Wall clock time and date at job start Tue Mar 31 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99939 * 2 1 4 4 H 1.48508 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47446 * 300.00013 * 3 2 1 6 6 H 1.48502 * 109.47088 * 60.00311 * 3 2 1 7 7 C 1.37878 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00227 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99312 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46545 * 180.02562 * 9 7 2 11 11 C 1.46501 * 119.99716 * 274.92202 * 10 9 7 12 12 C 1.50691 * 109.47307 * 263.60316 * 11 10 9 13 13 C 1.34521 * 125.79000 * 90.00207 * 12 11 10 14 14 C 1.41385 * 106.83988 * 180.02562 * 13 12 11 15 15 C 1.34517 * 106.84226 * 359.97438 * 14 13 12 16 16 O 1.34307 * 125.79011 * 269.69371 * 12 11 10 17 17 C 1.34774 * 120.00138 * 94.92859 * 10 9 7 18 18 O 1.21623 * 120.00014 * 4.44134 * 17 10 9 19 19 C 1.47309 * 119.99706 * 184.44153 * 17 10 9 20 20 C 1.35207 * 122.42788 * 173.94756 * 19 17 10 21 21 S 1.71016 * 109.10483 * 179.70556 * 20 19 17 22 22 C 1.75999 * 90.57331 * 0.33876 * 21 20 19 23 23 C 1.47916 * 125.31614 * 179.91457 * 22 21 20 24 24 C 1.39527 * 120.14163 * 359.69768 * 23 22 21 25 25 C 1.37973 * 119.85721 * 180.02562 * 24 23 22 26 26 C 1.38345 * 120.13988 * 0.02562 * 25 24 23 27 27 C 1.38340 * 120.28661 * 0.26480 * 26 25 24 28 28 C 1.37974 * 120.13693 * 359.45726 * 27 26 25 29 29 N 1.29839 * 109.36292 * 359.65362 * 22 21 20 30 30 H 0.97007 * 119.99988 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.47008 * 60.00107 * 9 7 2 32 32 H 1.09005 * 109.46861 * 299.99596 * 9 7 2 33 33 H 1.09003 * 109.47265 * 23.60353 * 11 10 9 34 34 H 1.08997 * 109.47058 * 143.60120 * 11 10 9 35 35 H 1.07995 * 126.57888 * 0.03167 * 13 12 11 36 36 H 1.08000 * 126.57680 * 179.97438 * 14 13 12 37 37 H 1.07999 * 125.78712 * 180.02562 * 15 14 13 38 38 H 1.08005 * 125.45056 * 359.94006 * 20 19 17 39 39 H 1.07999 * 120.06770 * 359.97438 * 24 23 22 40 40 H 1.07998 * 119.92635 * 180.02562 * 25 24 23 41 41 H 1.08003 * 119.85404 * 180.02562 * 26 25 24 42 42 H 1.07995 * 119.93248 * 179.72199 * 27 26 25 43 43 H 1.08003 * 120.07544 * 180.27320 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 2.2031 -3.6127 -0.0015 11 6 2.7628 -4.0980 -1.2653 12 6 1.9695 -5.2872 -1.7422 13 6 0.8888 -5.2425 -2.5420 14 6 0.4650 -6.5777 -2.7330 15 6 1.3123 -7.3586 -2.0389 16 8 2.2250 -6.5719 -1.4456 17 6 2.5639 -4.1905 1.1614 18 8 2.0392 -3.8424 2.2020 19 6 3.5937 -5.2438 1.1720 20 6 4.0787 -5.7721 2.3182 21 16 5.2437 -6.9643 1.9361 22 6 5.0104 -6.6665 0.2172 23 6 5.7222 -7.3641 -0.8758 24 6 6.6713 -8.3434 -0.5809 25 6 7.3321 -8.9900 -1.6050 26 6 7.0558 -8.6689 -2.9219 27 6 6.1202 -7.6946 -3.2209 28 6 5.4484 -7.0447 -2.2061 29 7 4.1119 -5.7428 0.0584 30 1 -0.4850 0.8401 -0.0004 31 1 0.6247 -2.5562 -0.8919 32 1 0.6240 -2.5574 0.8881 33 1 2.7142 -3.3057 -2.0123 34 1 3.8015 -4.3913 -1.1138 35 1 0.4326 -4.3566 -2.9585 36 1 -0.3774 -6.9074 -3.3229 37 1 1.2690 -8.4358 -1.9738 38 1 3.7758 -5.4893 3.3156 39 1 6.8887 -8.5941 0.4469 40 1 8.0667 -9.7485 -1.3780 41 1 7.5755 -9.1782 -3.7200 42 1 5.9122 -7.4453 -4.2509 43 1 4.7150 -6.2874 -2.4408 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058214965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:54 Heat of formation + Delta-G solvation = 76.424215 kcal Electronic energy + Delta-G solvation = -30748.815885 eV Core-core repulsion = 26660.654898 eV Total energy + Delta-G solvation = -4088.160987 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 368.098 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.12067 -40.34121 -39.21686 -37.89232 -35.25958 -32.79958 -32.50582 -32.43255 -31.20943 -30.02247 -29.40004 -27.79936 -25.66771 -25.32957 -23.81209 -22.86500 -22.03781 -21.28258 -20.54918 -20.06338 -18.98667 -18.01635 -17.18024 -17.10386 -16.31898 -16.19767 -15.79843 -15.33351 -15.13930 -15.05570 -15.00861 -14.45191 -14.22815 -13.95272 -13.67333 -13.59117 -13.17898 -12.93859 -12.81341 -12.51641 -12.40388 -12.33492 -12.16253 -11.90182 -11.67567 -11.49362 -11.28559 -11.20594 -10.90669 -10.63279 -10.22010 -10.04566 -9.77205 -9.53681 -9.50963 -9.36869 -9.19035 -9.11737 -8.46057 -8.30006 -8.13089 -7.75096 -6.06479 -4.12067 0.15972 1.16762 1.17206 1.27104 1.58357 2.09640 2.39549 2.96790 3.29052 3.36642 3.37707 3.40677 3.61801 3.74131 3.93707 4.12461 4.43581 4.65100 4.69817 4.83222 4.91908 5.12147 5.18489 5.24099 5.28626 5.31896 5.37555 5.39922 5.44378 5.61497 5.73623 5.79764 5.87876 6.16832 6.17440 6.25973 6.27431 6.29965 6.40043 6.51370 6.68712 6.88284 7.03306 7.38364 7.44057 7.54452 7.63238 7.89501 8.18813 8.28889 8.80717 8.97710 9.53230 11.01548 Molecular weight = 368.10amu Principal moments of inertia in cm(-1) A = 0.010379 B = 0.003360 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.039550 B = 8331.787524 C = 9078.045975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.243 3.757 10 N -0.572 5.572 11 C 0.177 3.823 12 C -0.001 4.001 13 C -0.209 4.209 14 C -0.214 4.214 15 C -0.061 4.061 16 O -0.154 6.154 17 C 0.581 3.419 18 O -0.532 6.532 19 C 0.028 3.972 20 C -0.216 4.216 21 S 0.151 5.849 22 C 0.088 3.912 23 C -0.016 4.016 24 C -0.102 4.102 25 C -0.120 4.120 26 C -0.109 4.109 27 C -0.120 4.120 28 C -0.067 4.067 29 N -0.411 5.411 30 H 0.263 0.737 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.191 0.809 38 H 0.189 0.811 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.406 -20.922 -5.524 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.569 4.569 8 H 0.078 0.922 9 C 0.125 3.875 10 N -0.301 5.301 11 C 0.052 3.948 12 C -0.053 4.053 13 C -0.229 4.229 14 C -0.233 4.233 15 C -0.130 4.130 16 O -0.048 6.048 17 C 0.364 3.636 18 O -0.410 6.410 19 C -0.108 4.108 20 C -0.357 4.357 21 S 0.409 5.591 22 C -0.187 4.187 23 C -0.020 4.020 24 C -0.123 4.123 25 C -0.138 4.138 26 C -0.128 4.128 27 C -0.138 4.138 28 C -0.088 4.088 29 N -0.125 5.125 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.163 0.837 36 H 0.158 0.842 37 H 0.207 0.793 38 H 0.206 0.794 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.618 -21.122 -4.625 25.553 hybrid contribution -0.730 1.581 -0.126 1.746 sum 12.888 -19.540 -4.751 23.885 Atomic orbital electron populations 1.69951 1.05998 1.26978 1.50103 1.24931 0.94868 0.99209 0.94949 0.86440 0.80027 0.83313 0.77633 1.19729 1.20896 1.20871 1.21463 0.93478 0.90436 1.51536 0.92169 1.19438 0.87414 0.81612 0.99047 1.48099 1.44594 1.33543 1.03907 1.20417 0.97965 0.89194 0.87195 1.23098 0.98937 0.83671 0.99618 1.21685 0.98732 0.98022 1.04471 1.21739 1.02781 0.93416 1.05411 1.23890 0.92304 0.96644 1.00116 1.84171 1.45884 1.16523 1.58228 1.17144 0.81356 0.80447 0.84611 1.90781 1.54859 1.63600 1.31730 1.20569 1.01710 1.01430 0.87046 1.26487 1.02490 1.01833 1.04916 1.83542 1.36675 1.34875 1.03984 1.26042 0.99333 0.98697 0.94660 1.17780 0.96760 0.96738 0.90718 1.21129 0.95804 0.95697 0.99627 1.20988 1.00114 1.00204 0.92532 1.21294 0.97590 0.97303 0.96586 1.21169 0.96628 0.96584 0.99466 1.21344 0.98044 0.98615 0.90796 1.67281 1.07992 1.08571 1.28681 0.92700 0.94651 0.93292 0.87634 0.86277 0.83665 0.84243 0.79263 0.79362 0.85892 0.85559 0.85825 0.85444 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.53 -14.92 9.38 -34.44 -0.32 -15.24 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.24 6.45 5.22 -5.19 -0.03 6.43 16 10 N -0.57 -12.87 2.46 -177.74 -0.44 -13.31 16 11 C 0.18 3.25 5.55 -5.20 -0.03 3.22 16 12 C 0.00 -0.02 6.55 -35.63 -0.23 -0.25 16 13 C -0.21 -3.49 10.81 -39.70 -0.43 -3.92 16 14 C -0.21 -3.08 10.91 -39.70 -0.43 -3.52 16 15 C -0.06 -0.84 12.09 29.42 0.36 -0.48 16 16 O -0.15 -2.46 8.60 5.69 0.05 -2.41 16 17 C 0.58 13.10 7.58 -12.57 -0.10 13.01 16 18 O -0.53 -13.76 16.15 5.26 0.08 -13.67 16 19 C 0.03 0.51 6.46 -84.94 -0.55 -0.04 16 20 C -0.22 -3.25 10.57 29.65 0.31 -2.94 16 21 S 0.15 1.69 22.13 -107.50 -2.38 -0.68 16 22 C 0.09 1.16 7.32 -14.43 -0.11 1.06 16 23 C -0.02 -0.18 5.87 -104.97 -0.62 -0.80 16 24 C -0.10 -0.91 9.60 -39.20 -0.38 -1.29 16 25 C -0.12 -0.90 10.03 -39.64 -0.40 -1.29 16 26 C -0.11 -0.81 10.04 -39.50 -0.40 -1.21 16 27 C -0.12 -1.05 10.03 -39.64 -0.40 -1.45 16 28 C -0.07 -0.73 9.68 -39.20 -0.38 -1.11 16 29 N -0.41 -6.51 3.97 -8.10 -0.03 -6.54 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 32 H 0.05 1.47 7.23 -51.93 -0.38 1.09 16 33 H 0.11 1.90 8.02 -51.93 -0.42 1.48 16 34 H 0.12 2.07 5.15 -51.95 -0.27 1.80 16 35 H 0.15 2.40 8.06 -52.49 -0.42 1.98 16 36 H 0.14 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.19 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.19 2.69 8.00 -52.48 -0.42 2.27 16 39 H 0.12 0.90 7.29 -52.49 -0.38 0.52 16 40 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 42 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.14 1.66 7.72 -52.48 -0.40 1.25 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -33.72 386.59 -10.16 -43.88 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.77 Total: 4.03 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -4.22 Total: -8.15 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.27 Total: -45.48 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.13 Total: -16.09 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.38 Total: -0.68 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.72 -10.16 -43.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058214965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.301 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds