Wall clock time and date at job start Tue Mar 31 2020 06:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35803 * 117.00111 * 2 1 4 4 C 1.38897 * 119.89644 * 359.97438 * 3 2 1 5 5 C 1.37713 * 120.17815 * 179.76260 * 4 3 2 6 6 C 1.40035 * 119.96959 * 0.54306 * 5 4 3 7 7 C 1.46866 * 120.10410 * 179.74414 * 6 5 4 8 8 C 1.35280 * 119.99873 * 359.71857 * 7 6 5 9 9 C 1.41740 * 120.00361 * 180.02562 * 8 7 6 10 10 O 1.21762 * 119.99436 * 359.97438 * 9 8 7 11 11 C 1.47938 * 120.00294 * 180.02562 * 9 8 7 12 12 C 1.39632 * 120.11651 * 0.26925 * 11 9 8 13 13 C 1.37949 * 119.96327 * 180.27746 * 12 11 9 14 14 C 1.38305 * 120.20522 * 359.42486 * 13 12 11 15 15 C 1.38836 * 120.23952 * 0.30203 * 14 13 12 16 16 O 1.35914 * 119.98523 * 179.97438 * 15 14 13 17 17 C 1.38477 * 120.03256 * 359.97438 * 15 14 13 18 18 C 1.40042 * 119.79900 * 359.46261 * 6 5 4 19 19 C 1.38060 * 119.82047 * 0.25376 * 18 6 5 20 20 O 1.35995 * 119.98799 * 180.02562 * 19 18 6 21 21 C 1.42900 * 116.99851 * 359.97438 * 20 19 18 22 22 C 1.53004 * 109.47177 * 180.02562 * 21 20 19 23 23 C 1.50695 * 109.46920 * 180.02562 * 22 21 20 24 24 H 1.08002 * 120.00698 * 0.02562 * 23 22 21 25 25 C 1.37880 * 119.99921 * 179.97438 * 23 22 21 26 26 N 1.31519 * 119.99871 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47154 * 89.99586 * 27 25 23 29 29 H 1.48498 * 109.47261 * 210.00245 * 27 25 23 30 30 H 1.48504 * 109.46655 * 329.99900 * 27 25 23 31 31 H 1.08998 * 109.47148 * 299.99851 * 1 2 3 32 32 H 1.08995 * 109.47410 * 60.00132 * 1 2 3 33 33 H 1.08999 * 109.47016 * 180.02562 * 1 2 3 34 34 H 1.07999 * 119.91038 * 0.02562 * 4 3 2 35 35 H 1.07998 * 120.01585 * 180.28015 * 5 4 3 36 36 H 1.08001 * 120.00175 * 179.72308 * 7 6 5 37 37 H 1.08001 * 119.99947 * 359.97438 * 8 7 6 38 38 H 1.08007 * 120.02172 * 359.97438 * 12 11 9 39 39 H 1.08002 * 119.90106 * 179.70937 * 13 12 11 40 40 H 1.08006 * 119.88133 * 180.27739 * 14 13 12 41 41 H 0.96700 * 113.99559 * 89.99637 * 16 15 14 42 42 H 1.07996 * 120.10329 * 179.97438 * 17 15 14 43 43 H 1.07996 * 120.09299 * 180.27808 * 18 6 5 44 44 H 1.09003 * 109.47501 * 300.00502 * 21 20 19 45 45 H 1.09004 * 109.46973 * 60.00458 * 21 20 19 46 46 H 1.08998 * 109.46654 * 300.00299 * 22 21 20 47 47 H 1.08996 * 109.47174 * 59.99927 * 22 21 20 48 48 H 0.97001 * 120.00080 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2870 2.3735 -0.0005 5 6 1.9062 3.6036 0.0044 6 6 3.3042 3.6831 -0.0015 7 6 3.9676 4.9934 -0.0020 8 6 3.2279 6.1260 -0.0024 9 6 3.8680 7.3906 -0.0034 10 8 5.0838 7.4574 -0.0034 11 6 3.0591 8.6292 -0.0033 12 6 1.6647 8.5553 0.0035 13 6 0.9134 9.7123 -0.0023 14 6 1.5369 10.9468 -0.0026 15 6 2.9228 11.0302 -0.0036 16 8 3.5301 12.2461 -0.0045 17 6 3.6866 9.8751 -0.0037 18 6 4.0680 2.5092 -0.0011 19 6 3.4385 1.2805 -0.0001 20 8 4.1769 0.1385 0.0009 21 6 5.5983 0.2850 0.0003 22 6 6.2536 -1.0976 0.0009 23 6 7.7526 -0.9430 0.0009 24 1 8.1939 0.0427 0.0009 25 6 8.5608 -2.0601 0.0019 26 7 8.0235 -3.2605 0.0024 27 14 10.4190 -1.8686 0.0026 28 1 10.9108 -1.8169 1.4029 29 1 11.0360 -3.0244 -0.6965 30 1 10.7873 -0.6122 -0.6981 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 0.2087 2.3134 -0.0005 35 1 1.3138 4.5066 0.0085 36 1 5.0460 5.0527 -0.0020 37 1 2.1495 6.0666 -0.0028 38 1 1.1746 7.5929 0.0082 39 1 -0.1650 9.6539 -0.0018 40 1 0.9436 11.8493 -0.0026 41 1 3.7064 12.5983 0.8786 42 1 4.7647 9.9387 -0.0048 43 1 5.1465 2.5650 -0.0011 44 1 5.9068 0.8325 -0.8904 45 1 5.9074 0.8343 0.8897 46 1 5.9451 -1.6454 0.8913 47 1 5.9445 -1.6465 -0.8886 48 1 8.5921 -4.0464 0.0035 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064367362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:29 Heat of formation + Delta-G solvation = -86.923594 kcal Electronic energy + Delta-G solvation = -30515.920665 eV Core-core repulsion = 26081.463858 eV Total energy + Delta-G solvation = -4434.456807 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.150 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.68772 -40.41941 -39.21285 -38.32418 -37.25095 -36.93911 -33.78075 -33.27068 -31.77218 -30.76244 -30.67270 -29.94600 -29.03246 -27.33846 -25.49714 -25.03111 -23.41703 -22.84697 -22.57438 -21.19817 -20.61592 -19.52305 -18.60949 -18.35844 -17.30854 -16.94656 -16.75328 -16.22655 -16.02237 -15.99234 -15.81862 -15.43637 -15.09453 -14.90394 -14.76894 -14.65868 -14.58230 -14.36250 -14.18713 -13.94655 -13.00581 -12.97648 -12.71961 -12.62448 -12.50686 -12.32150 -12.15851 -12.00645 -11.76217 -11.73975 -11.47407 -11.21356 -11.10930 -10.91975 -10.85747 -10.59579 -10.05915 -10.02734 -9.81346 -9.67373 -9.48947 -9.29833 -9.18253 -8.59131 -8.43877 -7.58475 -6.09539 -4.14299 -0.08053 0.61806 0.79052 1.32978 1.80614 2.72227 3.21955 3.28491 3.34408 3.37130 3.37282 3.58393 3.66761 3.76705 3.92133 4.35970 4.40644 4.47311 4.54156 4.59711 4.73601 4.83743 4.90562 4.93829 5.04208 5.04784 5.13818 5.21193 5.23997 5.26882 5.32384 5.39108 5.40793 5.57219 5.71976 5.84397 5.85122 5.88172 5.92959 6.00076 6.02548 6.10712 6.20414 6.26055 6.46853 6.56229 6.67024 7.15063 7.16089 7.35550 7.51811 7.64539 7.79852 8.02236 8.23733 8.91255 9.50045 11.01861 Molecular weight = 368.15amu Principal moments of inertia in cm(-1) A = 0.008853 B = 0.001791 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3162.101565 B =15634.215168 C =18767.997232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.297 6.297 3 C 0.114 3.886 4 C -0.184 4.184 5 C -0.096 4.096 6 C -0.094 4.094 7 C 0.030 3.970 8 C -0.268 4.268 9 C 0.425 3.575 10 O -0.463 6.463 11 C -0.138 4.138 12 C -0.084 4.084 13 C -0.116 4.116 14 C -0.121 4.121 15 C 0.093 3.907 16 O -0.497 6.497 17 C -0.092 4.092 18 C -0.147 4.147 19 C 0.115 3.885 20 O -0.302 6.302 21 C 0.062 3.938 22 C 0.026 3.974 23 C -0.527 4.527 24 H 0.058 0.942 25 C 0.061 3.939 26 N -0.889 5.889 27 Si 0.898 3.102 28 H -0.279 1.279 29 H -0.285 1.285 30 H -0.273 1.273 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.392 0.608 42 H 0.140 0.860 43 H 0.145 0.855 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.818 25.070 1.669 32.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.210 6.210 3 C 0.068 3.932 4 C -0.203 4.203 5 C -0.115 4.115 6 C -0.095 4.095 7 C 0.011 3.989 8 C -0.287 4.287 9 C 0.309 3.691 10 O -0.344 6.344 11 C -0.139 4.139 12 C -0.102 4.102 13 C -0.134 4.134 14 C -0.139 4.139 15 C 0.048 3.952 16 O -0.307 6.307 17 C -0.110 4.110 18 C -0.166 4.166 19 C 0.067 3.933 20 O -0.215 6.215 21 C -0.012 4.012 22 C -0.011 4.011 23 C -0.565 4.565 24 H 0.077 0.923 25 C -0.142 4.142 26 N -0.527 5.527 27 Si 0.726 3.274 28 H -0.205 1.205 29 H -0.211 1.211 30 H -0.197 1.197 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.248 0.752 42 H 0.158 0.842 43 H 0.162 0.838 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.148 24.437 1.054 31.690 hybrid contribution 0.785 0.466 0.497 1.039 sum -19.363 24.903 1.550 31.583 Atomic orbital electron populations 1.23090 0.78773 1.04121 1.00988 1.86231 1.20819 1.25855 1.88084 1.18632 0.89491 0.85206 0.99881 1.20920 0.99839 0.91316 1.08180 1.20979 0.93268 0.97081 1.00137 1.18658 0.93017 0.92074 1.05729 1.22712 1.00482 0.90707 0.85008 1.22315 1.01511 0.93033 1.11835 1.19150 0.88233 0.88781 0.72926 1.90683 1.15836 1.89941 1.37895 1.20446 0.94423 0.94560 1.04515 1.21497 0.92628 0.99301 0.96783 1.21054 1.00404 0.91632 1.00277 1.21673 0.93959 0.98853 0.99433 1.18387 0.90415 0.84830 1.01527 1.84859 1.80422 1.31718 1.33748 1.21682 1.01416 0.90931 0.96985 1.21431 1.00936 0.90299 1.03918 1.18322 0.88571 0.87163 0.99216 1.86309 1.21269 1.26768 1.87181 1.23406 0.74615 1.03534 0.99660 1.19111 0.94229 0.88744 0.98983 1.20969 0.90288 0.92948 1.52311 0.92332 1.24988 0.99133 0.95142 0.94902 1.69980 1.35471 0.97566 1.49642 0.86492 0.84889 0.77813 0.78225 1.20499 1.21058 1.19734 0.92761 0.92749 0.88123 0.84629 0.85323 0.84577 0.84922 0.84619 0.84842 0.85009 0.75228 0.84222 0.83758 0.93017 0.93025 0.95335 0.95315 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.44 10.26 -33.80 -0.35 -4.78 16 3 C 0.11 1.69 6.71 -38.88 -0.26 1.43 16 4 C -0.18 -2.02 9.01 -39.53 -0.36 -2.38 16 5 C -0.10 -1.00 9.40 -39.10 -0.37 -1.37 16 6 C -0.09 -1.15 5.87 -105.06 -0.62 -1.77 16 7 C 0.03 0.33 9.42 -37.15 -0.35 -0.02 16 8 C -0.27 -2.59 8.73 -39.30 -0.34 -2.93 16 9 C 0.43 4.76 6.91 -34.27 -0.24 4.52 16 10 O -0.46 -6.65 16.12 5.13 0.08 -6.57 16 11 C -0.14 -1.30 5.88 -104.93 -0.62 -1.91 16 12 C -0.08 -0.57 9.43 -39.17 -0.37 -0.94 16 13 C -0.12 -0.66 10.03 -39.66 -0.40 -1.06 16 14 C -0.12 -0.78 9.98 -39.34 -0.39 -1.17 16 15 C 0.09 0.75 6.70 -39.27 -0.26 0.48 16 16 O -0.50 -3.55 13.50 -19.47 -0.26 -3.82 16 17 C -0.09 -0.87 9.53 -39.02 -0.37 -1.24 16 18 C -0.15 -2.17 8.78 -38.97 -0.34 -2.51 16 19 C 0.11 1.95 6.69 -39.19 -0.26 1.69 16 20 O -0.30 -6.25 9.91 -34.40 -0.34 -6.59 16 21 C 0.06 1.31 4.68 37.16 0.17 1.49 16 22 C 0.03 0.70 5.34 -27.88 -0.15 0.55 16 23 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 24 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 25 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 26 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 27 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 30 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 31 H 0.05 0.39 7.65 -51.93 -0.40 0.00 16 32 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.14 1.06 6.27 -52.49 -0.33 0.73 16 35 H 0.13 0.91 6.15 -52.49 -0.32 0.58 16 36 H 0.14 1.59 7.45 -52.49 -0.39 1.20 16 37 H 0.13 0.90 4.24 -52.49 -0.22 0.68 16 38 H 0.14 0.61 6.20 -52.48 -0.33 0.29 16 39 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 40 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 41 H 0.39 0.89 9.06 45.56 0.41 1.30 16 42 H 0.14 1.40 7.65 -52.49 -0.40 1.00 16 43 H 0.14 2.08 6.28 -52.49 -0.33 1.75 16 44 H 0.05 1.03 7.66 -51.93 -0.40 0.64 16 45 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 46 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 411.92 15.07 6.21 6.21 Total: -1.00 -35.38 411.92 -9.04 -44.42 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.15 Total: -0.17 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -4.94 Total: -19.31 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 0.74 Total: -25.75 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.87 Total: -21.76 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.38 -9.04 -44.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064367362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.506 kcal (2) G-P(sol) polarization free energy of solvation -35.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds