Wall clock time and date at job start Tue Mar 31 2020 07:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46684 * 179.97438 * 4 3 2 6 6 C 1.38588 * 126.38599 * 269.71373 * 5 4 3 7 7 C 1.38646 * 133.87067 * 0.02562 * 6 5 4 8 8 C 1.37966 * 119.87322 * 180.02562 * 7 6 5 9 9 C 1.38803 * 120.41751 * 359.97438 * 8 7 6 10 10 Cl 1.73601 * 119.76083 * 180.02562 * 9 8 7 11 11 C 1.37796 * 120.46901 * 359.66409 * 9 8 7 12 12 C 1.39722 * 119.76567 * 0.53425 * 11 9 8 13 13 N 1.35875 * 133.36052 * 179.33265 * 12 11 9 14 14 C 1.31056 * 109.62897 * 180.02562 * 13 12 11 15 15 S 1.76202 * 125.07638 * 179.97438 * 14 13 12 16 16 C 1.80997 * 99.99872 * 0.02562 * 15 14 13 17 17 C 1.50700 * 109.46982 * 179.97438 * 16 15 14 18 18 O 1.21292 * 120.00013 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00204 * 179.97438 * 17 16 15 20 20 C 1.37102 * 120.00207 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99731 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00242 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99636 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00054 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47638 * 59.99641 * 24 22 20 26 26 H 1.48503 * 109.46979 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46978 * 299.99552 * 24 22 20 28 28 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 29 29 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 31 31 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 32 32 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 33 33 H 1.09000 * 109.47486 * 300.00062 * 4 3 2 34 34 H 1.09001 * 109.47362 * 60.00784 * 4 3 2 35 35 H 1.08000 * 120.06251 * 0.04307 * 7 6 5 36 36 H 1.07999 * 119.78883 * 180.02562 * 8 7 6 37 37 H 1.07998 * 120.11149 * 179.97438 * 11 9 8 38 38 H 1.08998 * 109.47411 * 299.99720 * 16 15 14 39 39 H 1.08997 * 109.47172 * 60.00022 * 16 15 14 40 40 H 0.96997 * 120.00099 * 0.02562 * 19 17 16 41 41 H 0.97003 * 120.00099 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5231 0.0000 6 6 4.4711 3.2712 -1.1160 7 6 4.3820 3.0534 -2.4823 8 6 4.8192 4.0217 -3.3625 9 6 5.3480 5.2146 -2.8891 10 17 5.8924 6.4215 -4.0118 11 6 5.4370 5.4505 -1.5344 12 6 5.0022 4.4776 -0.6308 13 7 4.9718 4.4116 0.7260 14 6 4.4601 3.2643 1.0996 15 16 4.2319 2.7535 2.7705 16 6 4.8786 4.2065 3.6344 17 6 4.7811 3.9907 5.1227 18 8 4.3194 2.9564 5.5566 19 7 5.2070 4.9469 5.9717 20 6 5.1179 4.7508 7.3257 21 1 4.7067 3.8298 7.7119 22 6 5.5565 5.7368 8.2009 23 7 6.0572 6.8571 7.7309 24 14 5.4356 5.4692 10.0456 25 1 6.2297 4.2733 10.4255 26 1 5.9656 6.6616 10.7545 27 1 4.0148 5.2604 10.4234 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6885 1.8465 -0.8900 32 1 1.6885 1.8463 0.8900 33 1 3.8567 0.6439 0.8908 34 1 3.8574 0.6437 -0.8892 35 1 3.9709 2.1276 -2.8569 36 1 4.7488 3.8508 -4.4265 37 1 5.8498 6.3805 -1.1724 38 1 5.9214 4.3602 3.3568 39 1 4.2954 5.0842 3.3560 40 1 5.5760 5.7742 5.6248 41 1 6.3631 7.5457 8.3418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065513401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:13 Heat of formation + Delta-G solvation = -13.218852 kcal Electronic energy + Delta-G solvation = -27125.485960 eV Core-core repulsion = 22965.578997 eV Total energy + Delta-G solvation = -4159.906963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 369.070 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.25879 -38.45326 -38.26018 -37.86632 -36.28577 -34.83243 -34.12927 -31.48328 -31.15650 -29.93821 -29.28290 -29.12616 -26.62462 -24.78451 -23.86914 -23.82789 -22.40520 -21.00162 -19.67799 -18.24866 -17.81407 -17.71056 -17.03458 -16.62043 -16.35454 -16.02955 -15.99845 -15.29958 -15.06815 -14.62432 -14.58662 -14.54101 -14.41661 -14.11783 -13.72794 -13.33043 -13.26180 -12.84762 -12.60168 -12.55633 -12.16699 -12.11808 -11.95693 -11.72470 -11.61261 -11.32755 -11.22744 -11.11121 -10.62111 -10.52980 -10.51154 -10.31018 -10.21301 -10.11925 -9.64901 -9.11974 -8.71819 -8.41527 -8.13646 -7.46826 -6.53877 -3.96090 0.55749 1.02461 1.06887 1.85608 2.16543 2.30672 2.39615 3.12366 3.20792 3.24804 3.44475 3.51037 3.67838 4.07601 4.09494 4.22666 4.49871 4.59784 4.73157 4.80677 4.81867 4.90243 4.94214 4.99284 5.00826 5.08449 5.11180 5.27090 5.32586 5.38039 5.58391 5.62695 5.75546 5.92660 6.01140 6.07386 6.14910 6.35923 6.54999 6.68247 7.43824 7.48621 7.87626 8.40428 9.01107 9.34336 9.82450 10.62830 Molecular weight = 369.07amu Principal moments of inertia in cm(-1) A = 0.008464 B = 0.002384 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3307.186340 B =11742.743290 C =14777.545604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.045 3.955 4 C 0.113 3.887 5 N -0.474 5.474 6 C 0.053 3.947 7 C -0.092 4.092 8 C -0.101 4.101 9 C -0.041 4.041 10 Cl -0.069 7.069 11 C -0.057 4.057 12 C 0.074 3.926 13 N -0.493 5.493 14 C 0.261 3.739 15 S 0.080 5.920 16 C -0.125 4.125 17 C 0.448 3.552 18 O -0.586 6.586 19 N -0.544 5.544 20 C -0.305 4.305 21 H 0.106 0.894 22 C 0.027 3.973 23 N -0.894 5.894 24 Si 0.934 3.066 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.396 0.604 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.658 -7.008 -23.394 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.033 4.033 4 C -0.010 4.010 5 N -0.167 5.167 6 C -0.058 4.058 7 C -0.114 4.114 8 C -0.122 4.122 9 C -0.070 4.070 10 Cl -0.040 7.040 11 C -0.078 4.078 12 C -0.047 4.047 13 N -0.217 5.217 14 C -0.111 4.111 15 S 0.311 5.689 16 C -0.277 4.277 17 C 0.232 3.768 18 O -0.473 6.473 19 N -0.178 5.178 20 C -0.435 4.435 21 H 0.124 0.876 22 C -0.176 4.176 23 N -0.534 5.534 24 Si 0.761 3.239 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.230 0.770 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.951 -8.075 -22.036 24.212 hybrid contribution 0.303 1.459 -0.488 1.568 sum -5.648 -6.617 -22.524 24.146 Atomic orbital electron populations 1.22797 0.79952 1.03164 1.00441 1.87794 1.20557 1.26513 1.95575 1.22788 0.92799 0.85777 1.01906 1.21581 0.92421 0.80545 1.06444 1.45032 1.52136 1.15725 1.03838 1.18958 1.04077 0.93547 0.89184 1.19808 1.02994 1.00196 0.88385 1.20670 0.99777 0.91752 0.99979 1.20407 1.04550 0.92027 0.90004 1.98367 1.88692 1.55656 1.61282 1.20031 0.99612 0.98841 0.89349 1.18822 1.02011 0.93413 0.90430 1.71141 1.23250 1.17130 1.10211 1.26510 0.98134 0.89940 0.96483 1.86327 1.76954 1.22569 0.83035 1.23695 1.06464 0.99487 0.98085 1.18896 0.86287 0.86287 0.85331 1.90560 1.51238 1.27864 1.77598 1.41736 1.53327 1.16544 1.06236 1.19705 1.39621 1.03980 0.80160 0.87601 1.25333 0.96308 0.94898 1.01083 1.69609 1.40576 1.06600 1.36585 0.85860 0.78940 0.77801 0.81320 1.19694 1.20825 1.19718 0.93953 0.89121 0.93436 0.92604 0.91681 0.87203 0.87906 0.85115 0.84287 0.84109 0.86984 0.87023 0.76966 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.70 10.70 -35.23 -0.38 -4.08 16 3 C 0.05 0.42 6.26 37.16 0.23 0.65 16 4 C 0.11 1.07 6.31 -4.04 -0.03 1.05 16 5 N -0.47 -5.81 2.84 -114.31 -0.32 -6.14 16 6 C 0.05 0.64 6.88 -83.82 -0.58 0.07 16 7 C -0.09 -0.86 10.04 -39.53 -0.40 -1.26 16 8 C -0.10 -0.89 9.81 -39.47 -0.39 -1.28 16 9 C -0.04 -0.42 6.31 -39.53 -0.25 -0.67 16 10 Cl -0.07 -0.65 28.94 -51.86 -1.50 -2.15 16 11 C -0.06 -0.70 9.87 -39.19 -0.39 -1.08 16 12 C 0.07 1.05 7.22 -84.69 -0.61 0.44 16 13 N -0.49 -7.87 10.57 -10.90 -0.12 -7.98 16 14 C 0.26 3.87 7.93 -88.45 -0.70 3.17 16 15 S 0.08 1.28 20.68 -107.50 -2.22 -0.94 16 16 C -0.12 -2.24 5.64 36.01 0.20 -2.03 16 17 C 0.45 10.27 7.80 -10.98 -0.09 10.18 16 18 O -0.59 -15.21 15.44 5.55 0.09 -15.13 16 19 N -0.54 -13.42 5.29 -10.96 -0.06 -13.48 16 20 C -0.31 -8.24 9.68 -14.93 -0.14 -8.39 16 21 H 0.11 2.97 7.16 -52.48 -0.38 2.60 16 22 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 23 N -0.89 -23.70 13.05 55.50 0.72 -22.98 16 24 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 27 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.11 1.07 7.68 -51.93 -0.40 0.68 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.11 1.89 8.14 -51.92 -0.42 1.47 16 39 H 0.11 1.88 8.14 -51.92 -0.42 1.45 16 40 H 0.40 9.39 7.90 -40.82 -0.32 9.07 16 41 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -31.10 388.97 -9.95 -41.05 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -4.88 Total: 7.76 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.11 Total: 2.80 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.23 Total: -50.57 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.29 Total: -19.21 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.22 Total: -0.94 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.10 -9.95 -41.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065513401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.828 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds