Wall clock time and date at job start Tue Mar 31 2020 06:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47639 * 2 1 4 4 N 1.46492 * 109.47524 * 179.97438 * 3 2 1 5 5 C 1.46507 * 120.00028 * 269.99980 * 4 3 2 6 6 C 1.34777 * 120.00309 * 89.99571 * 4 3 2 7 7 O 1.21589 * 119.99836 * 0.02562 * 6 4 3 8 8 N 1.34780 * 120.00118 * 180.02562 * 6 4 3 9 9 C 1.39945 * 119.99708 * 174.27995 * 8 6 4 10 10 C 1.38885 * 120.07326 * 340.46372 * 9 8 6 11 11 C 1.38097 * 119.93060 * 180.29791 * 10 9 8 12 12 C 1.38298 * 120.06867 * 359.68199 * 11 10 9 13 13 C 1.38257 * 120.14182 * 0.02562 * 12 11 10 14 14 C 1.38142 * 120.06776 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.03052 * 179.97438 * 14 13 12 16 16 O 1.42894 * 109.47297 * 359.97438 * 15 14 13 17 17 C 1.35675 * 116.99644 * 179.97438 * 16 15 14 18 18 C 1.39320 * 119.81862 * 179.97438 * 17 16 15 19 19 C 1.36432 * 120.18702 * 180.25534 * 18 17 16 20 20 C 1.40834 * 119.81255 * 359.46296 * 19 18 17 21 21 C 1.41217 * 120.18278 * 180.25221 * 20 19 18 22 22 H 1.07997 * 120.00053 * 209.07046 * 21 20 19 23 23 C 1.39887 * 119.99877 * 29.06257 * 21 20 19 24 24 N 1.30881 * 120.00168 * 11.51763 * 23 21 20 25 25 Si 1.86796 * 120.00024 * 191.51662 * 23 21 20 26 26 H 1.48497 * 109.47163 * 60.00283 * 25 23 21 27 27 H 1.48503 * 109.47196 * 180.02562 * 25 23 21 28 28 H 1.48508 * 109.47235 * 300.00049 * 25 23 21 29 29 C 1.40841 * 119.63912 * 0.53743 * 20 19 18 30 30 C 1.36435 * 119.81304 * 359.73313 * 29 20 19 31 31 H 1.08997 * 109.47299 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47284 * 300.00379 * 1 2 3 33 33 H 1.09009 * 109.46908 * 60.00269 * 1 2 3 34 34 H 1.08998 * 109.47284 * 239.99621 * 2 1 3 35 35 H 1.09007 * 109.46483 * 120.00027 * 2 1 3 36 36 H 1.08998 * 109.47092 * 59.99504 * 3 2 1 37 37 H 1.09002 * 109.46846 * 300.00237 * 3 2 1 38 38 H 1.08995 * 109.47212 * 270.00169 * 5 4 3 39 39 H 1.09003 * 109.46986 * 29.99803 * 5 4 3 40 40 H 1.09001 * 109.47019 * 149.99242 * 5 4 3 41 41 H 0.96998 * 119.99851 * 354.27764 * 8 6 4 42 42 H 1.08007 * 120.03457 * 359.97353 * 10 9 8 43 43 H 1.08003 * 119.96374 * 179.69608 * 11 10 9 44 44 H 1.07998 * 119.92926 * 180.02562 * 12 11 10 45 45 H 1.08002 * 119.96960 * 179.97438 * 13 12 11 46 46 H 1.09003 * 109.46772 * 239.99800 * 15 14 13 47 47 H 1.09005 * 109.46577 * 120.00493 * 15 14 13 48 48 H 1.08000 * 119.90142 * 359.97438 * 18 17 16 49 49 H 1.07997 * 120.09588 * 179.70294 * 19 18 17 50 50 H 0.96996 * 120.00203 * 179.97438 * 24 23 21 51 51 H 1.08000 * 120.09136 * 179.71070 * 29 20 19 52 52 H 1.07998 * 119.91158 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2370 1.4425 1.2697 6 6 4.1794 1.4421 -1.1663 7 8 3.5720 1.4423 -2.2195 8 7 5.5272 1.4415 -1.1656 9 6 6.2274 1.3205 -2.3713 10 6 5.5947 0.8043 -3.4947 11 6 6.2902 0.6804 -4.6813 12 6 7.6135 1.0758 -4.7534 13 6 8.2445 1.5956 -3.6385 14 6 7.5545 1.7211 -2.4483 15 6 8.2433 2.2874 -1.2333 16 8 9.5943 2.6170 -1.5620 17 6 10.3583 3.1427 -0.5717 18 6 11.6844 3.4850 -0.8274 19 6 12.4610 4.0093 0.1643 20 6 11.9153 4.2149 1.4462 21 6 12.7105 4.7621 2.4770 22 1 12.5099 4.5070 3.5070 23 6 13.7583 5.6345 2.1637 24 7 13.8649 6.1213 0.9535 25 14 15.0052 6.1046 3.4727 26 1 15.6908 4.8827 3.9648 27 1 16.0065 7.0344 2.8913 28 1 14.3093 6.7709 4.6028 29 6 10.5739 3.8661 1.6963 30 6 9.8124 3.3377 0.6952 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 1.8932 -0.5139 0.8901 36 1 1.6767 1.9563 0.8899 37 1 1.6767 1.9562 -0.8900 38 1 4.4185 2.4702 1.5843 39 1 3.6476 0.9289 2.0292 40 1 5.1894 0.9285 1.1399 41 1 6.0119 1.5251 -0.3296 42 1 4.5613 0.4952 -3.4390 43 1 5.8001 0.2745 -5.5540 44 1 8.1551 0.9782 -5.6826 45 1 9.2781 1.9031 -3.6978 46 1 8.2345 1.5475 -0.4329 47 1 7.7196 3.1849 -0.9041 48 1 12.1000 3.3305 -1.8121 49 1 13.4901 4.2697 -0.0343 50 1 14.5911 6.7265 0.7364 51 1 10.1493 4.0163 2.6780 52 1 8.7837 3.0693 0.8853 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058428421.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:04 Heat of formation + Delta-G solvation = -26.572072 kcal Electronic energy + Delta-G solvation = -32212.525861 eV Core-core repulsion = 27948.811938 eV Total energy + Delta-G solvation = -4263.713923 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 368.189 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.08921 -40.71520 -39.80521 -38.12519 -37.25202 -36.12082 -35.20019 -34.11410 -32.97004 -31.56821 -30.81303 -30.62811 -28.37907 -27.73422 -26.71010 -26.50474 -24.03976 -23.29917 -22.68737 -22.33632 -21.89039 -20.98376 -19.58103 -19.19043 -18.65245 -18.35004 -17.40309 -17.03037 -16.97490 -16.67384 -16.57645 -16.01438 -15.80189 -15.69292 -15.43150 -14.96629 -14.85977 -14.80381 -14.59805 -14.35041 -14.04445 -14.00126 -13.86964 -13.80082 -13.47824 -13.38440 -13.09370 -12.93165 -12.79064 -12.75913 -12.66268 -12.45470 -12.39893 -12.24489 -12.10350 -11.75417 -11.68081 -11.63194 -11.59367 -11.17441 -10.96247 -10.92604 -9.83209 -9.72375 -9.53911 -8.97547 -8.85506 -8.54146 -6.23951 0.28019 0.44843 0.96447 1.04409 1.40923 1.41175 1.51776 1.54086 1.91906 2.24475 2.44683 2.72249 2.77481 2.85451 3.69884 3.71538 3.93481 4.03141 4.05925 4.07416 4.13716 4.23504 4.30134 4.32313 4.38318 4.39973 4.42692 4.53836 4.55693 4.58979 4.63983 4.71961 4.83692 4.86907 4.92361 5.07607 5.08691 5.11462 5.17628 5.21729 5.27797 5.29411 5.32824 5.39175 5.50792 5.53363 5.64344 5.65107 5.68168 5.77737 5.89019 6.08037 6.08562 6.28194 6.57537 6.66325 6.80584 6.98062 7.09613 7.28340 8.42619 Molecular weight = 368.19amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.001936 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.524065 B =14458.135755 C =16636.455538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.128 3.872 4 N -0.624 5.624 5 C 0.064 3.936 6 C 0.698 3.302 7 O -0.602 6.602 8 N -0.675 5.675 9 C 0.168 3.832 10 C -0.154 4.154 11 C -0.098 4.098 12 C -0.142 4.142 13 C -0.088 4.088 14 C -0.133 4.133 15 C 0.110 3.890 16 O -0.325 6.325 17 C 0.006 3.994 18 C -0.134 4.134 19 C -0.145 4.145 20 C 0.052 3.948 21 C -0.499 4.499 22 H 0.076 0.924 23 C 0.030 3.970 24 N -0.840 5.840 25 Si 0.982 3.018 26 H -0.261 1.261 27 H -0.272 1.272 28 H -0.261 1.261 29 C -0.199 4.199 30 C -0.167 4.167 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.416 0.584 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.128 0.872 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.109 0.891 49 H 0.109 0.891 50 H 0.285 0.715 51 H 0.109 0.891 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.950 -11.129 -1.402 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C 0.006 3.994 4 N -0.360 5.360 5 C -0.078 4.078 6 C 0.400 3.600 7 O -0.482 6.482 8 N -0.323 5.323 9 C 0.071 3.929 10 C -0.174 4.174 11 C -0.116 4.116 12 C -0.161 4.161 13 C -0.107 4.107 14 C -0.136 4.136 15 C 0.035 3.965 16 O -0.240 6.240 17 C -0.038 4.038 18 C -0.153 4.153 19 C -0.164 4.164 20 C 0.050 3.950 21 C -0.529 4.529 22 H 0.094 0.906 23 C -0.183 4.183 24 N -0.468 5.468 25 Si 0.804 3.196 26 H -0.185 1.185 27 H -0.196 1.196 28 H -0.185 1.185 29 C -0.219 4.219 30 C -0.185 4.185 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.255 0.745 42 H 0.165 0.835 43 H 0.166 0.834 44 H 0.164 0.836 45 H 0.146 0.854 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.127 0.873 49 H 0.127 0.873 50 H 0.095 0.905 51 H 0.127 0.873 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -21.270 -11.003 -2.361 24.063 hybrid contribution 0.998 0.563 0.944 1.485 sum -20.273 -10.439 -1.417 22.846 Atomic orbital electron populations 1.21666 0.93873 1.02401 1.02432 1.21837 0.97165 0.96538 1.01767 1.21599 0.76377 0.97620 1.03812 1.47233 1.07600 1.76494 1.04645 1.22096 0.97543 1.03430 0.84757 1.16053 0.81268 0.77880 0.84757 1.90807 1.68172 1.58349 1.30830 1.42701 1.05232 1.75329 1.09018 1.17307 0.89980 0.98818 0.86751 1.21659 1.01994 1.01403 0.92340 1.21377 0.94168 0.98309 0.97780 1.21400 0.95296 1.00371 0.98999 1.20958 1.00326 0.97583 0.91798 1.19339 0.93100 1.04760 0.96399 1.21171 0.81243 0.98988 0.95098 1.85796 1.22777 1.79067 1.36395 1.18677 0.91672 1.05462 0.87981 1.20005 0.92228 1.03825 0.99241 1.20916 0.99398 1.02096 0.94038 1.17980 0.92065 0.91394 0.93537 1.19674 1.13417 1.25254 0.94570 0.90553 1.26706 0.99020 0.94173 0.98377 1.69862 1.29892 1.25016 1.22048 0.85245 0.77373 0.78758 0.78258 1.18521 1.19627 1.18483 1.20857 0.93863 1.08170 0.98982 1.20712 1.00020 1.05199 0.92611 0.92100 0.91077 0.93037 0.94063 0.90881 0.87541 0.91527 0.91091 0.87847 0.90969 0.74495 0.83514 0.83397 0.83614 0.85406 0.90623 0.91590 0.87285 0.87350 0.90461 0.87305 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 71.98 0.71 -0.70 16 2 C -0.13 -1.70 6.26 30.59 0.19 -1.51 16 3 C 0.13 1.76 5.41 86.38 0.47 2.22 16 4 N -0.62 -10.20 2.87 -864.92 -2.49 -12.69 16 5 C 0.06 0.61 10.15 127.77 1.30 1.90 16 6 C 0.70 16.57 8.13 179.05 1.45 18.03 16 7 O -0.60 -18.15 12.82 -4.00 -0.05 -18.20 16 8 N -0.68 -15.19 5.06 -317.18 -1.61 -16.80 16 9 C 0.17 4.50 6.48 38.14 0.25 4.74 16 10 C -0.15 -4.11 8.78 22.39 0.20 -3.91 16 11 C -0.10 -2.24 10.04 22.25 0.22 -2.02 16 12 C -0.14 -3.32 10.04 22.29 0.22 -3.10 16 13 C -0.09 -2.48 9.37 22.25 0.21 -2.27 16 14 C -0.13 -3.78 5.90 -19.74 -0.12 -3.90 16 15 C 0.11 3.26 4.02 71.24 0.29 3.55 16 16 O -0.32 -12.28 8.60 -89.92 -0.77 -13.06 16 17 C 0.01 0.25 6.71 22.79 0.15 0.41 16 18 C -0.13 -6.39 9.92 22.11 0.22 -6.17 16 19 C -0.14 -7.63 8.60 22.48 0.19 -7.44 16 20 C 0.05 2.78 5.54 -21.28 -0.12 2.66 16 21 C -0.50 -26.53 9.05 23.40 0.21 -26.32 16 22 H 0.08 3.87 7.87 -2.91 -0.02 3.84 16 23 C 0.03 1.50 5.23 85.23 0.45 1.95 16 24 N -0.84 -44.40 10.90 21.82 0.24 -44.16 16 25 Si 0.98 38.26 29.57 68.60 2.03 40.29 16 26 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 27 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 28 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 29 C -0.20 -9.31 9.74 22.49 0.22 -9.09 16 30 C -0.17 -6.88 8.96 22.11 0.20 -6.69 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.11 0.87 8.07 -2.39 -0.02 0.85 16 37 H 0.07 1.20 7.42 -2.39 -0.02 1.18 16 38 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.10 0.52 8.07 -2.39 -0.02 0.50 16 40 H 0.07 0.64 6.45 -2.39 -0.02 0.62 16 41 H 0.42 7.38 5.37 -92.71 -0.50 6.89 16 42 H 0.15 4.22 5.42 -2.91 -0.02 4.21 16 43 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 44 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 45 H 0.13 3.80 7.00 -2.91 -0.02 3.78 16 46 H 0.08 1.96 7.38 -2.39 -0.02 1.94 16 47 H 0.07 1.89 7.64 -2.38 -0.02 1.88 16 48 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 49 H 0.11 5.99 6.26 -2.91 -0.02 5.97 16 50 H 0.28 13.75 8.30 -92.71 -0.77 12.98 16 51 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 52 H 0.13 4.27 6.27 -2.91 -0.02 4.26 16 Total: -1.00 -67.63 422.03 4.71 -62.93 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: 0.44 Total: 39.33 kcal Atomic # 6 Polarization: -44.56 SS G_CDS: 6.92 Total: -37.64 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -3.85 Total: -73.65 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.82 Total: -31.26 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -67.63 4.71 -62.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058428421.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.354 kcal (2) G-P(sol) polarization free energy of solvation -67.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds