12.09 29.42 0.36 -0.31 16 28 O -0.17 -2.81 10.65 5.70 0.06 -2.75 16 29 C -0.11 -1.47 9.39 -39.18 -0.37 -1.84 16 30 C -0.08 -0.95 9.52 -39.26 -0.37 -1.32 16 31 H 0.08 0.35 8.14 -51.92 -0.42 -0.08 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.40 2.78 6.85 -40.82 -0.28 2.50 16 35 H 0.14 1.56 7.63 -52.49 -0.40 1.16 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 37 H 0.14 2.01 7.52 -52.49 -0.39 1.61 16 38 H 0.14 2.41 4.21 -52.49 -0.22 2.19 16 39 H 0.04 0.75 7.13 -51.93 -0.37 0.38 16 40 H 0.03 0.61 5.52 -51.93 -0.29 0.32 16 41 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.12 1.88 8.07 -51.93 -0.42 1.46 16 43 H 0.09 1.67 7.42 -51.93 -0.39 1.28 16 44 H 0.15 2.12 8.06 -52.49 -0.42 1.69 16 45 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 46 H 0.20 1.78 8.06 -52.49 -0.42 1.36 16 47 H 0.14 1.85 6.15 -52.48 -0.32 1.52 16 48 H 0.13 1.07 6.38 -52.48 -0.34 0.74 16 LS Contribution 413.15 15.07 6.23 6.23 Total: -1.00 -33.02 413.15 -8.43 -41.45 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -5.96 Total: 10.87 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -4.20 Total: -6.53 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.05 Total: -42.58 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.23 Total: -23.15 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -4.67 Total: 13.71 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.02 -8.43 -41.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058201374.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.292 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds