Wall clock time and date at job start Tue Mar 31 2020 06:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.47149 * 2 1 4 4 C 1.46495 * 120.00294 * 275.00296 * 3 2 1 5 5 C 1.53003 * 109.47078 * 274.99721 * 4 3 2 6 6 S 1.65598 * 119.99831 * 94.99783 * 3 2 1 7 7 O 1.42095 * 106.40434 * 336.46315 * 6 3 2 8 8 O 1.42097 * 106.40468 * 203.53912 * 6 3 2 9 9 C 1.76205 * 107.21781 * 90.00109 * 6 3 2 10 10 C 1.38378 * 119.92995 * 270.02157 * 9 6 3 11 11 C 1.38333 * 120.29553 * 179.97438 * 10 9 6 12 12 C 1.37982 * 120.14330 * 359.74990 * 11 10 9 13 13 C 1.39552 * 119.85159 * 0.48095 * 12 11 10 14 14 C 1.47845 * 120.14717 * 179.79061 * 13 12 11 15 15 O 1.21552 * 120.00284 * 140.29108 * 14 13 12 16 16 N 1.34777 * 119.99870 * 320.29497 * 14 13 12 17 17 C 1.46504 * 120.00032 * 4.34380 * 16 14 13 18 18 C 1.46498 * 120.00090 * 184.33959 * 16 14 13 19 19 H 1.08996 * 109.47092 * 0.02562 * 18 16 14 20 20 C 1.52996 * 109.47183 * 120.00417 * 18 16 14 21 21 C 1.50704 * 109.47144 * 240.00257 * 18 16 14 22 22 H 1.07995 * 120.00193 * 0.02562 * 21 18 16 23 23 C 1.37878 * 120.00046 * 179.97438 * 21 18 16 24 24 N 1.31510 * 120.00390 * 179.97438 * 23 21 18 25 25 Si 1.86808 * 119.99925 * 0.02562 * 23 21 18 26 26 H 1.48497 * 109.47338 * 89.99731 * 25 23 21 27 27 H 1.48494 * 109.47049 * 209.99921 * 25 23 21 28 28 H 1.48501 * 109.46892 * 329.99625 * 25 23 21 29 29 C 1.37936 * 119.92596 * 89.99819 * 9 6 3 30 30 H 1.09001 * 109.46808 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46972 * 299.99776 * 1 2 3 32 32 H 1.09003 * 109.47037 * 59.99899 * 1 2 3 33 33 H 1.08999 * 109.47294 * 240.00614 * 2 1 3 34 34 H 1.08999 * 109.47503 * 119.99973 * 2 1 3 35 35 H 1.08999 * 109.47026 * 34.99472 * 4 3 2 36 36 H 1.08990 * 109.47405 * 154.99890 * 4 3 2 37 37 H 1.08993 * 109.47366 * 299.99942 * 5 4 3 38 38 H 1.09007 * 109.46729 * 59.99586 * 5 4 3 39 39 H 1.09002 * 109.47236 * 179.97438 * 5 4 3 40 40 H 1.08008 * 119.85096 * 359.97438 * 10 9 6 41 41 H 1.08001 * 119.93226 * 179.97438 * 11 10 9 42 42 H 1.08004 * 120.07451 * 180.24916 * 12 11 10 43 43 H 1.09002 * 109.46783 * 91.69227 * 17 16 14 44 44 H 1.08997 * 109.46810 * 331.69860 * 17 16 14 45 45 H 1.08998 * 109.47233 * 211.69533 * 17 16 14 46 46 H 1.08996 * 109.47301 * 59.99890 * 20 18 16 47 47 H 1.08999 * 109.47666 * 180.02562 * 20 18 16 48 48 H 1.09010 * 109.47066 * 300.00124 * 20 18 16 49 49 H 0.96996 * 120.00070 * 180.02562 * 24 23 21 50 50 H 1.08004 * 120.07351 * 0.02693 * 29 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1583 2.1088 -1.2638 5 6 3.5152 1.7841 -1.8917 6 16 2.4122 2.1202 1.4287 7 8 1.6869 1.4415 2.4448 8 8 2.3057 3.5186 1.1999 9 6 4.1170 1.7941 1.7320 10 6 4.4881 0.6694 2.4478 11 6 5.8243 0.4058 2.6899 12 6 6.7967 1.2613 2.2139 13 6 6.4290 2.3998 1.4955 14 6 7.4653 3.3233 0.9864 15 8 7.3465 3.8221 -0.1157 16 7 8.5416 3.6122 1.7444 17 6 8.7332 2.9389 3.0314 18 6 9.5201 4.5993 1.2813 19 1 9.2111 4.9899 0.3118 20 6 9.6034 5.7467 2.2899 21 6 10.8714 3.9448 1.1522 22 1 10.9895 2.8982 1.3908 23 6 11.9568 4.6819 0.7285 24 7 13.1362 4.1110 0.6163 25 14 11.7524 6.4922 0.3150 26 1 11.9883 7.3079 1.5332 27 1 12.7318 6.8740 -0.7337 28 1 10.3744 6.7336 -0.1832 29 6 5.0788 2.6601 1.2551 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.3618 1.8098 -1.9452 36 1 2.0922 3.1803 -1.0755 37 1 4.3117 2.0830 -1.2104 38 1 3.5813 0.7124 -2.0800 39 1 3.6191 2.3251 -2.8323 40 1 3.7310 -0.0055 2.8191 41 1 6.1073 -0.4735 3.2496 42 1 7.8398 1.0522 2.4001 43 1 9.3363 2.0426 2.8863 44 1 7.7634 2.6613 3.4441 45 1 9.2426 3.6119 3.7212 46 1 9.9122 5.3564 3.2596 47 1 10.3311 6.4814 1.9452 48 1 8.6259 6.2201 2.3833 49 1 13.8998 4.6297 0.3186 50 1 4.7879 3.5376 0.6966 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065488261.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:39 Heat of formation + Delta-G solvation = -61.812230 kcal Electronic energy + Delta-G solvation = -32452.390124 eV Core-core repulsion = 28186.758930 eV Total energy + Delta-G solvation = -4265.631194 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.160 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.23823 -38.28826 -37.53756 -37.48386 -36.05904 -35.70253 -33.13691 -32.27803 -31.73923 -31.34893 -29.97802 -29.10439 -26.60610 -25.23625 -24.14797 -24.04432 -23.38455 -22.42427 -21.37453 -19.57677 -18.78268 -17.96617 -17.65152 -16.93508 -16.72291 -16.52432 -15.99000 -15.71992 -15.41756 -15.05948 -14.72138 -14.47228 -14.26878 -14.16321 -13.92685 -13.71324 -13.38345 -13.27378 -13.08969 -12.94702 -12.69534 -12.42619 -12.37280 -12.30822 -12.28946 -12.25276 -12.08200 -12.00868 -11.91672 -11.79020 -11.63015 -11.32199 -11.23329 -11.09330 -10.95254 -10.72596 -10.20148 -9.75810 -9.60227 -9.48037 -9.41044 -9.30445 -9.09737 -8.69671 -7.88105 -6.20767 -4.22114 0.09784 0.55201 0.91539 2.58963 2.93648 3.19423 3.33262 3.35251 3.46008 3.49632 3.67869 4.04622 4.29844 4.32811 4.55766 4.61352 4.73475 4.79048 4.82294 4.93147 5.03160 5.04418 5.10005 5.12580 5.15512 5.24368 5.36756 5.40444 5.50621 5.59192 5.61819 5.63357 5.74864 5.84104 5.86795 5.90616 5.97922 6.05596 6.07796 6.07931 6.17149 6.25533 6.27609 6.39203 6.52324 6.76478 7.01502 7.20047 7.53770 8.01917 8.36253 8.67373 8.79720 9.39629 10.91786 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.018079 B = 0.002511 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.350100 B =11147.283989 C =11611.941455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.120 3.880 3 N -0.996 5.996 4 C 0.110 3.890 5 C -0.180 4.180 6 S 2.692 3.308 7 O -0.955 6.955 8 O -0.952 6.952 9 C -0.687 4.687 10 C -0.009 4.009 11 C -0.146 4.146 12 C -0.037 4.037 13 C -0.134 4.134 14 C 0.546 3.454 15 O -0.540 6.540 16 N -0.578 5.578 17 C 0.076 3.924 18 C 0.229 3.771 19 H 0.065 0.935 20 C -0.163 4.163 21 C -0.529 4.529 22 H 0.079 0.921 23 C 0.077 3.923 24 N -0.894 5.894 25 Si 0.883 3.117 26 H -0.276 1.276 27 H -0.293 1.293 28 H -0.263 1.263 29 C 0.028 3.972 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.147 0.853 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.052 0.948 48 H 0.034 0.966 49 H 0.267 0.733 50 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.978 -10.488 1.930 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.005 4.005 3 N -0.834 5.834 4 C -0.015 4.015 5 C -0.238 4.238 6 S 2.783 3.217 7 O -0.945 6.945 8 O -0.943 6.943 9 C -0.773 4.773 10 C -0.029 4.029 11 C -0.165 4.165 12 C -0.056 4.056 13 C -0.138 4.138 14 C 0.333 3.667 15 O -0.419 6.419 16 N -0.307 5.307 17 C -0.067 4.067 18 C 0.128 3.872 19 H 0.083 0.917 20 C -0.221 4.221 21 C -0.567 4.567 22 H 0.097 0.903 23 C -0.127 4.127 24 N -0.531 5.531 25 Si 0.712 3.288 26 H -0.203 1.203 27 H -0.220 1.220 28 H -0.188 1.188 29 C 0.008 3.992 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.165 0.835 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.054 0.946 49 H 0.077 0.923 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -23.360 -9.703 1.815 25.360 hybrid contribution 1.075 0.524 -0.237 1.219 sum -22.285 -9.179 1.577 24.153 Atomic orbital electron populations 1.22223 0.95662 1.02568 1.02824 1.21254 0.94738 0.81126 1.03394 1.57608 1.79439 1.24041 1.22326 1.21439 0.98326 0.97234 0.84509 1.22292 0.97235 1.02411 1.01907 1.02034 0.73696 0.73448 0.72572 1.93571 1.69768 1.75520 1.55660 1.93587 1.86229 1.29488 1.84966 1.30916 1.25290 1.06183 1.14943 1.21003 0.97254 0.93207 0.91416 1.21252 0.92554 1.00541 1.02107 1.22094 1.01274 0.91604 0.90599 1.20279 0.94342 0.97544 1.01647 1.18149 0.81734 0.81620 0.85203 1.90755 1.77936 1.53570 1.19661 1.47809 1.22425 1.41150 1.19352 1.21991 1.00442 0.98373 0.85905 1.19365 0.88008 0.85307 0.94554 0.91745 1.22476 0.99265 0.99165 1.01187 1.21103 0.90458 0.98546 1.46577 0.90338 1.24857 0.94958 0.98396 0.94445 1.69862 0.99928 1.36763 1.46526 0.86921 0.78416 0.85549 0.77872 1.20329 1.22049 1.18753 1.20895 0.90937 0.96117 0.91285 0.91321 0.91780 0.92181 0.90098 0.90073 0.89779 0.88724 0.91964 0.92128 0.90947 0.84218 0.84387 0.83522 0.92255 0.91974 0.90537 0.92409 0.92924 0.94648 0.92350 0.83612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.24 37.16 0.38 -0.69 16 2 C 0.12 0.79 6.07 -4.04 -0.02 0.77 16 3 N -1.00 -8.70 2.78 -114.38 -0.32 -9.02 16 4 C 0.11 0.88 6.40 -4.04 -0.03 0.86 16 5 C -0.18 -1.58 10.24 37.16 0.38 -1.20 16 6 S 2.69 31.20 5.64 -107.50 -0.61 30.59 16 7 O -0.95 -12.15 16.24 -57.17 -0.93 -13.08 16 8 O -0.95 -13.74 15.83 -57.17 -0.90 -14.65 16 9 C -0.69 -8.24 5.97 -39.64 -0.24 -8.48 16 10 C -0.01 -0.09 9.52 -39.49 -0.38 -0.47 16 11 C -0.15 -1.44 10.03 -39.64 -0.40 -1.84 16 12 C -0.04 -0.46 7.47 -39.19 -0.29 -0.76 16 13 C -0.13 -2.09 5.22 -104.97 -0.55 -2.64 16 14 C 0.55 10.95 7.35 -12.33 -0.09 10.86 16 15 O -0.54 -12.71 16.26 5.32 0.09 -12.62 16 16 N -0.58 -11.68 2.75 -176.38 -0.49 -12.17 16 17 C 0.08 1.20 8.14 59.85 0.49 1.68 16 18 C 0.23 5.44 2.23 -69.08 -0.15 5.29 16 19 H 0.06 1.70 5.96 -51.93 -0.31 1.39 16 20 C -0.16 -3.46 8.65 37.16 0.32 -3.13 16 21 C -0.53 -14.31 8.95 -34.44 -0.31 -14.62 16 22 H 0.08 2.27 7.85 -52.49 -0.41 1.86 16 23 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 24 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 25 Si 0.88 21.56 24.37 -169.99 -4.14 17.41 16 26 H -0.28 -6.45 6.87 56.52 0.39 -6.06 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 29 C 0.03 0.40 8.00 -39.18 -0.31 0.09 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 34 H 0.08 0.48 7.61 -51.93 -0.40 0.09 16 35 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 36 H 0.09 0.84 6.91 -51.93 -0.36 0.48 16 37 H 0.06 0.68 7.00 -51.93 -0.36 0.32 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.14 1.08 7.61 -52.48 -0.40 0.68 16 41 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.15 1.70 5.55 -52.48 -0.29 1.41 16 43 H 0.06 0.90 7.23 -51.93 -0.38 0.52 16 44 H 0.06 0.79 5.38 -51.93 -0.28 0.52 16 45 H 0.08 1.19 6.43 -51.93 -0.33 0.86 16 46 H 0.06 1.13 6.67 -51.93 -0.35 0.78 16 47 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 48 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 49 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 50 H 0.15 2.16 7.61 -52.48 -0.40 1.76 16 LS Contribution 404.77 15.07 6.10 6.10 Total: -1.00 -35.42 404.77 -9.14 -44.56 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.42 Total: 0.82 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -1.30 Total: -12.24 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.03 Total: -46.89 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.75 Total: -40.34 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.14 Total: 17.41 kcal Atomic # 16 Polarization: 31.20 SS G_CDS: -0.61 Total: 30.59 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.42 -9.14 -44.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065488261.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.255 kcal (2) G-P(sol) polarization free energy of solvation -35.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds