Wall clock time and date at job start Tue Mar 31 2020 06:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99672 * 2 1 4 4 H 1.48498 * 109.47240 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47167 * 299.99967 * 3 2 1 6 6 H 1.48505 * 109.47142 * 60.00120 * 3 2 1 7 7 C 1.37875 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99804 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00122 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47134 * 180.02562 * 9 7 2 11 11 N 1.40055 * 125.87458 * 269.99915 * 10 9 7 12 12 C 1.30255 * 109.69591 * 179.97438 * 11 10 9 13 13 C 1.41165 * 108.46996 * 0.02562 * 12 11 10 14 14 C 1.36317 * 125.87125 * 90.00033 * 10 9 7 15 15 N 1.33197 * 134.61714 * 359.97438 * 14 10 9 16 16 C 1.31500 * 120.68326 * 179.97438 * 15 14 10 17 17 N 1.32126 * 122.64960 * 359.67224 * 16 15 14 18 18 C 1.32862 * 121.18649 * 0.63627 * 17 16 15 19 19 N 1.38114 * 120.81132 * 179.69796 * 18 17 16 20 20 C 1.46959 * 110.99941 * 359.71862 * 19 18 17 21 21 C 1.53043 * 109.36379 * 183.19103 * 20 19 18 22 22 N 1.46957 * 109.36479 * 301.59387 * 21 20 19 23 23 C 1.46900 * 110.99934 * 183.18919 * 22 21 20 24 24 C 1.50702 * 109.47076 * 170.00137 * 23 22 21 25 25 C 1.34512 * 125.79146 * 89.99965 * 24 23 22 26 26 C 1.41376 * 106.84688 * 179.75198 * 25 24 23 27 27 C 1.34517 * 106.83881 * 0.37683 * 26 25 24 28 28 O 1.34305 * 125.78962 * 269.98187 * 24 23 22 29 29 C 1.46959 * 110.87661 * 59.32363 * 22 21 20 30 30 C 1.46957 * 111.00258 * 123.51470 * 19 18 17 31 31 H 0.96996 * 120.00253 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.46946 * 59.99763 * 9 7 2 33 33 H 1.09003 * 109.47049 * 300.00039 * 9 7 2 34 34 H 1.08001 * 125.76418 * 179.97438 * 12 11 10 35 35 H 1.08007 * 118.67407 * 180.02562 * 16 15 14 36 36 H 1.09003 * 109.49165 * 63.21834 * 20 19 18 37 37 H 1.09008 * 109.50476 * 303.16647 * 20 19 18 38 38 H 1.09009 * 109.49088 * 181.63319 * 21 20 19 39 39 H 1.08997 * 109.49660 * 61.56814 * 21 20 19 40 40 H 1.09002 * 109.47050 * 50.00812 * 23 22 21 41 41 H 1.08998 * 109.47791 * 289.99928 * 23 22 21 42 42 H 1.08006 * 126.57585 * 359.97438 * 25 24 23 43 43 H 1.07998 * 126.58562 * 180.23597 * 26 25 24 44 44 H 1.08002 * 125.79423 * 179.89440 * 27 26 25 45 45 H 1.09000 * 109.48771 * 60.64648 * 29 22 21 46 46 H 1.09001 * 109.48874 * 180.71153 * 29 22 21 47 47 H 1.08996 * 109.48711 * 296.78121 * 30 19 18 48 48 H 1.09007 * 109.48585 * 56.82380 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 7 2.7365 -4.2364 -1.1354 12 6 3.5499 -5.1869 -0.7725 13 6 3.5864 -5.2299 0.6381 14 6 2.7223 -4.2197 1.1041 15 7 2.5795 -4.0522 2.4177 16 6 3.2318 -4.8161 3.2664 17 7 4.0466 -5.7804 2.8767 18 6 4.2600 -6.0218 1.5878 19 7 5.1181 -7.0279 1.1891 20 6 5.7022 -7.7130 2.3506 21 6 6.7045 -8.7643 1.8686 22 7 6.0214 -9.7201 0.9858 23 6 6.9342 -10.7902 0.5618 24 6 6.1499 -11.8738 -0.1322 25 6 5.8885 -11.9345 -1.4503 26 6 5.1352 -13.1115 -1.6649 27 6 4.9741 -13.6954 -0.4638 28 8 5.5936 -12.9430 0.4604 29 6 5.4373 -9.0351 -0.1757 30 6 4.4350 -7.9838 0.3063 31 1 -0.4850 0.8400 -0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6248 -2.5571 0.8897 34 1 4.1023 -5.8334 -1.4382 35 1 3.0916 -4.6521 4.3247 36 1 4.9113 -8.1994 2.9217 37 1 6.2130 -6.9864 2.9827 38 1 7.1177 -9.2936 2.7273 39 1 7.5099 -8.2749 1.3209 40 1 7.4357 -11.2073 1.4351 41 1 7.6772 -10.3835 -0.1242 42 1 6.1980 -11.2226 -2.2013 43 1 4.7591 -13.4714 -2.6111 44 1 4.4412 -14.6157 -0.2753 45 1 6.2282 -8.5487 -0.7467 46 1 4.9265 -9.7618 -0.8075 47 1 3.6297 -8.4732 0.8541 48 1 4.0215 -7.4545 -0.5522 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065520117.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:59 Heat of formation + Delta-G solvation = 164.615447 kcal Electronic energy + Delta-G solvation = -32578.949723 eV Core-core repulsion = 28252.278721 eV Total energy + Delta-G solvation = -4326.671002 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.170 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.86057 -41.68348 -39.81002 -38.33168 -36.35226 -33.83991 -33.30877 -32.61711 -31.77712 -31.33585 -30.77403 -29.71835 -27.57082 -27.17809 -24.83857 -24.41216 -23.30865 -23.19601 -22.35360 -21.99909 -20.71878 -20.43759 -19.96162 -17.72669 -17.66801 -17.57271 -16.76384 -16.67164 -16.29311 -15.69633 -15.44258 -15.30816 -15.08402 -15.00081 -14.62345 -14.48220 -14.27049 -14.11913 -13.74448 -13.37094 -13.16353 -13.13383 -13.00195 -12.81777 -12.46100 -12.21277 -12.06078 -11.77575 -11.59972 -11.35738 -11.26445 -11.12772 -11.06715 -10.87040 -10.78041 -10.31288 -10.22044 -10.20001 -9.80767 -9.33146 -8.95282 -8.83325 -8.67997 -8.63115 -8.36728 -7.90102 -6.24986 -4.31603 1.00728 1.38249 1.73612 2.27644 2.67101 2.86536 2.95982 3.21724 3.28806 3.32292 3.35710 3.53939 4.18578 4.29869 4.30893 4.34280 4.50964 4.62383 4.63251 4.70072 4.77347 4.81166 4.91663 4.94671 5.00462 5.09057 5.10667 5.14629 5.17814 5.23340 5.42291 5.46999 5.50127 5.55502 5.58904 5.66598 5.72445 5.77088 5.85309 6.16497 6.23820 6.33986 6.48816 6.59492 6.62673 6.85203 6.98062 7.02354 7.07122 7.27086 7.61993 7.77501 7.87030 8.11498 8.60861 8.72765 9.33729 10.83309 Molecular weight = 368.17amu Principal moments of inertia in cm(-1) A = 0.018927 B = 0.001943 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.980163 B =14409.175878 C =15067.200184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.062 0.938 9 C 0.263 3.737 10 N -0.331 5.331 11 N -0.234 5.234 12 C 0.068 3.932 13 C -0.296 4.296 14 C 0.351 3.649 15 N -0.533 5.533 16 C 0.350 3.650 17 N -0.596 5.596 18 C 0.432 3.568 19 N -0.472 5.472 20 C 0.070 3.930 21 C 0.055 3.945 22 N -0.538 5.538 23 C 0.133 3.867 24 C 0.000 4.000 25 C -0.207 4.207 26 C -0.214 4.214 27 C -0.040 4.040 28 O -0.169 6.169 29 C 0.052 3.948 30 C 0.062 3.938 31 H 0.268 0.732 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.187 0.813 35 H 0.197 0.803 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.201 0.799 45 H 0.050 0.950 46 H 0.091 0.909 47 H 0.058 0.942 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.494 -26.327 1.037 29.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.117 5.117 11 N -0.050 5.050 12 C -0.127 4.127 13 C -0.313 4.313 14 C 0.103 3.897 15 N -0.255 5.255 16 C 0.056 3.944 17 N -0.321 5.321 18 C 0.182 3.818 19 N -0.190 5.190 20 C -0.057 4.057 21 C -0.073 4.073 22 N -0.264 5.264 23 C 0.006 3.994 24 C -0.051 4.051 25 C -0.227 4.227 26 C -0.233 4.233 27 C -0.108 4.108 28 O -0.064 6.064 29 C -0.076 4.076 30 C -0.064 4.064 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.204 0.796 35 H 0.214 0.786 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.066 0.934 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.164 0.836 43 H 0.165 0.835 44 H 0.218 0.782 45 H 0.069 0.931 46 H 0.109 0.891 47 H 0.076 0.924 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.480 -25.268 1.194 28.207 hybrid contribution 0.877 0.567 -0.529 1.170 sum 13.357 -24.701 0.665 28.089 Atomic orbital electron populations 1.69926 1.06002 1.27589 1.49324 1.24906 0.94998 0.99408 0.94402 0.86278 0.79946 0.82473 0.77824 1.19680 1.20603 1.20568 1.21276 0.93597 0.89606 1.52757 0.91965 1.19837 0.85657 0.79826 1.00086 1.49517 1.35823 1.27717 0.98687 1.76974 1.10951 1.07674 1.09383 1.23535 0.98851 0.97857 0.92424 1.19670 1.09943 1.06142 0.95535 1.19032 0.91763 0.90380 0.88565 1.67522 1.28192 1.29603 1.00148 1.24521 0.86039 0.84529 0.99337 1.68325 1.24028 1.24158 1.15623 1.19363 0.84651 0.90006 0.87745 1.58815 1.29478 1.11773 1.18924 1.22088 0.97727 0.95252 0.90652 1.22295 0.95609 0.92532 0.96825 1.62126 1.34163 1.11963 1.18113 1.20424 0.91478 0.87864 0.99659 1.22190 1.01263 0.89954 0.91709 1.21632 1.04881 1.00505 0.95731 1.21832 1.04912 0.97529 0.99073 1.24054 1.01225 0.98442 0.87116 1.84037 1.54352 1.30206 1.37845 1.22317 0.97666 0.95433 0.92158 1.22410 0.95502 0.91603 0.96927 0.92272 0.92657 0.92227 0.79581 0.78648 0.91767 0.88626 0.89392 0.93411 0.88756 0.91222 0.83571 0.83499 0.78206 0.93143 0.89075 0.92373 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.53 -15.18 9.39 -34.44 -0.32 -15.50 16 8 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.26 6.95 6.19 -5.19 -0.03 6.92 16 10 N -0.33 -7.84 3.63 -61.64 -0.22 -8.07 16 11 N -0.23 -4.96 12.45 30.80 0.38 -4.57 16 12 C 0.07 1.16 10.74 -17.11 -0.18 0.98 16 13 C -0.30 -5.40 5.75 -106.82 -0.61 -6.02 16 14 C 0.35 7.69 8.04 -156.23 -1.26 6.43 16 15 N -0.53 -11.11 10.47 -13.97 -0.15 -11.25 16 16 C 0.35 5.80 12.24 -92.12 -1.13 4.67 16 17 N -0.60 -9.42 8.87 -13.62 -0.12 -9.54 16 18 C 0.43 6.80 6.43 -154.85 -1.00 5.81 16 19 N -0.47 -5.79 4.73 -172.64 -0.82 -6.61 16 20 C 0.07 0.72 4.80 -3.77 -0.02 0.71 16 21 C 0.06 0.43 5.61 -3.77 -0.02 0.41 16 22 N -0.54 -4.44 4.70 -235.91 -1.11 -5.55 16 23 C 0.13 0.90 5.50 -4.98 -0.03 0.87 16 24 C 0.00 0.00 6.23 -35.62 -0.22 -0.22 16 25 C -0.21 -1.62 9.32 -39.71 -0.37 -1.99 16 26 C -0.21 -1.58 10.91 -39.70 -0.43 -2.01 16 27 C -0.04 -0.29 12.09 29.42 0.36 0.07 16 28 O -0.17 -1.58 10.65 5.68 0.06 -1.52 16 29 C 0.05 0.44 5.37 -3.77 -0.02 0.42 16 30 C 0.06 0.65 5.36 -3.77 -0.02 0.63 16 31 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 33 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.19 2.29 6.86 -52.49 -0.36 1.93 16 35 H 0.20 2.43 8.06 -52.48 -0.42 2.01 16 36 H 0.06 0.74 8.06 -51.93 -0.42 0.32 16 37 H 0.10 1.03 7.85 -51.92 -0.41 0.62 16 38 H 0.09 0.55 8.07 -51.92 -0.42 0.13 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.55 8.03 -51.93 -0.42 0.13 16 41 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 42 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 43 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.20 0.74 8.06 -52.49 -0.42 0.31 16 45 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.74 6.14 -51.93 -0.32 0.42 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.10 0.99 5.09 -51.92 -0.26 0.72 16 LS Contribution 396.35 15.07 5.97 5.97 Total: -1.00 -33.57 396.35 -12.07 -45.64 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.38 Total: -0.17 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -5.41 Total: 3.92 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -1.30 Total: -70.50 kcal Atomic # 8 Polarization: -1.58 SS G_CDS: 0.06 Total: -1.52 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.57 -12.07 -45.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520117.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.252 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds