Wall clock time and date at job start Tue Mar 31 2020 05:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99919 * 2 1 4 4 C 1.53006 * 109.46626 * 293.94915 * 3 2 1 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 6 6 O 1.42905 * 109.46735 * 179.97438 * 5 4 3 7 7 C 1.35905 * 116.99846 * 180.02562 * 6 5 4 8 8 C 1.38730 * 120.05329 * 359.72597 * 7 6 5 9 9 C 1.38148 * 119.93826 * 179.74257 * 8 7 6 10 10 C 1.38261 * 120.05795 * 0.51451 * 9 8 7 11 11 C 1.38268 * 120.11398 * 359.76432 * 10 9 8 12 12 C 1.38150 * 120.05224 * 359.97438 * 11 10 9 13 13 C 1.38111 * 110.99704 * 123.94586 * 2 1 3 14 14 N 1.32864 * 120.81344 * 235.76383 * 13 2 1 15 15 C 1.32123 * 121.19086 * 179.69823 * 14 13 2 16 16 N 1.31509 * 122.64489 * 0.63956 * 15 14 13 17 17 C 1.33190 * 120.68593 * 359.66877 * 16 15 14 18 18 C 1.40820 * 120.81110 * 56.05144 * 13 2 1 19 19 C 1.41164 * 134.69996 * 0.02562 * 18 13 2 20 20 N 1.30248 * 108.46693 * 179.97438 * 19 18 13 21 21 N 1.36308 * 134.61751 * 179.97438 * 17 16 15 22 22 C 1.46503 * 125.87195 * 359.97438 * 21 17 16 23 23 C 1.50699 * 109.46824 * 90.00031 * 22 21 17 24 24 H 1.07998 * 120.00527 * 359.97438 * 23 22 21 25 25 C 1.37886 * 119.99968 * 180.02562 * 23 22 21 26 26 N 1.31514 * 119.99798 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00163 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.46972 * 89.99653 * 27 25 23 29 29 H 1.48493 * 109.47117 * 209.99998 * 27 25 23 30 30 H 1.48501 * 109.46850 * 330.00231 * 27 25 23 31 31 H 1.08997 * 109.46955 * 60.00491 * 1 2 3 32 32 H 1.09001 * 109.46689 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47393 * 300.00487 * 1 2 3 34 34 H 1.09000 * 109.47263 * 173.95221 * 3 2 1 35 35 H 1.09001 * 109.47582 * 53.94500 * 3 2 1 36 36 H 1.08993 * 109.46955 * 300.00347 * 4 3 2 37 37 H 1.09000 * 109.47050 * 60.00176 * 4 3 2 38 38 H 1.08993 * 109.47839 * 299.99931 * 5 4 3 39 39 H 1.09000 * 109.47160 * 60.00369 * 5 4 3 40 40 H 1.07995 * 120.03501 * 0.02562 * 8 7 6 41 41 H 1.08005 * 119.97089 * 180.27420 * 9 8 7 42 42 H 1.08001 * 119.94735 * 179.73944 * 10 9 8 43 43 H 1.07998 * 119.97870 * 180.02562 * 11 10 9 44 44 H 1.07991 * 120.02790 * 179.97438 * 12 11 10 45 45 H 1.07999 * 118.67882 * 180.28759 * 15 14 13 46 46 H 1.07996 * 125.76747 * 359.95504 * 19 18 13 47 47 H 1.08999 * 109.47232 * 210.00057 * 22 21 17 48 48 H 1.09000 * 109.47078 * 329.99956 * 22 21 17 49 49 H 0.96996 * 120.00048 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0573 -1.3184 5 6 2.1792 3.4859 -1.3181 6 8 1.8398 4.1263 -2.5497 7 6 2.2552 5.4101 -2.7126 8 6 2.9697 6.0422 -1.7053 9 6 3.3954 7.3454 -1.8755 10 6 3.1007 8.0231 -3.0440 11 6 2.3838 7.3973 -4.0470 12 6 1.9604 6.0924 -3.8840 13 6 1.9639 -0.7200 1.0696 14 7 2.8072 -0.1638 1.9327 15 6 3.2805 -0.8438 2.9618 16 7 2.9630 -2.0996 3.1889 17 6 2.1291 -2.7473 2.3770 18 6 1.5918 -2.0635 1.2688 19 6 0.7530 -2.9727 0.5888 20 7 0.7755 -4.1093 1.2244 21 7 1.6181 -4.0104 2.3389 22 6 1.9016 -5.0805 3.2985 23 6 0.8988 -5.0263 4.4221 24 1 0.1277 -4.2701 4.4217 25 6 0.9664 -5.9414 5.4512 26 7 1.9057 -6.8619 5.4520 27 14 -0.2771 -5.8747 6.8436 28 1 -1.4495 -6.7192 6.5011 29 1 0.3495 -6.3801 8.0914 30 1 -0.7197 -4.4716 7.0451 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 3.0798 1.3445 0.1083 35 1 1.5611 1.9275 0.8308 36 1 2.0659 1.5013 -2.1492 37 1 0.5472 2.0843 -1.4267 38 1 1.7445 4.0417 -0.4874 39 1 3.2635 3.4593 -1.2097 40 1 3.1970 5.5145 -0.7909 41 1 3.9555 7.8365 -1.0935 42 1 3.4308 9.0433 -3.1734 43 1 2.1552 7.9287 -4.9590 44 1 1.4001 5.6041 -4.6674 45 1 3.9600 -0.3502 3.6409 46 1 0.1880 -2.7615 -0.3070 47 1 1.8334 -6.0458 2.7969 48 1 2.9060 -4.9505 3.7013 49 1 1.9530 -7.5060 6.1757 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065519849.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:58 Heat of formation + Delta-G solvation = 116.833372 kcal Electronic energy + Delta-G solvation = -31073.500754 eV Core-core repulsion = 26810.183677 eV Total energy + Delta-G solvation = -4263.317078 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.175 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.67650 -40.46774 -39.13365 -37.97116 -37.44554 -34.03841 -33.36195 -32.19615 -31.51129 -31.34750 -30.19297 -29.60971 -27.66009 -27.01026 -25.72870 -23.77379 -23.44449 -22.99528 -22.61446 -21.96818 -21.09795 -20.07476 -18.63618 -17.67000 -17.47001 -16.75367 -16.74479 -16.49069 -16.32787 -16.02787 -15.65331 -14.98370 -14.87402 -14.77103 -14.61127 -14.25582 -13.94272 -13.89752 -13.83354 -13.63675 -13.33049 -12.99629 -12.82318 -12.35434 -12.23603 -12.02876 -11.96977 -11.91565 -11.64224 -11.56863 -11.22545 -11.15512 -11.09857 -10.90650 -10.85768 -10.81009 -10.33622 -10.23812 -9.86171 -9.40325 -9.36235 -8.87592 -8.64599 -8.58575 -8.41237 -7.93203 -6.26696 -4.33691 0.94081 0.97660 1.06255 1.69821 2.66902 2.85893 2.93639 3.21004 3.26819 3.32010 3.39771 3.40530 4.15533 4.28185 4.32119 4.41003 4.48644 4.49771 4.60214 4.66215 4.73476 4.73890 4.89779 4.92251 4.98022 4.99471 5.02590 5.08925 5.11357 5.20312 5.23137 5.28961 5.40289 5.42739 5.52752 5.60643 5.67723 5.73616 5.85838 5.93679 6.01747 6.14183 6.21501 6.34323 6.38722 6.56890 6.96564 6.98386 7.03559 7.05135 7.23366 7.58750 7.74881 7.85041 8.09143 8.57075 8.69892 9.31628 10.81579 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.024801 B = 0.001477 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.713412 B =18947.918517 C =19319.939169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.472 5.472 3 C 0.068 3.932 4 C -0.120 4.120 5 C 0.063 3.937 6 O -0.314 6.314 7 C 0.133 3.867 8 C -0.210 4.210 9 C -0.080 4.080 10 C -0.162 4.162 11 C -0.082 4.082 12 C -0.155 4.155 13 C 0.431 3.569 14 N -0.599 5.599 15 C 0.349 3.651 16 N -0.532 5.532 17 C 0.352 3.648 18 C -0.297 4.297 19 C 0.069 3.931 20 N -0.234 5.234 21 N -0.331 5.331 22 C 0.263 3.737 23 C -0.536 4.536 24 H 0.061 0.939 25 C 0.068 3.932 26 N -0.890 5.890 27 Si 0.908 3.092 28 H -0.277 1.277 29 H -0.282 1.282 30 H -0.273 1.273 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.197 0.803 46 H 0.190 0.810 47 H 0.056 0.944 48 H 0.060 0.940 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.906 26.660 -16.661 31.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.188 5.188 3 C -0.058 4.058 4 C -0.158 4.158 5 C -0.013 4.013 6 O -0.228 6.228 7 C 0.087 3.913 8 C -0.228 4.228 9 C -0.099 4.099 10 C -0.181 4.181 11 C -0.100 4.100 12 C -0.174 4.174 13 C 0.181 3.819 14 N -0.324 5.324 15 C 0.055 3.945 16 N -0.254 5.254 17 C 0.103 3.897 18 C -0.313 4.313 19 C -0.126 4.126 20 N -0.050 5.050 21 N -0.117 5.117 22 C 0.146 3.854 23 C -0.575 4.575 24 H 0.080 0.920 25 C -0.136 4.136 26 N -0.528 5.528 27 Si 0.735 3.265 28 H -0.203 1.203 29 H -0.208 1.208 30 H -0.198 1.198 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.214 0.786 46 H 0.206 0.794 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.182 25.055 -16.327 29.928 hybrid contribution -0.858 0.678 1.144 1.582 sum 0.324 25.732 -15.183 29.880 Atomic orbital electron populations 1.22711 0.83158 1.04416 1.02259 1.58544 1.09586 1.14767 1.35926 1.21899 1.02354 0.85827 0.95765 1.21581 1.02417 0.92782 0.99023 1.22732 1.00355 0.93453 0.84756 1.86051 1.73934 1.23588 1.39233 1.19044 0.93995 0.83851 0.94385 1.21330 1.04362 0.97158 0.99975 1.20987 0.97743 0.93748 0.97373 1.21080 1.01901 1.00513 0.94558 1.20986 0.96418 0.93733 0.98866 1.20481 1.04964 0.95055 0.96860 1.19393 0.88646 0.88259 0.85556 1.68318 1.18331 1.39009 1.06765 1.24514 0.93274 0.85578 0.91097 1.67521 1.16887 1.10109 1.30910 1.19026 0.92116 0.87922 0.90634 1.19668 1.11529 0.96458 1.03649 1.23579 0.99144 0.89753 1.00078 1.76986 1.09426 1.21847 0.96725 1.49537 1.32969 1.08454 1.20781 1.19835 0.98262 0.82820 0.84461 1.21233 1.14241 1.16017 1.05968 0.92046 1.24897 0.95991 0.94656 0.98054 1.69914 1.32506 1.17048 1.33293 0.86332 0.80835 0.78502 0.80859 1.20281 1.20754 1.19798 0.89484 0.89536 0.93835 0.88638 0.92650 0.89693 0.90510 0.91797 0.91565 0.85302 0.85780 0.85971 0.85418 0.85207 0.78649 0.79378 0.92641 0.92217 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.07 60.07 0.54 0.74 16 2 N -0.47 -5.42 4.78 -180.64 -0.86 -6.29 16 3 C 0.07 0.64 4.24 -3.82 -0.02 0.62 16 4 C -0.12 -0.90 5.51 -26.73 -0.15 -1.05 16 5 C 0.06 0.46 4.74 37.16 0.18 0.63 16 6 O -0.31 -2.92 10.14 -19.44 -0.20 -3.12 16 7 C 0.13 1.19 6.69 -39.22 -0.26 0.93 16 8 C -0.21 -1.65 9.04 -39.43 -0.36 -2.00 16 9 C -0.08 -0.56 10.04 -39.61 -0.40 -0.95 16 10 C -0.16 -1.05 10.04 -39.56 -0.40 -1.45 16 11 C -0.08 -0.54 10.04 -39.60 -0.40 -0.94 16 12 C -0.15 -1.24 9.99 -39.43 -0.39 -1.63 16 13 C 0.43 6.55 6.42 -154.84 -0.99 5.56 16 14 N -0.60 -9.09 8.76 -13.62 -0.12 -9.21 16 15 C 0.35 5.63 12.24 -92.12 -1.13 4.51 16 16 N -0.53 -10.92 10.47 -13.97 -0.15 -11.07 16 17 C 0.35 7.59 8.04 -156.24 -1.26 6.34 16 18 C -0.30 -5.31 5.74 -106.82 -0.61 -5.92 16 19 C 0.07 1.17 10.73 -17.11 -0.18 0.98 16 20 N -0.23 -4.92 12.45 30.80 0.38 -4.53 16 21 N -0.33 -7.78 3.63 -61.64 -0.22 -8.00 16 22 C 0.26 6.91 6.19 -5.19 -0.03 6.88 16 23 C -0.54 -15.09 9.39 -34.44 -0.32 -15.41 16 24 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 25 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 26 N -0.89 -25.45 13.29 55.43 0.74 -24.72 16 27 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 30 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 31 H 0.09 0.59 6.47 -51.93 -0.34 0.25 16 32 H 0.09 0.83 5.04 -51.93 -0.26 0.57 16 33 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.97 7.54 -51.93 -0.39 0.58 16 35 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.54 6.55 -51.93 -0.34 0.20 16 38 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 39 H 0.07 0.44 7.67 -51.93 -0.40 0.05 16 40 H 0.13 0.84 6.30 -52.49 -0.33 0.51 16 41 H 0.12 0.61 8.06 -52.48 -0.42 0.18 16 42 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 44 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.20 2.34 8.06 -52.49 -0.42 1.92 16 46 H 0.19 2.26 6.86 -52.49 -0.36 1.90 16 47 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 48 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 49 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 409.16 15.07 6.17 6.17 Total: -1.00 -33.02 409.16 -12.15 -45.17 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.59 Total: -0.39 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -6.28 Total: -0.40 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -0.23 Total: -63.82 kcal Atomic # 8 Polarization: -2.92 SS G_CDS: -0.20 Total: -3.12 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.02 -12.15 -45.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519849.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.002 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds