Wall clock time and date at job start Tue Mar 31 2020 06:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.46922 * 2 1 4 4 C 1.35831 * 117.00000 * 179.97438 * 3 2 1 5 5 C 1.39474 * 119.73979 * 0.02562 * 4 3 2 6 6 C 1.36304 * 120.55349 * 179.72678 * 5 4 3 7 7 C 1.40189 * 119.90872 * 0.27085 * 6 5 4 8 8 C 1.41515 * 133.26157 * 179.97438 * 7 6 5 9 9 C 1.35925 * 107.75866 * 180.02562 * 8 7 6 10 10 C 1.46919 * 125.44454 * 179.97438 * 9 8 7 11 11 O 1.21666 * 119.99918 * 339.18258 * 10 9 8 12 12 N 1.34773 * 119.99770 * 159.18743 * 10 9 8 13 13 C 1.46500 * 120.00081 * 184.69333 * 12 10 9 14 14 C 1.50704 * 109.47008 * 89.99560 * 13 12 10 15 15 H 1.07989 * 120.00359 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99726 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99895 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99882 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47275 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47021 * 120.00184 * 18 16 14 21 21 H 1.48496 * 109.47593 * 240.00185 * 18 16 14 22 22 C 1.46507 * 120.00408 * 4.68710 * 12 10 9 23 23 C 1.50699 * 109.46871 * 93.19015 * 22 12 10 24 24 C 1.34508 * 125.79127 * 89.71688 * 23 22 12 25 25 C 1.41379 * 106.84282 * 179.88655 * 24 23 22 26 26 C 1.34506 * 106.84058 * 0.37694 * 25 24 23 27 27 O 1.34303 * 125.78841 * 270.02911 * 23 22 12 28 28 N 1.38313 * 109.11168 * 359.97438 * 9 8 7 29 29 H 0.96993 * 125.62975 * 179.97438 * 28 9 8 30 30 C 1.37530 * 108.74342 * 359.97438 * 28 9 8 31 31 C 1.38223 * 119.74024 * 180.23149 * 4 3 2 32 32 H 1.08994 * 109.47604 * 299.99761 * 1 2 3 33 33 H 1.09003 * 109.47268 * 60.00168 * 1 2 3 34 34 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.47534 * 240.00414 * 2 1 3 36 36 H 1.08996 * 109.46896 * 119.99720 * 2 1 3 37 37 H 1.07992 * 119.72289 * 359.97438 * 5 4 3 38 38 H 1.08004 * 120.04022 * 180.25174 * 6 5 4 39 39 H 1.07996 * 126.12572 * 0.02562 * 8 7 6 40 40 H 1.08996 * 109.47570 * 209.99725 * 13 12 10 41 41 H 1.09005 * 109.47051 * 329.99532 * 13 12 10 42 42 H 0.97000 * 119.99424 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.47051 * 213.19135 * 22 12 10 44 44 H 1.09001 * 109.46618 * 333.19269 * 22 12 10 45 45 H 1.08001 * 126.57960 * 0.03108 * 24 23 22 46 46 H 1.08008 * 126.58006 * 180.15958 * 25 24 23 47 47 H 1.08005 * 125.79312 * 179.74512 * 26 25 24 48 48 H 1.07993 * 120.11704 * 0.04384 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3529 1.5254 0.0005 5 6 4.1975 0.4155 0.0005 6 6 5.5512 0.5749 -0.0045 7 6 6.1033 1.8635 -0.0040 8 6 7.4325 2.3491 -0.0078 9 6 7.3777 3.7072 -0.0045 10 6 8.5393 4.6068 -0.0061 11 8 9.6245 4.1997 0.3638 12 7 8.4026 5.8830 -0.4174 13 6 9.5790 6.7504 -0.5170 14 6 10.1732 6.6344 -1.8971 15 1 9.7202 5.9798 -2.6268 16 6 11.2959 7.3634 -2.2278 17 7 11.8484 8.1596 -1.3386 18 14 12.0329 7.2192 -3.9381 19 1 11.2304 6.2643 -4.7440 20 1 12.0232 8.5509 -4.5952 21 1 13.4305 6.7282 -3.8352 22 6 7.0777 6.4028 -0.7650 23 6 6.4649 7.0639 0.4426 24 6 6.5989 8.3581 0.7838 25 6 5.8620 8.5460 1.9756 26 6 5.3286 7.3535 2.2961 27 8 5.6971 6.4595 1.3640 28 7 6.0536 4.1070 0.0008 29 1 5.7406 5.0251 0.0044 30 6 5.2541 2.9880 0.0002 31 6 3.8753 2.8050 0.0054 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.7754 -0.5786 0.0005 38 1 6.1975 -0.2904 -0.0086 39 1 8.3299 1.7483 -0.0126 40 1 9.2850 7.7839 -0.3337 41 1 10.3185 6.4462 0.2238 42 1 12.6385 8.6721 -1.5712 43 1 7.1732 7.1322 -1.5693 44 1 6.4399 5.5819 -1.0927 45 1 7.1597 9.1101 0.2486 46 1 5.7516 9.4691 2.5254 47 1 4.7093 7.1494 3.1571 48 1 3.2153 3.6598 0.0095 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058201427.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:46 Heat of formation + Delta-G solvation = 29.899653 kcal Electronic energy + Delta-G solvation = -33045.221226 eV Core-core repulsion = 28648.123006 eV Total energy + Delta-G solvation = -4397.098220 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.65765 -41.51915 -39.72787 -38.62429 -35.91824 -35.46677 -32.99570 -32.86660 -32.42135 -31.38500 -30.48796 -29.57688 -28.49871 -27.30237 -25.70957 -24.28029 -23.86096 -22.34208 -21.96378 -21.29075 -20.84241 -20.48232 -19.45856 -18.44257 -17.61089 -17.15369 -16.42880 -16.35355 -16.32327 -15.98107 -15.62461 -15.36477 -15.13842 -14.94274 -14.34959 -14.24109 -13.88798 -13.70348 -13.66330 -13.27752 -13.08870 -12.97974 -12.84807 -12.77575 -12.64101 -12.60652 -12.27218 -12.24394 -11.77540 -11.67113 -11.49952 -11.31775 -10.97723 -10.81095 -10.73021 -10.65176 -10.27444 -9.87998 -9.77219 -9.53877 -9.38098 -8.53022 -8.48827 -8.15693 -8.02534 -7.44086 -6.12568 -4.18266 0.92035 1.58006 1.69325 2.34481 2.65483 2.69568 2.95386 3.26077 3.34259 3.37546 3.43504 3.62683 3.83035 3.92855 4.38351 4.58259 4.61058 4.65013 4.76130 4.78883 4.86161 4.95353 4.97730 5.07729 5.10297 5.22332 5.24884 5.29376 5.40989 5.42910 5.45287 5.58738 5.66647 5.68250 5.84005 5.89559 5.96369 6.02270 6.12430 6.23818 6.41618 6.43960 6.55354 6.73305 6.85742 7.02007 7.08830 7.27113 7.32532 7.35574 7.54742 7.83064 8.07745 8.11572 8.68852 8.88328 9.47346 10.95549 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.010800 B = 0.002663 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.063812 B =10513.254938 C =12134.416016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.317 6.317 4 C 0.150 3.850 5 C -0.228 4.228 6 C -0.022 4.022 7 C -0.145 4.145 8 C -0.114 4.114 9 C 0.026 3.974 10 C 0.576 3.424 11 O -0.512 6.512 12 N -0.587 5.587 13 C 0.246 3.754 14 C -0.532 4.532 15 H 0.061 0.939 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.168 3.832 23 C -0.052 4.052 24 C -0.174 4.174 25 C -0.211 4.211 26 C -0.038 4.038 27 O -0.188 6.188 28 N -0.575 5.575 29 H 0.424 0.576 30 C 0.141 3.859 31 C -0.173 4.173 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.154 0.846 40 H 0.037 0.963 41 H 0.049 0.951 42 H 0.264 0.736 43 H 0.125 0.875 44 H 0.092 0.908 45 H 0.154 0.846 46 H 0.149 0.851 47 H 0.201 0.799 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.070 -10.366 4.424 24.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.231 6.231 4 C 0.103 3.897 5 C -0.248 4.248 6 C -0.041 4.041 7 C -0.149 4.149 8 C -0.140 4.140 9 C -0.083 4.083 10 C 0.362 3.638 11 O -0.387 6.387 12 N -0.318 5.318 13 C 0.128 3.872 14 C -0.571 4.571 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.727 3.273 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.208 1.208 22 C 0.043 3.957 23 C -0.103 4.103 24 C -0.194 4.194 25 C -0.231 4.231 26 C -0.105 4.105 27 O -0.085 6.085 28 N -0.190 5.190 29 H 0.273 0.727 30 C 0.030 3.970 31 C -0.195 4.195 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.172 0.828 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.143 0.857 44 H 0.110 0.890 45 H 0.172 0.828 46 H 0.167 0.833 47 H 0.218 0.782 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.495 -10.396 4.633 24.322 hybrid contribution 0.371 0.606 -0.714 1.007 sum -21.123 -9.790 3.919 23.609 Atomic orbital electron populations 1.21778 0.92926 1.02747 1.03506 1.22759 0.95639 0.82092 1.01467 1.86011 1.19128 1.29144 1.88826 1.18375 0.81933 0.93020 0.96344 1.20698 0.94030 0.97713 1.12343 1.20184 0.94025 0.95307 0.94540 1.18157 0.93075 0.92807 1.10887 1.20804 0.96380 0.91864 1.04924 1.20577 0.83077 0.94850 1.09756 1.17195 0.86564 0.81519 0.78501 1.90830 1.26140 1.74780 1.46980 1.48277 1.07984 1.11300 1.64206 1.19434 0.81177 0.88377 0.98251 1.21443 1.12115 1.26016 0.97504 0.92102 1.24936 0.96369 0.94990 0.97665 1.69947 1.21637 1.27310 1.34078 0.86414 0.79255 0.77785 0.83829 1.19683 1.20935 1.20791 1.20401 0.84790 1.00042 0.90486 1.23263 0.98901 0.93391 0.94729 1.21722 1.02959 0.96422 0.98313 1.21868 1.02837 0.99156 0.99200 1.23988 1.03904 0.87836 0.94785 1.83849 1.54234 1.39508 1.30870 1.43377 1.04522 1.08176 1.62931 0.72681 1.17919 0.91401 0.86812 1.00905 1.18876 0.91190 0.95498 1.13902 0.91565 0.91545 0.90458 0.91988 0.92017 0.85554 0.85436 0.82826 0.94478 0.93255 0.92640 0.85685 0.89016 0.82797 0.83340 0.78238 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.06 0.41 5.45 37.16 0.20 0.61 16 3 O -0.32 -3.48 10.12 -19.21 -0.19 -3.67 16 4 C 0.15 1.82 6.68 -39.13 -0.26 1.56 16 5 C -0.23 -2.49 8.95 -39.82 -0.36 -2.85 16 6 C -0.02 -0.26 10.05 -39.55 -0.40 -0.66 16 7 C -0.14 -2.15 6.16 -106.90 -0.66 -2.81 16 8 C -0.11 -1.89 10.59 -39.16 -0.41 -2.30 16 9 C 0.03 0.48 6.47 -82.26 -0.53 -0.05 16 10 C 0.58 12.60 7.61 -12.75 -0.10 12.50 16 11 O -0.51 -13.06 16.47 5.22 0.09 -12.97 16 12 N -0.59 -12.42 2.44 -177.88 -0.43 -12.85 16 13 C 0.25 6.23 5.21 -5.19 -0.03 6.20 16 14 C -0.53 -14.53 9.39 -34.44 -0.32 -14.86 16 15 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 16 C 0.06 1.75 5.46 -17.81 -0.10 1.65 16 17 N -0.89 -25.73 13.29 55.43 0.74 -25.00 16 18 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 22 C 0.17 2.78 5.49 -5.19 -0.03 2.75 16 23 C -0.05 -0.81 6.48 -35.63 -0.23 -1.04 16 24 C -0.17 -2.60 10.81 -39.71 -0.43 -3.03 16 25 C -0.21 -2.68 10.91 -39.71 -0.43 -3.12 16 26 C -0.04 -0.45 12.09 29.41 0.36 -0.10 16 27 O -0.19 -2.73 8.60 5.70 0.05 -2.68 16 28 N -0.58 -9.03 4.78 -7.35 -0.04 -9.07 16 29 H 0.42 6.23 2.99 -40.82 -0.12 6.10 16 30 C 0.14 2.10 7.25 -83.98 -0.61 1.50 16 31 C -0.17 -2.29 10.00 -39.27 -0.39 -2.68 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.40 7.64 -51.93 -0.40 0.00 16 36 H 0.06 0.39 7.64 -51.93 -0.40 0.00 16 37 H 0.13 1.03 6.24 -52.49 -0.33 0.70 16 38 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.15 2.40 8.06 -52.49 -0.42 1.98 16 40 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 41 H 0.05 1.43 7.36 -51.93 -0.38 1.04 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 43 H 0.13 1.94 8.10 -51.93 -0.42 1.52 16 44 H 0.09 1.38 4.46 -51.93 -0.23 1.15 16 45 H 0.15 2.26 8.06 -52.49 -0.42 1.83 16 46 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 47 H 0.20 1.61 8.06 -52.48 -0.42 1.19 16 48 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 403.28 15.07 6.08 6.08 Total: -1.00 -33.47 403.28 -9.13 -42.60 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.05 Total: 8.42 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -4.35 Total: -7.18 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.27 Total: -46.92 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.06 Total: -19.32 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.47 -9.13 -42.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058201427.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.504 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds